Wall clock time and date at job start Tue Mar 31 2020 21:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35062 * 125.56603 * 2 1 4 4 O 1.21304 * 127.28259 * 359.97438 * 3 2 1 5 5 C 1.49978 * 105.43284 * 179.97438 * 3 2 1 6 6 O 1.21302 * 127.28488 * 180.25851 * 5 3 2 7 7 N 1.35064 * 105.43192 * 359.97438 * 5 3 2 8 8 C 1.46500 * 125.56514 * 180.02562 * 7 5 3 9 9 C 1.50694 * 109.47155 * 89.97549 * 8 7 5 10 10 O 1.21286 * 120.00259 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00062 * 179.97438 * 9 8 7 12 12 C 1.46498 * 120.00146 * 179.97438 * 11 9 8 13 13 C 1.53001 * 110.64165 * 300.70226 * 12 11 9 14 14 C 1.55157 * 110.72431 * 177.55761 * 12 11 9 15 15 C 1.55396 * 101.36593 * 277.04802 * 14 12 11 16 16 N 1.47427 * 104.87090 * 323.01114 * 15 14 12 17 17 C 1.36933 * 125.64794 * 204.09754 * 16 15 14 18 18 H 1.07995 * 120.00197 * 180.02562 * 17 16 15 19 19 C 1.38811 * 120.00254 * 0.04511 * 17 16 15 20 20 N 1.31631 * 119.99818 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00389 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47271 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47341 * 119.99902 * 21 19 17 24 24 H 1.48502 * 109.47176 * 239.99623 * 21 19 17 25 25 C 1.47025 * 108.70506 * 24.13466 * 16 15 14 26 26 C 1.34271 * 108.86391 * 0.02562 * 7 5 3 27 27 O 1.21483 * 124.29710 * 180.02562 * 26 7 5 28 28 H 1.08998 * 109.46703 * 270.02501 * 1 2 3 29 29 H 1.08991 * 109.47190 * 30.02342 * 1 2 3 30 30 H 1.09004 * 109.46605 * 150.02959 * 1 2 3 31 31 H 1.09003 * 109.46880 * 209.97472 * 8 7 5 32 32 H 1.08997 * 109.47492 * 329.97233 * 8 7 5 33 33 H 0.96997 * 120.00364 * 359.97438 * 11 9 8 34 34 H 1.09002 * 109.47276 * 59.29974 * 13 12 11 35 35 H 1.09004 * 109.46955 * 179.29620 * 13 12 11 36 36 H 1.08990 * 109.47247 * 299.29529 * 13 12 11 37 37 H 1.08998 * 111.00111 * 35.21273 * 14 12 11 38 38 H 1.08992 * 111.00596 * 159.06487 * 14 12 11 39 39 H 1.08997 * 110.33836 * 204.16828 * 15 14 12 40 40 H 1.08994 * 110.35384 * 81.86421 * 15 14 12 41 41 H 0.96995 * 119.99812 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.88274 * 239.51972 * 25 16 15 43 43 H 1.09003 * 109.88001 * 118.35236 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2506 1.0987 0.0000 4 8 1.8929 2.2578 -0.0004 5 6 3.6587 0.5824 0.0006 6 8 4.6808 1.2356 0.0052 7 7 3.5480 -0.7637 0.0015 8 6 4.6659 -1.7106 0.0030 9 6 5.0486 -2.0337 1.4242 10 8 4.4472 -1.5230 2.3453 11 7 6.0593 -2.8903 1.6717 12 6 6.4318 -3.2041 3.0534 13 6 6.8394 -1.9346 3.8037 14 6 7.5740 -4.2536 3.0893 15 6 6.7774 -5.5787 2.9327 16 7 5.5347 -5.3656 3.6967 17 6 4.7515 -6.3502 4.2373 18 1 3.8559 -6.0899 4.7818 19 6 5.1088 -7.6830 4.0858 20 7 6.2003 -8.0003 3.4220 21 14 4.0408 -9.0261 4.8237 22 1 2.8791 -8.4112 5.5146 23 1 3.5560 -9.9225 3.7437 24 1 4.8380 -9.8125 5.7991 25 6 5.2751 -3.9210 3.7814 26 6 2.2461 -1.0922 0.0009 27 8 1.8279 -2.2328 0.0019 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8903 -0.5134 31 1 4.3680 -2.6250 -0.5100 32 1 5.5185 -1.2669 -0.5110 33 1 6.5401 -3.2991 0.9351 34 1 6.0082 -1.2294 3.8032 35 1 7.1003 -2.1878 4.8313 36 1 7.7001 -1.4821 3.3114 37 1 8.2642 -4.1084 2.2583 38 1 8.1013 -4.2247 4.0427 39 1 7.3419 -6.4118 3.3513 40 1 6.5503 -5.7626 1.8826 41 1 6.4498 -8.9316 3.3158 42 1 5.2451 -3.6103 4.8258 43 1 4.3284 -3.6853 3.2951 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569647695.