Wall clock time and date at job start Tue Mar 31 2020 21:38:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46509 * 1
3 3 C 1.35065 * 125.56329 * 2 1
4 4 O 1.21297 * 127.28445 * 0.05899 * 3 2 1
5 5 C 1.49980 * 105.42987 * 179.83371 * 3 2 1
6 6 O 1.21296 * 127.28840 * 180.24540 * 5 3 2
7 7 N 1.35070 * 105.43124 * 0.33162 * 5 3 2
8 8 C 1.46494 * 125.56836 * 179.97438 * 7 5 3
9 9 C 1.50705 * 109.47124 * 269.69597 * 8 7 5
10 10 O 1.21277 * 120.00033 * 359.97438 * 9 8 7
11 11 N 1.34773 * 119.99863 * 180.02562 * 9 8 7
12 12 C 1.46500 * 119.99841 * 179.97438 * 11 9 8
13 13 C 1.53001 * 110.91697 * 56.09677 * 12 11 9
14 14 C 1.55157 * 111.00466 * 179.97438 * 12 11 9
15 15 C 1.54325 * 102.94184 * 82.57497 * 14 12 11
16 16 N 1.47022 * 107.26948 * 22.19107 * 15 14 12
17 17 C 1.36945 * 125.64832 * 181.02381 * 16 15 14
18 18 H 1.07997 * 119.99756 * 180.02562 * 17 16 15
19 19 C 1.38805 * 119.99878 * 0.02562 * 17 16 15
20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16
21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16
22 22 H 1.48496 * 109.47187 * 179.97438 * 21 19 17
23 23 H 1.48494 * 109.47141 * 300.00154 * 21 19 17
24 24 H 1.48498 * 109.47018 * 60.00200 * 21 19 17
25 25 C 1.47423 * 108.70390 * 1.29074 * 16 15 14
26 26 C 1.34266 * 125.56786 * 180.02562 * 2 1 3
27 27 O 1.21488 * 124.30041 * 359.97438 * 26 2 1
28 28 H 1.09000 * 109.47044 * 269.95760 * 1 2 3
29 29 H 1.08997 * 109.46927 * 29.95479 * 1 2 3
30 30 H 1.08998 * 109.47157 * 149.96038 * 1 2 3
31 31 H 1.08994 * 109.47420 * 149.69323 * 8 7 5
32 32 H 1.09002 * 109.46828 * 29.69181 * 8 7 5
33 33 H 0.97003 * 120.00176 * 359.97438 * 11 9 8
34 34 H 1.08996 * 109.47690 * 183.89832 * 13 12 11
35 35 H 1.08999 * 109.46882 * 303.90238 * 13 12 11
36 36 H 1.09005 * 109.47260 * 63.90076 * 13 12 11
37 37 H 1.09000 * 110.72140 * 324.21327 * 14 12 11
38 38 H 1.08998 * 110.72520 * 200.93646 * 14 12 11
39 39 H 1.09002 * 109.88274 * 262.77538 * 15 14 12
40 40 H 1.09000 * 110.01178 * 141.68100 * 15 14 12
41 41 H 0.97001 * 119.99885 * 179.97438 * 20 19 17
42 42 H 1.09000 * 110.37068 * 94.48354 * 25 16 15
43 43 H 1.09005 * 110.36651 * 216.80519 * 25 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.2506 1.0987 0.0000
4 8 1.8929 2.2577 0.0010
5 6 3.6588 0.5825 0.0042
6 8 4.6809 1.2356 0.0096
7 7 3.5481 -0.7637 -0.0013
8 6 4.6658 -1.7106 -0.0005
9 6 5.0498 -2.0357 -1.4211
10 8 4.4486 -1.5269 -2.3434
11 7 6.0606 -2.8926 -1.6667
12 6 6.4335 -3.2091 -3.0476
13 6 6.7663 -1.9364 -3.8289
14 6 7.6170 -4.2116 -3.0883
15 6 6.9206 -5.5762 -2.9026
16 7 5.5165 -5.4080 -3.3047
17 6 4.5541 -6.3816 -3.2695
18 1 3.5469 -6.1570 -3.5881
19 6 4.8731 -7.6570 -2.8244
20 7 6.1005 -7.9306 -2.4357
21 14 3.5602 -8.9849 -2.7757
22 1 4.1521 -10.2479 -2.2660
23 1 2.4568 -8.5574 -1.8786
24 1 3.0281 -9.2053 -4.1445
25 6 5.3177 -4.0194 -3.7582
26 6 2.2461 -1.0922 -0.0005
27 8 1.8279 -2.2328 -0.0005
28 1 -0.3633 -0.0008 1.0277
29 1 -0.3633 0.8904 -0.5131
30 1 -0.3633 -0.8896 -0.5144
31 1 4.3676 -2.6243 0.5134
32 1 5.5181 -1.2662 0.5135
33 1 6.5412 -3.2999 -0.9290
34 1 6.9726 -2.1915 -4.8683
35 1 5.9201 -1.2508 -3.7840
36 1 7.6435 -1.4600 -3.3908
37 1 8.3132 -4.0197 -2.2719
38 1 8.1274 -4.1670 -4.0504
39 1 6.9729 -5.8798 -1.8570
40 1 7.3988 -6.3276 -3.5310
41 1 6.3233 -8.8219 -2.1242
42 1 5.4289 -3.9541 -4.8406
43 1 4.3352 -3.6581 -3.4545
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001569647696.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:38:58
Heat of formation + Delta-G solvation = -73.296611 kcal
Electronic energy + Delta-G solvation = -30553.818513 eV
Core-core repulsion = 26215.615915 eV
Total energy + Delta-G solvation = -4338.202598 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 338.147 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-44.55970 -41.33154 -40.50300 -40.06401 -38.89958 -37.72160 -36.39968 -35.66520
-33.79351 -32.14389 -31.02532 -30.28706 -27.98783 -27.51212 -26.83634 -25.43155
-23.59323 -23.13714 -22.29468 -21.76188 -20.56731 -19.38552 -19.12602 -18.80734
-18.34998 -17.91689 -17.78079 -17.20563 -16.77053 -16.55267 -16.47805 -16.24518
-15.94553 -15.81804 -15.60609 -15.20853 -14.79056 -14.27797 -14.20541 -13.99789
-13.88133 -13.72749 -13.59231 -13.51508 -13.28801 -13.04084 -12.79753 -12.74794
-12.33229 -12.13857 -12.05071 -12.03398 -11.85226 -11.69167 -11.51232 -11.42854
-11.16435 -10.70263 -10.55558 -10.05614 -8.86002 -7.85235 -5.18835 -0.95116
0.51378 0.83720 1.29195 1.33345 1.44842 1.46737 1.52017 1.53308
2.19273 2.48932 2.63652 3.32912 3.41664 3.49381 3.65074 3.74617
3.95364 4.00172 4.05717 4.12582 4.19141 4.20206 4.42553 4.58760
4.65177 4.69506 4.74709 4.78363 4.85511 4.92944 5.01537 5.09089
5.32308 5.35903 5.43323 5.44149 5.61920 5.69493 5.79271 5.92506
6.21064 6.29923 6.55145 7.12784 7.18709 7.78030 8.41681 9.23997
Molecular weight = 338.15amu
Principal moments of inertia in cm(-1)
A = 0.013561 B = 0.003612 C = 0.003041
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2064.219200 B = 7749.396316 C = 9204.485534
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.080 3.920
2 N -0.566 5.566
3 C 0.524 3.476
4 O -0.428 6.428
5 C 0.519 3.481
6 O -0.426 6.426
7 N -0.556 5.556
8 C 0.103 3.897
9 C 0.496 3.504
10 O -0.569 6.569
11 N -0.689 5.689
12 C 0.168 3.832
13 C -0.142 4.142
14 C -0.127 4.127
15 C 0.184 3.816
16 N -0.620 5.620
17 C -0.244 4.244
18 H 0.065 0.935
19 C -0.054 4.054
20 N -0.943 5.943
21 Si 0.970 3.030
22 H -0.288 1.288
23 H -0.281 1.281
24 H -0.282 1.282
25 C 0.132 3.868
26 C 0.715 3.285
27 O -0.505 6.505
28 H 0.104 0.896
29 H 0.109 0.891
30 H 0.097 0.903
31 H 0.149 0.851
32 H 0.171 0.829
33 H 0.415 0.585
34 H 0.070 0.930
35 H 0.059 0.941
36 H 0.077 0.923
37 H 0.102 0.898
38 H 0.088 0.912
39 H 0.023 0.977
40 H 0.007 0.993
41 H 0.248 0.752
42 H 0.021 0.979
43 H 0.023 0.977
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.789 17.141 8.801 19.469
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 N -0.315 5.315
3 C 0.304 3.696
4 O -0.294 6.294
5 C 0.300 3.700
6 O -0.291 6.291
7 N -0.304 5.304
8 C -0.021 4.021
9 C 0.282 3.718
10 O -0.448 6.448
11 N -0.341 5.341
12 C 0.081 3.919
13 C -0.201 4.201
14 C -0.165 4.165
15 C 0.059 3.941
16 N -0.347 5.347
17 C -0.373 4.373
18 H 0.083 0.917
19 C -0.248 4.248
20 N -0.591 5.591
21 Si 0.799 3.201
22 H -0.214 1.214
23 H -0.208 1.208
24 H -0.209 1.209
25 C 0.005 3.995
26 C 0.418 3.582
27 O -0.374 6.374
28 H 0.122 0.878
29 H 0.128 0.872
30 H 0.115 0.885
31 H 0.167 0.833
32 H 0.188 0.812
33 H 0.252 0.748
34 H 0.089 0.911
35 H 0.078 0.922
36 H 0.096 0.904
37 H 0.121 0.879
38 H 0.107 0.893
39 H 0.041 0.959
40 H 0.025 0.975
41 H 0.057 0.943
42 H 0.039 0.961
43 H 0.042 0.958
Dipole moment (debyes) X Y Z Total
from point charges -3.119 17.630 8.209 19.695
hybrid contribution -0.609 -1.533 -0.023 1.650
sum -3.728 16.096 8.186 18.439
Atomic orbital electron populations
1.22343 0.71001 1.06321 1.06156 1.46614 1.11111 1.05954 1.67808
1.20586 0.87374 0.85430 0.76180 1.90840 1.79573 1.17099 1.41873
1.20892 0.91027 0.82237 0.75806 1.90833 1.34088 1.62861 1.41330
1.46139 1.07706 1.08483 1.68028 1.21858 0.89681 0.95630 0.94907
1.21114 0.79783 0.78971 0.91981 1.90663 1.53380 1.53894 1.46864
1.45629 1.34795 1.44896 1.08743 1.21373 0.94353 0.94457 0.81727
1.21940 1.02319 0.95877 0.99916 1.23098 0.96041 0.93369 1.03993
1.20976 0.82924 0.92760 0.97412 1.44678 1.07344 1.06671 1.75971
1.19236 0.90642 0.90339 1.37049 0.91686 1.25451 0.98677 0.99092
1.01536 1.70121 1.18403 1.20422 1.50194 0.85285 0.78453 0.78634
0.77752 1.21375 1.20761 1.20851 1.21989 0.97090 0.84713 0.95663
1.15936 0.80994 0.84988 0.76247 1.91084 1.76320 1.19495 1.50514
0.87789 0.87242 0.88481 0.83320 0.81178 0.74834 0.91133 0.92201
0.90399 0.87916 0.89301 0.95867 0.97482 0.94255 0.96093 0.95835
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.92 10.89 127.77 1.39 2.31 16
2 N -0.57 -10.69 3.06 -797.76 -2.44 -13.14 16
3 C 0.52 10.96 8.31 87.39 0.73 11.68 16
4 O -0.43 -10.19 17.88 -3.08 -0.06 -10.25 16
5 C 0.52 11.71 8.31 87.39 0.73 12.44 16
6 O -0.43 -11.02 17.88 -3.08 -0.06 -11.07 16
7 N -0.56 -12.35 2.15 -778.32 -1.67 -14.02 16
8 C 0.10 1.99 6.34 85.64 0.54 2.54 16
9 C 0.50 14.17 7.28 87.66 0.64 14.80 16
10 O -0.57 -20.49 13.27 -3.02 -0.04 -20.53 16
11 N -0.69 -19.14 5.19 -416.31 -2.16 -21.30 16
12 C 0.17 5.42 0.82 5.07 0.00 5.42 16
13 C -0.14 -3.93 8.59 71.98 0.62 -3.32 16
14 C -0.13 -3.99 5.97 31.78 0.19 -3.80 16
15 C 0.18 8.41 5.37 86.73 0.47 8.88 16
16 N -0.62 -31.66 3.39 -691.55 -2.35 -34.01 16
17 C -0.24 -13.95 10.28 84.03 0.86 -13.08 16
18 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16
19 C -0.05 -3.05 5.49 84.86 0.47 -2.59 16
20 N -0.94 -54.85 10.31 21.65 0.22 -54.63 16
21 Si 0.97 46.09 29.55 68.60 2.03 48.12 16
22 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16
23 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16
24 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16
25 C 0.13 5.71 6.18 86.93 0.54 6.25 16
26 C 0.72 17.09 8.32 179.37 1.49 18.58 16
27 O -0.50 -15.28 17.27 -3.68 -0.06 -15.35 16
28 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16
29 H 0.11 0.95 8.10 -2.39 -0.02 0.93 16
30 H 0.10 1.18 7.98 -2.39 -0.02 1.16 16
31 H 0.15 2.55 7.98 -2.39 -0.02 2.53 16
32 H 0.17 1.92 8.09 -2.39 -0.02 1.90 16
33 H 0.41 9.27 8.51 -92.71 -0.79 8.48 16
34 H 0.07 1.85 8.07 -2.39 -0.02 1.83 16
35 H 0.06 1.91 5.92 -2.39 -0.01 1.89 16
36 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16
37 H 0.10 2.53 8.09 -2.39 -0.02 2.51 16
38 H 0.09 2.59 8.04 -2.39 -0.02 2.57 16
39 H 0.02 1.15 7.38 -2.39 -0.02 1.13 16
40 H 0.01 0.37 7.50 -2.39 -0.02 0.35 16
41 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16
42 H 0.02 0.93 7.99 -2.39 -0.02 0.91 16
43 H 0.02 1.12 6.89 -2.38 -0.02 1.11 16
Total: -1.00 -79.23 366.36 2.36 -76.88
By element:
Atomic # 1 Polarization: 8.90 SS G_CDS: 0.28 Total: 9.18 kcal
Atomic # 6 Polarization: 51.46 SS G_CDS: 8.66 Total: 60.12 kcal
Atomic # 7 Polarization: -128.70 SS G_CDS: -8.40 Total: -137.10 kcal
Atomic # 8 Polarization: -56.99 SS G_CDS: -0.21 Total: -57.20 kcal
Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal
Total: -79.23 2.36 -76.88 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001569647696.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.580 kcal
(2) G-P(sol) polarization free energy of solvation -79.233 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.654 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.357 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.876 kcal
(6) G-S(sol) free energy of system = (1) + (5) -73.297 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds