Wall clock time and date at job start Tue Mar 31 2020 21:38:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46509 * 1
3 3 C 1.35065 * 125.56329 * 2 1
4 4 O 1.21297 * 127.28445 * 0.05899 * 3 2 1
5 5 C 1.49980 * 105.42987 * 179.83371 * 3 2 1
6 6 O 1.21296 * 127.28840 * 180.24540 * 5 3 2
7 7 N 1.35070 * 105.43124 * 0.33162 * 5 3 2
8 8 C 1.46494 * 125.56836 * 179.97438 * 7 5 3
9 9 C 1.50705 * 109.47124 * 269.69597 * 8 7 5
10 10 O 1.21277 * 120.00033 * 359.97438 * 9 8 7
11 11 N 1.34773 * 119.99863 * 180.02562 * 9 8 7
12 12 C 1.46500 * 119.99841 * 179.97438 * 11 9 8
13 13 C 1.53001 * 110.91697 * 56.09677 * 12 11 9
14 14 C 1.55157 * 111.00466 * 179.97438 * 12 11 9
15 15 C 1.54325 * 102.94184 * 82.57497 * 14 12 11
16 16 N 1.47022 * 107.26948 * 22.19107 * 15 14 12
17 17 C 1.36945 * 125.64832 * 181.02381 * 16 15 14
18 18 H 1.07997 * 119.99756 * 180.02562 * 17 16 15
19 19 C 1.38805 * 119.99878 * 0.02562 * 17 16 15
20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16
21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16
22 22 H 1.48496 * 109.47187 * 179.97438 * 21 19 17
23 23 H 1.48494 * 109.47141 * 300.00154 * 21 19 17
24 24 H 1.48498 * 109.47018 * 60.00200 * 21 19 17
25 25 C 1.47423 * 108.70390 * 1.29074 * 16 15 14
26 26 C 1.34266 * 125.56786 * 180.02562 * 2 1 3
27 27 O 1.21488 * 124.30041 * 359.97438 * 26 2 1
28 28 H 1.09000 * 109.47044 * 269.95760 * 1 2 3
29 29 H 1.08997 * 109.46927 * 29.95479 * 1 2 3
30 30 H 1.08998 * 109.47157 * 149.96038 * 1 2 3
31 31 H 1.08994 * 109.47420 * 149.69323 * 8 7 5
32 32 H 1.09002 * 109.46828 * 29.69181 * 8 7 5
33 33 H 0.97003 * 120.00176 * 359.97438 * 11 9 8
34 34 H 1.08996 * 109.47690 * 183.89832 * 13 12 11
35 35 H 1.08999 * 109.46882 * 303.90238 * 13 12 11
36 36 H 1.09005 * 109.47260 * 63.90076 * 13 12 11
37 37 H 1.09000 * 110.72140 * 324.21327 * 14 12 11
38 38 H 1.08998 * 110.72520 * 200.93646 * 14 12 11
39 39 H 1.09002 * 109.88274 * 262.77538 * 15 14 12
40 40 H 1.09000 * 110.01178 * 141.68100 * 15 14 12
41 41 H 0.97001 * 119.99885 * 179.97438 * 20 19 17
42 42 H 1.09000 * 110.37068 * 94.48354 * 25 16 15
43 43 H 1.09005 * 110.36651 * 216.80519 * 25 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.2506 1.0987 0.0000
4 8 1.8929 2.2577 0.0010
5 6 3.6588 0.5825 0.0042
6 8 4.6809 1.2356 0.0096
7 7 3.5481 -0.7637 -0.0013
8 6 4.6658 -1.7106 -0.0005
9 6 5.0498 -2.0357 -1.4211
10 8 4.4486 -1.5269 -2.3434
11 7 6.0606 -2.8926 -1.6667
12 6 6.4335 -3.2091 -3.0476
13 6 6.7663 -1.9364 -3.8289
14 6 7.6170 -4.2116 -3.0883
15 6 6.9206 -5.5762 -2.9026
16 7 5.5165 -5.4080 -3.3047
17 6 4.5541 -6.3816 -3.2695
18 1 3.5469 -6.1570 -3.5881
19 6 4.8731 -7.6570 -2.8244
20 7 6.1005 -7.9306 -2.4357
21 14 3.5602 -8.9849 -2.7757
22 1 4.1521 -10.2479 -2.2660
23 1 2.4568 -8.5574 -1.8786
24 1 3.0281 -9.2053 -4.1445
25 6 5.3177 -4.0194 -3.7582
26 6 2.2461 -1.0922 -0.0005
27 8 1.8279 -2.2328 -0.0005
28 1 -0.3633 -0.0008 1.0277
29 1 -0.3633 0.8904 -0.5131
30 1 -0.3633 -0.8896 -0.5144
31 1 4.3676 -2.6243 0.5134
32 1 5.5181 -1.2662 0.5135
33 1 6.5412 -3.2999 -0.9290
34 1 6.9726 -2.1915 -4.8683
35 1 5.9201 -1.2508 -3.7840
36 1 7.6435 -1.4600 -3.3908
37 1 8.3132 -4.0197 -2.2719
38 1 8.1274 -4.1670 -4.0504
39 1 6.9729 -5.8798 -1.8570
40 1 7.3988 -6.3276 -3.5310
41 1 6.3233 -8.8219 -2.1242
42 1 5.4289 -3.9541 -4.8406
43 1 4.3352 -3.6581 -3.4545
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001569647696.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:38:59
Heat of formation + Delta-G solvation = -46.763718 kcal
Electronic energy + Delta-G solvation = -30552.667960 eV
Core-core repulsion = 26215.615915 eV
Total energy + Delta-G solvation = -4337.052045 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 338.147 amu
Computer time = 1.43 seconds
Orbital eigenvalues (eV)
-43.62142 -40.09080 -39.49359 -39.04009 -37.43286 -36.69001 -35.45637 -34.01966
-32.19909 -30.75277 -29.79661 -28.71547 -27.16102 -25.90074 -25.68323 -23.74321
-22.55618 -22.19807 -20.95213 -20.18214 -19.22030 -18.30137 -18.17354 -17.40163
-17.17012 -16.80654 -16.60630 -16.07678 -15.58639 -15.31789 -15.09448 -14.99375
-14.77870 -14.62691 -13.85143 -13.79056 -13.52352 -13.35312 -13.08489 -13.00693
-12.90230 -12.66594 -12.01445 -11.98023 -11.80143 -11.69576 -11.29005 -10.91692
-10.87583 -10.83987 -10.49714 -10.42119 -10.39526 -10.33686 -10.11596 -10.03520
-9.67469 -9.33736 -8.76735 -8.57291 -6.82238 -5.71810 -3.04022 0.00643
1.40941 1.71201 2.22442 2.28478 2.66495 3.29946 3.41740 3.45628
3.47204 3.57599 4.23937 4.50506 4.60564 4.68265 4.84842 4.88335
4.91146 4.95359 5.09999 5.20228 5.33025 5.35847 5.44774 5.58541
5.69235 5.96482 6.07726 6.12325 6.25386 6.30779 6.35367 6.36242
6.47559 6.63002 6.74498 6.84541 7.01734 7.25025 7.52156 7.53072
7.69803 7.79641 8.24731 8.32583 9.22605 9.82360 10.47698 11.40078
Molecular weight = 338.15amu
Principal moments of inertia in cm(-1)
A = 0.013561 B = 0.003612 C = 0.003041
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2064.219200 B = 7749.396316 C = 9204.485534
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.089 3.911
2 N -0.574 5.574
3 C 0.514 3.486
4 O -0.416 6.416
5 C 0.514 3.486
6 O -0.410 6.410
7 N -0.556 5.556
8 C 0.100 3.900
9 C 0.503 3.497
10 O -0.532 6.532
11 N -0.691 5.691
12 C 0.157 3.843
13 C -0.153 4.153
14 C -0.146 4.146
15 C 0.177 3.823
16 N -0.603 5.603
17 C -0.223 4.223
18 H 0.075 0.925
19 C -0.008 4.008
20 N -0.925 5.925
21 Si 0.910 3.090
22 H -0.290 1.290
23 H -0.285 1.285
24 H -0.286 1.286
25 C 0.134 3.866
26 C 0.712 3.288
27 O -0.473 6.473
28 H 0.080 0.920
29 H 0.094 0.906
30 H 0.098 0.902
31 H 0.135 0.865
32 H 0.130 0.870
33 H 0.402 0.598
34 H 0.063 0.937
35 H 0.076 0.924
36 H 0.050 0.950
37 H 0.065 0.935
38 H 0.074 0.926
39 H 0.046 0.954
40 H 0.044 0.956
41 H 0.252 0.748
42 H 0.026 0.974
43 H 0.049 0.951
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.200 16.014 7.807 18.100
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.051 4.051
2 N -0.324 5.324
3 C 0.294 3.706
4 O -0.280 6.280
5 C 0.295 3.705
6 O -0.274 6.274
7 N -0.304 5.304
8 C -0.024 4.024
9 C 0.287 3.713
10 O -0.409 6.409
11 N -0.342 5.342
12 C 0.070 3.930
13 C -0.211 4.211
14 C -0.185 4.185
15 C 0.052 3.948
16 N -0.329 5.329
17 C -0.351 4.351
18 H 0.093 0.907
19 C -0.204 4.204
20 N -0.573 5.573
21 Si 0.741 3.259
22 H -0.216 1.216
23 H -0.212 1.212
24 H -0.212 1.212
25 C 0.007 3.993
26 C 0.415 3.585
27 O -0.339 6.339
28 H 0.099 0.901
29 H 0.113 0.887
30 H 0.116 0.884
31 H 0.153 0.847
32 H 0.148 0.852
33 H 0.236 0.764
34 H 0.082 0.918
35 H 0.095 0.905
36 H 0.069 0.931
37 H 0.084 0.916
38 H 0.092 0.908
39 H 0.064 0.936
40 H 0.062 0.938
41 H 0.062 0.938
42 H 0.044 0.956
43 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges -3.527 16.477 7.200 18.324
hybrid contribution -0.422 -1.183 0.333 1.299
sum -3.949 15.294 7.533 17.500
Atomic orbital electron populations
1.21998 0.73121 1.05631 1.04312 1.46539 1.10006 1.07073 1.68766
1.20813 0.87656 0.85575 0.76535 1.90838 1.79467 1.16641 1.41104
1.20815 0.90886 0.82333 0.76500 1.90842 1.33414 1.62575 1.40573
1.46094 1.07568 1.08336 1.68405 1.21658 0.88582 0.94673 0.97498
1.20402 0.80551 0.79802 0.90568 1.90675 1.52358 1.52614 1.45254
1.45671 1.34440 1.44902 1.09173 1.21574 0.96650 0.94090 0.80674
1.22032 1.01966 0.97495 0.99604 1.23233 0.96073 0.97520 1.01630
1.21170 0.83724 0.90089 0.99838 1.44443 1.06793 1.05733 1.75964
1.19009 0.90152 0.89057 1.36906 0.90678 1.24745 0.96721 0.97375
1.01512 1.69933 1.17137 1.20422 1.49808 0.86216 0.80690 0.81210
0.77793 1.21624 1.21174 1.21226 1.21898 0.96376 0.85550 0.95459
1.15819 0.80700 0.85039 0.76948 1.91101 1.75785 1.18190 1.48861
0.90119 0.88743 0.88364 0.84678 0.85187 0.76373 0.91807 0.90506
0.93103 0.91616 0.90778 0.93565 0.93777 0.93810 0.95631 0.93299
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 23.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.58 10.89 59.85 0.65 1.23 16
2 N -0.57 -5.77 3.06 -128.65 -0.39 -6.17 16
3 C 0.51 5.70 8.31 -11.20 -0.09 5.61 16
4 O -0.42 -5.23 17.88 5.54 0.10 -5.13 16
5 C 0.51 6.15 8.31 -11.20 -0.09 6.06 16
6 O -0.41 -5.62 17.88 5.54 0.10 -5.52 16
7 N -0.56 -6.55 2.15 -122.51 -0.26 -6.82 16
8 C 0.10 1.07 6.34 -5.19 -0.03 1.04 16
9 C 0.50 7.50 7.28 -10.98 -0.08 7.42 16
10 O -0.53 -9.67 13.27 5.56 0.07 -9.60 16
11 N -0.69 -10.20 5.19 -45.52 -0.24 -10.44 16
12 C 0.16 2.64 0.82 -129.55 -0.11 2.53 16
13 C -0.15 -2.28 8.59 37.16 0.32 -1.97 16
14 C -0.15 -2.46 5.97 -24.90 -0.15 -2.60 16
15 C 0.18 4.01 5.37 -3.06 -0.02 4.00 16
16 N -0.60 -15.09 3.39 -169.93 -0.58 -15.67 16
17 C -0.22 -6.23 10.28 -15.06 -0.15 -6.38 16
18 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16
19 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16
20 N -0.92 -26.46 10.31 55.49 0.57 -25.89 16
21 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16
22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16
23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
25 C 0.13 2.87 6.18 -2.41 -0.01 2.86 16
26 C 0.71 8.82 8.32 -87.82 -0.73 8.08 16
27 O -0.47 -7.23 17.27 5.38 0.09 -7.13 16
28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16
29 H 0.09 0.50 8.10 -51.93 -0.42 0.07 16
30 H 0.10 0.64 7.98 -51.93 -0.41 0.23 16
31 H 0.14 1.29 7.98 -51.93 -0.41 0.88 16
32 H 0.13 0.95 8.09 -51.93 -0.42 0.53 16
33 H 0.40 4.97 8.51 -40.82 -0.35 4.62 16
34 H 0.06 0.91 8.07 -51.93 -0.42 0.49 16
35 H 0.08 1.28 5.92 -51.93 -0.31 0.97 16
36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
37 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16
38 H 0.07 1.18 8.04 -51.93 -0.42 0.76 16
39 H 0.05 1.14 7.38 -51.93 -0.38 0.75 16
40 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16
41 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16
42 H 0.03 0.56 7.99 -51.93 -0.41 0.14 16
43 H 0.05 1.14 6.89 -51.93 -0.36 0.78 16
LS Contribution 366.36 15.07 5.52 5.52
Total: -1.00 -35.57 366.36 -6.15 -41.72
By element:
Atomic # 1 Polarization: 5.91 SS G_CDS: -5.52 Total: 0.39 kcal
Atomic # 6 Polarization: 28.17 SS G_CDS: -0.60 Total: 27.57 kcal
Atomic # 7 Polarization: -64.08 SS G_CDS: -0.90 Total: -64.98 kcal
Atomic # 8 Polarization: -27.75 SS G_CDS: 0.36 Total: -27.38 kcal
Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal
Total LS contribution 5.52 Total: 5.52 kcal
Total: -35.57 -6.15 -41.72 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001569647696.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.043 kcal
(2) G-P(sol) polarization free energy of solvation -35.572 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.615 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.148 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.721 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.764 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.43 seconds