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:53 Heat of formation + Delta-G solvation = -72.409578 kcal Electronic energy + Delta-G solvation = -30380.236015 eV Core-core repulsion = 26042.071882 eV Total energy + Delta-G solvation = -4338.164133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.56753 -41.38284 -40.51058 -40.07432 -38.90228 -37.72771 -36.41217 -35.74738 -33.79654 -32.15030 -31.00374 -30.29552 -28.00425 -27.55360 -26.84487 -25.42897 -23.58262 -23.13877 -22.31778 -21.87304 -20.55139 -19.38634 -19.14345 -18.84679 -18.35492 -17.95445 -17.79417 -17.24056 -16.82416 -16.56063 -16.51411 -16.26162 -15.94957 -15.81941 -15.58691 -15.08002 -14.67849 -14.40641 -14.22448 -14.05838 -14.01154 -13.78774 -13.58659 -13.37983 -13.31187 -13.08292 -12.82829 -12.78570 -12.34063 -12.09251 -12.07194 -11.98226 -11.88446 -11.69075 -11.50279 -11.42542 -11.17871 -10.75719 -10.60227 -10.09369 -8.88559 -7.79448 -5.22537 -0.95736 0.50570 0.82681 1.28826 1.32724 1.45206 1.45351 1.49863 1.55980 2.15172 2.47832 2.62853 3.29782 3.41407 3.49100 3.69648 3.70921 3.95037 3.99282 4.03460 4.11919 4.16512 4.19313 4.40824 4.58704 4.62420 4.67869 4.74348 4.78910 4.84897 4.90365 5.00711 5.09726 5.30607 5.32404 5.42681 5.43164 5.59870 5.66652 5.81333 5.91784 6.28753 6.31866 6.52339 7.10964 7.17784 7.77074 8.39817 9.21747 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015359 B = 0.003221 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.617268 B = 8691.198343 C = 9880.386108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.567 5.567 3 C 0.523 3.477 4 O -0.428 6.428 5 C 0.519 3.481 6 O -0.426 6.426 7 N -0.556 5.556 8 C 0.103 3.897 9 C 0.494 3.506 10 O -0.569 6.569 11 N -0.693 5.693 12 C 0.171 3.829 13 C -0.140 4.140 14 C -0.126 4.126 15 C 0.154 3.846 16 N -0.623 5.623 17 C -0.242 4.242 18 H 0.066 0.934 19 C -0.058 4.058 20 N -0.941 5.941 21 Si 0.975 3.025 22 H -0.275 1.275 23 H -0.289 1.289 24 H -0.286 1.286 25 C 0.138 3.862 26 C 0.716 3.284 27 O -0.504 6.504 28 H 0.087 0.913 29 H 0.116 0.884 30 H 0.106 0.894 31 H 0.154 0.846 32 H 0.173 0.827 33 H 0.417 0.583 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.107 0.893 38 H 0.081 0.919 39 H 0.075 0.925 40 H -0.001 1.001 41 H 0.249 0.751 42 H 0.017 0.983 43 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.908 16.683 -12.203 20.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.315 5.315 3 C 0.303 3.697 4 O -0.294 6.294 5 C 0.300 3.700 6 O -0.291 6.291 7 N -0.304 5.304 8 C -0.020 4.020 9 C 0.279 3.721 10 O -0.448 6.448 11 N -0.346 5.346 12 C 0.084 3.916 13 C -0.199 4.199 14 C -0.164 4.164 15 C 0.029 3.971 16 N -0.349 5.349 17 C -0.371 4.371 18 H 0.084 0.916 19 C -0.251 4.251 20 N -0.591 5.591 21 Si 0.804 3.196 22 H -0.200 1.200 23 H -0.216 1.216 24 H -0.213 1.213 25 C 0.012 3.988 26 C 0.419 3.581 27 O -0.374 6.374 28 H 0.105 0.895 29 H 0.134 0.866 30 H 0.125 0.875 31 H 0.172 0.828 32 H 0.190 0.810 33 H 0.255 0.745 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.126 0.874 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.017 0.983 41 H 0.059 0.941 42 H 0.035 0.965 43 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -3.247 17.190 -11.527 20.950 hybrid contribution -0.610 -1.318 0.384 1.502 sum -3.857 15.872 -11.144 19.773 Atomic orbital electron populations 1.22339 0.71012 1.06885 1.05583 1.46615 1.11120 1.05990 1.67796 1.20613 0.87427 0.85448 0.76181 1.90843 1.79593 1.17140 1.41853 1.20887 0.90992 0.82295 0.75805 1.90837 1.34093 1.62880 1.41277 1.46146 1.07738 1.08471 1.68032 1.21893 0.89737 0.95818 0.94569 1.21220 0.79804 0.78911 0.92139 1.90697 1.53413 1.53535 1.47168 1.45748 1.34939 1.45260 1.08649 1.21159 0.94086 0.94846 0.81507 1.21951 1.01873 0.95923 1.00107 1.23289 0.95862 0.93597 1.03688 1.21867 0.86380 0.95846 0.92957 1.44778 1.26690 1.00433 1.63044 1.19364 1.03712 0.86719 1.27335 0.91565 1.25498 0.99517 0.98717 1.01357 1.70007 1.25863 1.16451 1.46769 0.85058 0.77967 0.79084 0.77498 1.20019 1.21593 1.21309 1.21650 0.96215 0.84312 0.96639 1.15927 0.80977 0.84988 0.76208 1.91073 1.76322 1.19432 1.50561 0.89451 0.86594 0.87498 0.82831 0.80999 0.74518 0.92625 0.91569 0.90102 0.87444 0.90058 0.90728 0.98343 0.94133 0.96530 0.97600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 10.89 127.77 1.39 2.27 16 2 N -0.57 -10.34 3.06 -797.78 -2.44 -12.78 16 3 C 0.52 10.69 8.31 87.39 0.73 11.42 16 4 O -0.43 -10.08 17.88 -3.10 -0.06 -10.14 16 5 C 0.52 11.36 8.31 87.39 0.73 12.09 16 6 O -0.43 -10.79 17.89 -3.10 -0.06 -10.84 16 7 N -0.56 -11.73 2.15 -778.34 -1.67 -13.40 16 8 C 0.10 1.82 6.34 85.63 0.54 2.36 16 9 C 0.49 13.56 7.11 87.65 0.62 14.18 16 10 O -0.57 -20.47 13.38 -3.05 -0.04 -20.51 16 11 N -0.69 -18.28 5.15 -417.55 -2.15 -20.43 16 12 C 0.17 5.58 0.80 4.80 0.00 5.59 16 13 C -0.14 -4.02 8.41 71.98 0.61 -3.42 16 14 C -0.13 -4.06 6.11 32.16 0.20 -3.86 16 15 C 0.15 7.07 5.88 87.03 0.51 7.58 16 16 N -0.62 -32.47 3.40 -691.00 -2.35 -34.81 16 17 C -0.24 -14.02 10.27 84.03 0.86 -13.15 16 18 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 19 C -0.06 -3.29 5.49 84.86 0.47 -2.82 16 20 N -0.94 -54.61 10.09 21.65 0.22 -54.39 16 21 Si 0.98 46.13 29.55 68.60 2.03 48.16 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 24 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 25 C 0.14 6.18 6.16 86.73 0.53 6.71 16 26 C 0.72 16.32 8.32 179.37 1.49 17.81 16 27 O -0.50 -14.49 17.27 -3.66 -0.06 -14.55 16 28 H 0.09 0.89 8.14 -2.39 -0.02 0.88 16 29 H 0.12 0.79 8.10 -2.39 -0.02 0.77 16 30 H 0.11 1.01 7.98 -2.39 -0.02 0.99 16 31 H 0.15 2.19 7.98 -2.39 -0.02 2.17 16 32 H 0.17 1.61 8.10 -2.39 -0.02 1.60 16 33 H 0.42 8.12 8.48 -92.71 -0.79 7.34 16 34 H 0.05 1.81 6.21 -2.39 -0.01 1.80 16 35 H 0.07 1.87 8.12 -2.38 -0.02 1.85 16 36 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.11 2.59 8.06 -2.39 -0.02 2.57 16 38 H 0.08 2.61 8.05 -2.39 -0.02 2.59 16 39 H 0.07 3.96 5.87 -2.39 -0.01 3.94 16 40 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 41 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 42 H 0.02 0.78 7.80 -2.39 -0.02 0.76 16 43 H 0.01 0.30 6.68 -2.39 -0.02 0.28 16 Total: -1.00 -80.43 365.51 2.39 -78.04 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 0.28 Total: 8.91 kcal Atomic # 6 Polarization: 48.07 SS G_CDS: 8.68 Total: 56.75 kcal Atomic # 7 Polarization: -127.42 SS G_CDS: -8.39 Total: -135.81 kcal Atomic # 8 Polarization: -55.83 SS G_CDS: -0.21 Total: -56.05 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -80.43 2.39 -78.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569647695.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.627 kcal (2) G-P(sol) polarization free energy of solvation -80.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds