Wall clock time and date at job start Tue Mar 31 2020 21:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.35065 * 125.56329 * 2 1 4 4 O 1.21297 * 127.28445 * 0.05899 * 3 2 1 5 5 C 1.49980 * 105.42987 * 179.83371 * 3 2 1 6 6 O 1.21296 * 127.28840 * 180.24540 * 5 3 2 7 7 N 1.35070 * 105.43124 * 0.33162 * 5 3 2 8 8 C 1.46494 * 125.56836 * 179.97438 * 7 5 3 9 9 C 1.50705 * 109.47124 * 269.69597 * 8 7 5 10 10 O 1.21277 * 120.00033 * 359.97438 * 9 8 7 11 11 N 1.34773 * 119.99863 * 180.02562 * 9 8 7 12 12 C 1.46500 * 119.99841 * 179.97438 * 11 9 8 13 13 C 1.53001 * 110.91697 * 56.09677 * 12 11 9 14 14 C 1.55157 * 111.00466 * 179.97438 * 12 11 9 15 15 C 1.54325 * 102.94184 * 82.57497 * 14 12 11 16 16 N 1.47022 * 107.26948 * 22.19107 * 15 14 12 17 17 C 1.36945 * 125.64832 * 181.02381 * 16 15 14 18 18 H 1.07997 * 119.99756 * 180.02562 * 17 16 15 19 19 C 1.38805 * 119.99878 * 0.02562 * 17 16 15 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47187 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 300.00154 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00200 * 21 19 17 25 25 C 1.47423 * 108.70390 * 1.29074 * 16 15 14 26 26 C 1.34266 * 125.56786 * 180.02562 * 2 1 3 27 27 O 1.21488 * 124.30041 * 359.97438 * 26 2 1 28 28 H 1.09000 * 109.47044 * 269.95760 * 1 2 3 29 29 H 1.08997 * 109.46927 * 29.95479 * 1 2 3 30 30 H 1.08998 * 109.47157 * 149.96038 * 1 2 3 31 31 H 1.08994 * 109.47420 * 149.69323 * 8 7 5 32 32 H 1.09002 * 109.46828 * 29.69181 * 8 7 5 33 33 H 0.97003 * 120.00176 * 359.97438 * 11 9 8 34 34 H 1.08996 * 109.47690 * 183.89832 * 13 12 11 35 35 H 1.08999 * 109.46882 * 303.90238 * 13 12 11 36 36 H 1.09005 * 109.47260 * 63.90076 * 13 12 11 37 37 H 1.09000 * 110.72140 * 324.21327 * 14 12 11 38 38 H 1.08998 * 110.72520 * 200.93646 * 14 12 11 39 39 H 1.09002 * 109.88274 * 262.77538 * 15 14 12 40 40 H 1.09000 * 110.01178 * 141.68100 * 15 14 12 41 41 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 42 42 H 1.09000 * 110.37068 * 94.48354 * 25 16 15 43 43 H 1.09005 * 110.36651 * 216.80519 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2506 1.0987 0.0000 4 8 1.8929 2.2577 0.0010 5 6 3.6588 0.5825 0.0042 6 8 4.6809 1.2356 0.0096 7 7 3.5481 -0.7637 -0.0013 8 6 4.6658 -1.7106 -0.0005 9 6 5.0498 -2.0357 -1.4211 10 8 4.4486 -1.5269 -2.3434 11 7 6.0606 -2.8926 -1.6667 12 6 6.4335 -3.2091 -3.0476 13 6 6.7663 -1.9364 -3.8289 14 6 7.6170 -4.2116 -3.0883 15 6 6.9206 -5.5762 -2.9026 16 7 5.5165 -5.4080 -3.3047 17 6 4.5541 -6.3816 -3.2695 18 1 3.5469 -6.1570 -3.5881 19 6 4.8731 -7.6570 -2.8244 20 7 6.1005 -7.9306 -2.4357 21 14 3.5602 -8.9849 -2.7757 22 1 4.1521 -10.2479 -2.2660 23 1 2.4568 -8.5574 -1.8786 24 1 3.0281 -9.2053 -4.1445 25 6 5.3177 -4.0194 -3.7582 26 6 2.2461 -1.0922 -0.0005 27 8 1.8279 -2.2328 -0.0005 28 1 -0.3633 -0.0008 1.0277 29 1 -0.3633 0.8904 -0.5131 30 1 -0.3633 -0.8896 -0.5144 31 1 4.3676 -2.6243 0.5134 32 1 5.5181 -1.2662 0.5135 33 1 6.5412 -3.2999 -0.9290 34 1 6.9726 -2.1915 -4.8683 35 1 5.9201 -1.2508 -3.7840 36 1 7.6435 -1.4600 -3.3908 37 1 8.3132 -4.0197 -2.2719 38 1 8.1274 -4.1670 -4.0504 39 1 6.9729 -5.8798 -1.8570 40 1 7.3988 -6.3276 -3.5310 41 1 6.3233 -8.8219 -2.1242 42 1 5.4289 -3.9541 -4.8406 43 1 4.3352 -3.6581 -3.4545 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569647696.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:58 Heat of formation + Delta-G solvation = -73.296611 kcal Electronic energy + Delta-G solvation = -30553.818513 eV Core-core repulsion = 26215.615915 eV Total energy + Delta-G solvation = -4338.202598 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.55970 -41.33154 -40.50300 -40.06401 -38.89958 -37.72160 -36.39968 -35.66520 -33.79351 -32.14389 -31.02532 -30.28706 -27.98783 -27.51212 -26.83634 -25.43155 -23.59323 -23.13714 -22.29468 -21.76188 -20.56731 -19.38552 -19.12602 -18.80734 -18.34998 -17.91689 -17.78079 -17.20563 -16.77053 -16.55267 -16.47805 -16.24518 -15.94553 -15.81804 -15.60609 -15.20853 -14.79056 -14.27797 -14.20541 -13.99789 -13.88133 -13.72749 -13.59231 -13.51508 -13.28801 -13.04084 -12.79753 -12.74794 -12.33229 -12.13857 -12.05071 -12.03398 -11.85226 -11.69167 -11.51232 -11.42854 -11.16435 -10.70263 -10.55558 -10.05614 -8.86002 -7.85235 -5.18835 -0.95116 0.51378 0.83720 1.29195 1.33345 1.44842 1.46737 1.52017 1.53308 2.19273 2.48932 2.63652 3.32912 3.41664 3.49381 3.65074 3.74617 3.95364 4.00172 4.05717 4.12582 4.19141 4.20206 4.42553 4.58760 4.65177 4.69506 4.74709 4.78363 4.85511 4.92944 5.01537 5.09089 5.32308 5.35903 5.43323 5.44149 5.61920 5.69493 5.79271 5.92506 6.21064 6.29923 6.55145 7.12784 7.18709 7.78030 8.41681 9.23997 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013561 B = 0.003612 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.219200 B = 7749.396316 C = 9204.485534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.566 5.566 3 C 0.524 3.476 4 O -0.428 6.428 5 C 0.519 3.481 6 O -0.426 6.426 7 N -0.556 5.556 8 C 0.103 3.897 9 C 0.496 3.504 10 O -0.569 6.569 11 N -0.689 5.689 12 C 0.168 3.832 13 C -0.142 4.142 14 C -0.127 4.127 15 C 0.184 3.816 16 N -0.620 5.620 17 C -0.244 4.244 18 H 0.065 0.935 19 C -0.054 4.054 20 N -0.943 5.943 21 Si 0.970 3.030 22 H -0.288 1.288 23 H -0.281 1.281 24 H -0.282 1.282 25 C 0.132 3.868 26 C 0.715 3.285 27 O -0.505 6.505 28 H 0.104 0.896 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.149 0.851 32 H 0.171 0.829 33 H 0.415 0.585 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.023 0.977 40 H 0.007 0.993 41 H 0.248 0.752 42 H 0.021 0.979 43 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.789 17.141 8.801 19.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.315 5.315 3 C 0.304 3.696 4 O -0.294 6.294 5 C 0.300 3.700 6 O -0.291 6.291 7 N -0.304 5.304 8 C -0.021 4.021 9 C 0.282 3.718 10 O -0.448 6.448 11 N -0.341 5.341 12 C 0.081 3.919 13 C -0.201 4.201 14 C -0.165 4.165 15 C 0.059 3.941 16 N -0.347 5.347 17 C -0.373 4.373 18 H 0.083 0.917 19 C -0.248 4.248 20 N -0.591 5.591 21 Si 0.799 3.201 22 H -0.214 1.214 23 H -0.208 1.208 24 H -0.209 1.209 25 C 0.005 3.995 26 C 0.418 3.582 27 O -0.374 6.374 28 H 0.122 0.878 29 H 0.128 0.872 30 H 0.115 0.885 31 H 0.167 0.833 32 H 0.188 0.812 33 H 0.252 0.748 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.121 0.879 38 H 0.107 0.893 39 H 0.041 0.959 40 H 0.025 0.975 41 H 0.057 0.943 42 H 0.039 0.961 43 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -3.119 17.630 8.209 19.695 hybrid contribution -0.609 -1.533 -0.023 1.650 sum -3.728 16.096 8.186 18.439 Atomic orbital electron populations 1.22343 0.71001 1.06321 1.06156 1.46614 1.11111 1.05954 1.67808 1.20586 0.87374 0.85430 0.76180 1.90840 1.79573 1.17099 1.41873 1.20892 0.91027 0.82237 0.75806 1.90833 1.34088 1.62861 1.41330 1.46139 1.07706 1.08483 1.68028 1.21858 0.89681 0.95630 0.94907 1.21114 0.79783 0.78971 0.91981 1.90663 1.53380 1.53894 1.46864 1.45629 1.34795 1.44896 1.08743 1.21373 0.94353 0.94457 0.81727 1.21940 1.02319 0.95877 0.99916 1.23098 0.96041 0.93369 1.03993 1.20976 0.82924 0.92760 0.97412 1.44678 1.07344 1.06671 1.75971 1.19236 0.90642 0.90339 1.37049 0.91686 1.25451 0.98677 0.99092 1.01536 1.70121 1.18403 1.20422 1.50194 0.85285 0.78453 0.78634 0.77752 1.21375 1.20761 1.20851 1.21989 0.97090 0.84713 0.95663 1.15936 0.80994 0.84988 0.76247 1.91084 1.76320 1.19495 1.50514 0.87789 0.87242 0.88481 0.83320 0.81178 0.74834 0.91133 0.92201 0.90399 0.87916 0.89301 0.95867 0.97482 0.94255 0.96093 0.95835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.92 10.89 127.77 1.39 2.31 16 2 N -0.57 -10.69 3.06 -797.76 -2.44 -13.14 16 3 C 0.52 10.96 8.31 87.39 0.73 11.68 16 4 O -0.43 -10.19 17.88 -3.08 -0.06 -10.25 16 5 C 0.52 11.71 8.31 87.39 0.73 12.44 16 6 O -0.43 -11.02 17.88 -3.08 -0.06 -11.07 16 7 N -0.56 -12.35 2.15 -778.32 -1.67 -14.02 16 8 C 0.10 1.99 6.34 85.64 0.54 2.54 16 9 C 0.50 14.17 7.28 87.66 0.64 14.80 16 10 O -0.57 -20.49 13.27 -3.02 -0.04 -20.53 16 11 N -0.69 -19.14 5.19 -416.31 -2.16 -21.30 16 12 C 0.17 5.42 0.82 5.07 0.00 5.42 16 13 C -0.14 -3.93 8.59 71.98 0.62 -3.32 16 14 C -0.13 -3.99 5.97 31.78 0.19 -3.80 16 15 C 0.18 8.41 5.37 86.73 0.47 8.88 16 16 N -0.62 -31.66 3.39 -691.55 -2.35 -34.01 16 17 C -0.24 -13.95 10.28 84.03 0.86 -13.08 16 18 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 19 C -0.05 -3.05 5.49 84.86 0.47 -2.59 16 20 N -0.94 -54.85 10.31 21.65 0.22 -54.63 16 21 Si 0.97 46.09 29.55 68.60 2.03 48.12 16 22 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 23 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 24 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 25 C 0.13 5.71 6.18 86.93 0.54 6.25 16 26 C 0.72 17.09 8.32 179.37 1.49 18.58 16 27 O -0.50 -15.28 17.27 -3.68 -0.06 -15.35 16 28 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.11 0.95 8.10 -2.39 -0.02 0.93 16 30 H 0.10 1.18 7.98 -2.39 -0.02 1.16 16 31 H 0.15 2.55 7.98 -2.39 -0.02 2.53 16 32 H 0.17 1.92 8.09 -2.39 -0.02 1.90 16 33 H 0.41 9.27 8.51 -92.71 -0.79 8.48 16 34 H 0.07 1.85 8.07 -2.39 -0.02 1.83 16 35 H 0.06 1.91 5.92 -2.39 -0.01 1.89 16 36 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.10 2.53 8.09 -2.39 -0.02 2.51 16 38 H 0.09 2.59 8.04 -2.39 -0.02 2.57 16 39 H 0.02 1.15 7.38 -2.39 -0.02 1.13 16 40 H 0.01 0.37 7.50 -2.39 -0.02 0.35 16 41 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 42 H 0.02 0.93 7.99 -2.39 -0.02 0.91 16 43 H 0.02 1.12 6.89 -2.38 -0.02 1.11 16 Total: -1.00 -79.23 366.36 2.36 -76.88 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 0.28 Total: 9.18 kcal Atomic # 6 Polarization: 51.46 SS G_CDS: 8.66 Total: 60.12 kcal Atomic # 7 Polarization: -128.70 SS G_CDS: -8.40 Total: -137.10 kcal Atomic # 8 Polarization: -56.99 SS G_CDS: -0.21 Total: -57.20 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -79.23 2.36 -76.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569647696.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.580 kcal (2) G-P(sol) polarization free energy of solvation -79.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds