Wall clock time and date at job start Tue Mar 31 2020 21:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.35065 * 125.56329 * 2 1 4 4 O 1.21297 * 127.28445 * 0.05899 * 3 2 1 5 5 C 1.49980 * 105.42987 * 179.83371 * 3 2 1 6 6 O 1.21296 * 127.28840 * 180.24540 * 5 3 2 7 7 N 1.35070 * 105.43124 * 0.33162 * 5 3 2 8 8 C 1.46494 * 125.56836 * 179.97438 * 7 5 3 9 9 C 1.50705 * 109.47124 * 269.69597 * 8 7 5 10 10 O 1.21277 * 120.00033 * 359.97438 * 9 8 7 11 11 N 1.34773 * 119.99863 * 180.02562 * 9 8 7 12 12 C 1.46500 * 119.99841 * 179.97438 * 11 9 8 13 13 C 1.53001 * 110.91697 * 56.09677 * 12 11 9 14 14 C 1.55157 * 111.00466 * 179.97438 * 12 11 9 15 15 C 1.54325 * 102.94184 * 82.57497 * 14 12 11 16 16 N 1.47022 * 107.26948 * 22.19107 * 15 14 12 17 17 C 1.36945 * 125.64832 * 181.02381 * 16 15 14 18 18 H 1.07997 * 119.99756 * 180.02562 * 17 16 15 19 19 C 1.38805 * 119.99878 * 0.02562 * 17 16 15 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47187 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 300.00154 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00200 * 21 19 17 25 25 C 1.47423 * 108.70390 * 1.29074 * 16 15 14 26 26 C 1.34266 * 125.56786 * 180.02562 * 2 1 3 27 27 O 1.21488 * 124.30041 * 359.97438 * 26 2 1 28 28 H 1.09000 * 109.47044 * 269.95760 * 1 2 3 29 29 H 1.08997 * 109.46927 * 29.95479 * 1 2 3 30 30 H 1.08998 * 109.47157 * 149.96038 * 1 2 3 31 31 H 1.08994 * 109.47420 * 149.69323 * 8 7 5 32 32 H 1.09002 * 109.46828 * 29.69181 * 8 7 5 33 33 H 0.97003 * 120.00176 * 359.97438 * 11 9 8 34 34 H 1.08996 * 109.47690 * 183.89832 * 13 12 11 35 35 H 1.08999 * 109.46882 * 303.90238 * 13 12 11 36 36 H 1.09005 * 109.47260 * 63.90076 * 13 12 11 37 37 H 1.09000 * 110.72140 * 324.21327 * 14 12 11 38 38 H 1.08998 * 110.72520 * 200.93646 * 14 12 11 39 39 H 1.09002 * 109.88274 * 262.77538 * 15 14 12 40 40 H 1.09000 * 110.01178 * 141.68100 * 15 14 12 41 41 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 42 42 H 1.09000 * 110.37068 * 94.48354 * 25 16 15 43 43 H 1.09005 * 110.36651 * 216.80519 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2506 1.0987 0.0000 4 8 1.8929 2.2577 0.0010 5 6 3.6588 0.5825 0.0042 6 8 4.6809 1.2356 0.0096 7 7 3.5481 -0.7637 -0.0013 8 6 4.6658 -1.7106 -0.0005 9 6 5.0498 -2.0357 -1.4211 10 8 4.4486 -1.5269 -2.3434 11 7 6.0606 -2.8926 -1.6667 12 6 6.4335 -3.2091 -3.0476 13 6 6.7663 -1.9364 -3.8289 14 6 7.6170 -4.2116 -3.0883 15 6 6.9206 -5.5762 -2.9026 16 7 5.5165 -5.4080 -3.3047 17 6 4.5541 -6.3816 -3.2695 18 1 3.5469 -6.1570 -3.5881 19 6 4.8731 -7.6570 -2.8244 20 7 6.1005 -7.9306 -2.4357 21 14 3.5602 -8.9849 -2.7757 22 1 4.1521 -10.2479 -2.2660 23 1 2.4568 -8.5574 -1.8786 24 1 3.0281 -9.2053 -4.1445 25 6 5.3177 -4.0194 -3.7582 26 6 2.2461 -1.0922 -0.0005 27 8 1.8279 -2.2328 -0.0005 28 1 -0.3633 -0.0008 1.0277 29 1 -0.3633 0.8904 -0.5131 30 1 -0.3633 -0.8896 -0.5144 31 1 4.3676 -2.6243 0.5134 32 1 5.5181 -1.2662 0.5135 33 1 6.5412 -3.2999 -0.9290 34 1 6.9726 -2.1915 -4.8683 35 1 5.9201 -1.2508 -3.7840 36 1 7.6435 -1.4600 -3.3908 37 1 8.3132 -4.0197 -2.2719 38 1 8.1274 -4.1670 -4.0504 39 1 6.9729 -5.8798 -1.8570 40 1 7.3988 -6.3276 -3.5310 41 1 6.3233 -8.8219 -2.1242 42 1 5.4289 -3.9541 -4.8406 43 1 4.3352 -3.6581 -3.4545 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569647696.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:59 Heat of formation + Delta-G solvation = -46.763718 kcal Electronic energy + Delta-G solvation = -30552.667960 eV Core-core repulsion = 26215.615915 eV Total energy + Delta-G solvation = -4337.052045 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -43.62142 -40.09080 -39.49359 -39.04009 -37.43286 -36.69001 -35.45637 -34.01966 -32.19909 -30.75277 -29.79661 -28.71547 -27.16102 -25.90074 -25.68323 -23.74321 -22.55618 -22.19807 -20.95213 -20.18214 -19.22030 -18.30137 -18.17354 -17.40163 -17.17012 -16.80654 -16.60630 -16.07678 -15.58639 -15.31789 -15.09448 -14.99375 -14.77870 -14.62691 -13.85143 -13.79056 -13.52352 -13.35312 -13.08489 -13.00693 -12.90230 -12.66594 -12.01445 -11.98023 -11.80143 -11.69576 -11.29005 -10.91692 -10.87583 -10.83987 -10.49714 -10.42119 -10.39526 -10.33686 -10.11596 -10.03520 -9.67469 -9.33736 -8.76735 -8.57291 -6.82238 -5.71810 -3.04022 0.00643 1.40941 1.71201 2.22442 2.28478 2.66495 3.29946 3.41740 3.45628 3.47204 3.57599 4.23937 4.50506 4.60564 4.68265 4.84842 4.88335 4.91146 4.95359 5.09999 5.20228 5.33025 5.35847 5.44774 5.58541 5.69235 5.96482 6.07726 6.12325 6.25386 6.30779 6.35367 6.36242 6.47559 6.63002 6.74498 6.84541 7.01734 7.25025 7.52156 7.53072 7.69803 7.79641 8.24731 8.32583 9.22605 9.82360 10.47698 11.40078 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013561 B = 0.003612 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.219200 B = 7749.396316 C = 9204.485534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.574 5.574 3 C 0.514 3.486 4 O -0.416 6.416 5 C 0.514 3.486 6 O -0.410 6.410 7 N -0.556 5.556 8 C 0.100 3.900 9 C 0.503 3.497 10 O -0.532 6.532 11 N -0.691 5.691 12 C 0.157 3.843 13 C -0.153 4.153 14 C -0.146 4.146 15 C 0.177 3.823 16 N -0.603 5.603 17 C -0.223 4.223 18 H 0.075 0.925 19 C -0.008 4.008 20 N -0.925 5.925 21 Si 0.910 3.090 22 H -0.290 1.290 23 H -0.285 1.285 24 H -0.286 1.286 25 C 0.134 3.866 26 C 0.712 3.288 27 O -0.473 6.473 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.402 0.598 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.050 0.950 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.046 0.954 40 H 0.044 0.956 41 H 0.252 0.748 42 H 0.026 0.974 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.200 16.014 7.807 18.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.324 5.324 3 C 0.294 3.706 4 O -0.280 6.280 5 C 0.295 3.705 6 O -0.274 6.274 7 N -0.304 5.304 8 C -0.024 4.024 9 C 0.287 3.713 10 O -0.409 6.409 11 N -0.342 5.342 12 C 0.070 3.930 13 C -0.211 4.211 14 C -0.185 4.185 15 C 0.052 3.948 16 N -0.329 5.329 17 C -0.351 4.351 18 H 0.093 0.907 19 C -0.204 4.204 20 N -0.573 5.573 21 Si 0.741 3.259 22 H -0.216 1.216 23 H -0.212 1.212 24 H -0.212 1.212 25 C 0.007 3.993 26 C 0.415 3.585 27 O -0.339 6.339 28 H 0.099 0.901 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.153 0.847 32 H 0.148 0.852 33 H 0.236 0.764 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.044 0.956 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.527 16.477 7.200 18.324 hybrid contribution -0.422 -1.183 0.333 1.299 sum -3.949 15.294 7.533 17.500 Atomic orbital electron populations 1.21998 0.73121 1.05631 1.04312 1.46539 1.10006 1.07073 1.68766 1.20813 0.87656 0.85575 0.76535 1.90838 1.79467 1.16641 1.41104 1.20815 0.90886 0.82333 0.76500 1.90842 1.33414 1.62575 1.40573 1.46094 1.07568 1.08336 1.68405 1.21658 0.88582 0.94673 0.97498 1.20402 0.80551 0.79802 0.90568 1.90675 1.52358 1.52614 1.45254 1.45671 1.34440 1.44902 1.09173 1.21574 0.96650 0.94090 0.80674 1.22032 1.01966 0.97495 0.99604 1.23233 0.96073 0.97520 1.01630 1.21170 0.83724 0.90089 0.99838 1.44443 1.06793 1.05733 1.75964 1.19009 0.90152 0.89057 1.36906 0.90678 1.24745 0.96721 0.97375 1.01512 1.69933 1.17137 1.20422 1.49808 0.86216 0.80690 0.81210 0.77793 1.21624 1.21174 1.21226 1.21898 0.96376 0.85550 0.95459 1.15819 0.80700 0.85039 0.76948 1.91101 1.75785 1.18190 1.48861 0.90119 0.88743 0.88364 0.84678 0.85187 0.76373 0.91807 0.90506 0.93103 0.91616 0.90778 0.93565 0.93777 0.93810 0.95631 0.93299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 10.89 59.85 0.65 1.23 16 2 N -0.57 -5.77 3.06 -128.65 -0.39 -6.17 16 3 C 0.51 5.70 8.31 -11.20 -0.09 5.61 16 4 O -0.42 -5.23 17.88 5.54 0.10 -5.13 16 5 C 0.51 6.15 8.31 -11.20 -0.09 6.06 16 6 O -0.41 -5.62 17.88 5.54 0.10 -5.52 16 7 N -0.56 -6.55 2.15 -122.51 -0.26 -6.82 16 8 C 0.10 1.07 6.34 -5.19 -0.03 1.04 16 9 C 0.50 7.50 7.28 -10.98 -0.08 7.42 16 10 O -0.53 -9.67 13.27 5.56 0.07 -9.60 16 11 N -0.69 -10.20 5.19 -45.52 -0.24 -10.44 16 12 C 0.16 2.64 0.82 -129.55 -0.11 2.53 16 13 C -0.15 -2.28 8.59 37.16 0.32 -1.97 16 14 C -0.15 -2.46 5.97 -24.90 -0.15 -2.60 16 15 C 0.18 4.01 5.37 -3.06 -0.02 4.00 16 16 N -0.60 -15.09 3.39 -169.93 -0.58 -15.67 16 17 C -0.22 -6.23 10.28 -15.06 -0.15 -6.38 16 18 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 19 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 20 N -0.92 -26.46 10.31 55.49 0.57 -25.89 16 21 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 C 0.13 2.87 6.18 -2.41 -0.01 2.86 16 26 C 0.71 8.82 8.32 -87.82 -0.73 8.08 16 27 O -0.47 -7.23 17.27 5.38 0.09 -7.13 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 0.50 8.10 -51.93 -0.42 0.07 16 30 H 0.10 0.64 7.98 -51.93 -0.41 0.23 16 31 H 0.14 1.29 7.98 -51.93 -0.41 0.88 16 32 H 0.13 0.95 8.09 -51.93 -0.42 0.53 16 33 H 0.40 4.97 8.51 -40.82 -0.35 4.62 16 34 H 0.06 0.91 8.07 -51.93 -0.42 0.49 16 35 H 0.08 1.28 5.92 -51.93 -0.31 0.97 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 38 H 0.07 1.18 8.04 -51.93 -0.42 0.76 16 39 H 0.05 1.14 7.38 -51.93 -0.38 0.75 16 40 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 41 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.03 0.56 7.99 -51.93 -0.41 0.14 16 43 H 0.05 1.14 6.89 -51.93 -0.36 0.78 16 LS Contribution 366.36 15.07 5.52 5.52 Total: -1.00 -35.57 366.36 -6.15 -41.72 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.52 Total: 0.39 kcal Atomic # 6 Polarization: 28.17 SS G_CDS: -0.60 Total: 27.57 kcal Atomic # 7 Polarization: -64.08 SS G_CDS: -0.90 Total: -64.98 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: 0.36 Total: -27.38 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.57 -6.15 -41.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569647696.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.043 kcal (2) G-P(sol) polarization free energy of solvation -35.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds