Wall clock time and date at job start Tue Mar 31 2020 21:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34735 * 116.99774 * 2 1 4 4 O 1.21490 * 120.00068 * 0.02562 * 3 2 1 5 5 C 1.47577 * 119.99904 * 180.02562 * 3 2 1 6 6 C 1.39650 * 120.14332 * 90.01679 * 5 3 2 7 7 C 1.50704 * 120.09766 * 0.02562 * 6 5 3 8 8 C 1.38462 * 119.80309 * 179.97438 * 6 5 3 9 9 N 1.40061 * 119.96180 * 180.30248 * 8 6 5 10 10 C 1.34773 * 119.99682 * 144.99313 * 9 8 6 11 11 O 1.21289 * 120.00348 * 4.50915 * 10 9 8 12 12 C 1.50705 * 119.99681 * 184.50581 * 10 9 8 13 13 H 1.09004 * 109.47094 * 40.00413 * 12 10 9 14 14 N 1.46902 * 109.47032 * 160.00232 * 12 10 9 15 15 C 1.52999 * 109.47177 * 280.00051 * 12 10 9 16 16 C 1.52999 * 109.47019 * 174.99934 * 15 12 10 17 17 C 1.50701 * 109.46913 * 180.02562 * 16 15 12 18 18 H 1.07994 * 120.00213 * 0.02562 * 17 16 15 19 19 C 1.37883 * 120.00040 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99949 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00053 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46932 * 60.00218 * 21 19 17 23 23 H 1.48500 * 109.46949 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46874 * 299.99952 * 21 19 17 25 25 C 1.39051 * 120.07867 * 0.02944 * 8 6 5 26 26 C 1.38118 * 120.28258 * 359.97438 * 25 8 6 27 27 C 1.38326 * 120.20065 * 359.97438 * 26 25 8 28 28 F 1.35097 * 120.04091 * 180.02562 * 27 26 25 29 29 H 1.09000 * 109.46848 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.47026 * 300.00219 * 1 2 3 31 31 H 1.09003 * 109.46997 * 59.99342 * 1 2 3 32 32 H 1.08999 * 109.47151 * 269.95209 * 7 6 5 33 33 H 1.08996 * 109.46792 * 29.95619 * 7 6 5 34 34 H 1.09001 * 109.47068 * 149.94857 * 7 6 5 35 35 H 0.96994 * 119.99653 * 324.99622 * 9 8 6 36 36 H 1.00903 * 110.99716 * 296.04669 * 14 12 10 37 37 H 1.00900 * 111.00278 * 60.00074 * 14 12 10 38 38 H 1.09002 * 109.47294 * 295.00334 * 15 12 10 39 39 H 1.09004 * 109.47048 * 54.99722 * 15 12 10 40 40 H 1.08996 * 109.47476 * 299.99872 * 16 15 12 41 41 H 1.08999 * 109.47418 * 60.00499 * 16 15 12 42 42 H 0.97000 * 120.00172 * 179.97438 * 20 19 17 43 43 H 1.08008 * 119.85794 * 179.97438 * 25 8 6 44 44 H 1.08004 * 119.89451 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2005 0.0000 4 8 1.4019 2.2194 0.0005 5 6 3.5374 1.2778 -0.0006 6 6 4.2372 1.3151 -1.2085 7 6 3.4896 1.2772 -2.5165 8 6 5.6199 1.3881 -1.2008 9 7 6.3247 1.4321 -2.4103 10 6 7.4531 2.1628 -2.5064 11 8 7.9029 2.7159 -1.5251 12 6 8.1560 2.2927 -3.8332 13 1 7.4170 2.4072 -4.6262 14 7 9.0344 3.4698 -3.8088 15 6 8.9920 1.0378 -4.0924 16 6 9.6057 1.1139 -5.4918 17 6 10.4286 -0.1225 -5.7473 18 1 10.5058 -0.8863 -4.9878 19 6 11.0821 -0.2790 -6.9513 20 7 10.9877 0.6509 -7.8765 21 14 12.1016 -1.8119 -7.2683 22 1 11.2329 -3.0125 -7.1729 23 1 12.6973 -1.7379 -8.6266 24 1 13.1854 -1.9033 -6.2573 25 6 6.3092 1.4236 0.0063 26 6 5.6205 1.3868 1.2030 27 6 4.2391 1.3149 1.2088 28 9 3.5687 1.2795 2.3812 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 3.3635 0.2418 -2.8330 33 1 2.5110 1.7400 -2.3892 34 1 4.0536 1.8224 -3.2733 35 1 6.0007 0.9368 -3.1787 36 1 8.4989 4.3185 -3.7034 37 1 9.7289 3.3878 -3.0814 38 1 9.7873 0.9712 -3.3499 39 1 8.3550 0.1560 -4.0223 40 1 8.8104 1.1803 -6.2342 41 1 10.2427 1.9956 -5.5618 42 1 11.4477 0.5410 -8.7234 43 1 7.3878 1.4801 0.0081 44 1 6.1622 1.4150 2.1369 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578850331.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:38 Heat of formation + Delta-G solvation = -146.491565 kcal Electronic energy + Delta-G solvation = -28788.733400 eV Core-core repulsion = 24427.436869 eV Total energy + Delta-G solvation = -4361.296531 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.31827 -41.24812 -40.57722 -38.84130 -36.82044 -35.46026 -35.01715 -33.29308 -32.88450 -30.51732 -30.18572 -28.29474 -27.59295 -26.42706 -24.66018 -23.90532 -21.98204 -21.70231 -20.70887 -20.00504 -18.73634 -17.93163 -17.61683 -17.54196 -17.01886 -16.53113 -16.26953 -16.13529 -15.93745 -15.45280 -14.91335 -14.71207 -14.42045 -14.30739 -14.16479 -13.96400 -13.82688 -13.65600 -13.39111 -13.20270 -12.65265 -12.44479 -12.41579 -12.28738 -12.13148 -11.88148 -11.67535 -11.22996 -11.10735 -10.93011 -10.81386 -10.66980 -10.51128 -10.24719 -9.89903 -9.47951 -9.39257 -9.09092 -8.55609 -8.38552 -8.29601 -5.99626 -4.02339 0.47291 0.65515 1.59759 2.18372 2.41584 2.83060 3.11801 3.32186 3.37350 3.39260 3.67970 4.17694 4.23270 4.43863 4.49674 4.59199 4.66354 4.69501 4.78026 4.83274 4.99399 5.08125 5.09286 5.15446 5.23396 5.33401 5.36809 5.53521 5.62153 5.63608 5.77513 5.79380 5.87360 6.01738 6.28153 6.47443 6.51670 6.95055 7.07108 7.20250 7.32403 7.63746 7.68358 7.86974 7.92671 8.05258 8.40710 9.05249 9.61275 11.11109 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016981 B = 0.002267 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.532079 B =12350.673601 C =12883.603925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.347 6.347 3 C 0.524 3.476 4 O -0.488 6.488 5 C -0.129 4.129 6 C -0.046 4.046 7 C -0.127 4.127 8 C 0.144 3.856 9 N -0.670 5.670 10 C 0.485 3.515 11 O -0.531 6.531 12 C 0.081 3.919 13 H 0.103 0.897 14 N -0.804 5.804 15 C -0.097 4.097 16 C 0.032 3.968 17 C -0.525 4.525 18 H 0.052 0.948 19 C 0.059 3.941 20 N -0.892 5.892 21 Si 0.890 3.110 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.277 1.277 25 C -0.066 4.066 26 C -0.137 4.137 27 C 0.123 3.877 28 F -0.132 7.132 29 H 0.106 0.894 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.417 0.583 36 H 0.336 0.664 37 H 0.350 0.650 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.014 0.986 41 H 0.036 0.964 42 H 0.261 0.739 43 H 0.159 0.841 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.103 0.064 15.657 24.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.263 6.263 3 C 0.365 3.635 4 O -0.374 6.374 5 C -0.132 4.132 6 C -0.049 4.049 7 C -0.183 4.183 8 C 0.048 3.952 9 N -0.316 5.316 10 C 0.273 3.727 11 O -0.406 6.406 12 C -0.035 4.035 13 H 0.121 0.879 14 N -0.332 5.332 15 C -0.136 4.136 16 C -0.005 4.005 17 C -0.563 4.563 18 H 0.070 0.930 19 C -0.143 4.143 20 N -0.531 5.531 21 Si 0.718 3.282 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.086 4.086 26 C -0.156 4.156 27 C 0.102 3.898 28 F -0.110 7.110 29 H 0.124 0.876 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.255 0.745 36 H 0.148 0.852 37 H 0.164 0.836 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.032 0.968 41 H 0.054 0.946 42 H 0.070 0.930 43 H 0.176 0.824 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -18.700 0.633 15.386 24.225 hybrid contribution -0.388 -0.887 0.706 1.198 sum -19.088 -0.254 16.093 24.968 Atomic orbital electron populations 1.23377 0.75697 1.04163 1.02849 1.86680 1.23778 1.32219 1.83659 1.20883 0.88480 0.81958 0.72139 1.90892 1.66296 1.36067 1.44178 1.18590 0.89701 1.11703 0.93190 1.19416 0.91730 0.99632 0.94088 1.20915 1.00356 1.03750 0.93295 1.17472 0.89393 1.01234 0.87090 1.43870 1.26102 1.49468 1.12206 1.23244 0.79273 0.76186 0.94018 1.90648 1.64292 1.46659 1.39025 1.21928 0.95460 0.95629 0.90445 0.87883 1.58983 1.16716 1.02548 1.54962 1.21717 0.97614 0.91359 1.02866 1.19012 0.95780 0.97681 0.88067 1.21215 1.30142 1.04779 1.00206 0.93002 1.24989 0.96643 0.96333 0.96305 1.69955 1.43383 1.33522 1.06225 0.86705 0.80632 0.83613 0.77299 1.20341 1.21321 1.20298 1.21432 1.02206 0.95464 0.89541 1.21001 0.91134 1.03338 1.00156 1.17458 0.90098 1.02572 0.79643 1.91528 1.80553 1.93674 1.45250 0.87595 0.91611 0.91543 0.89405 0.90894 0.89925 0.74511 0.85175 0.83597 0.92567 0.92658 0.96798 0.94589 0.92971 0.82387 0.83305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.28 16 2 O -0.35 -3.52 10.58 -40.59 -0.43 -3.95 16 3 C 0.52 6.26 5.50 34.54 0.19 6.45 16 4 O -0.49 -6.86 16.89 -19.26 -0.33 -7.18 16 5 C -0.13 -1.51 5.76 -104.95 -0.60 -2.11 16 6 C -0.05 -0.48 5.93 -104.01 -0.62 -1.10 16 7 C -0.13 -1.04 9.08 36.01 0.33 -0.71 16 8 C 0.14 1.62 6.28 -83.71 -0.53 1.09 16 9 N -0.67 -7.26 4.74 -9.88 -0.05 -7.30 16 10 C 0.49 6.46 6.91 -10.98 -0.08 6.39 16 11 O -0.53 -8.17 13.66 5.55 0.08 -8.10 16 12 C 0.08 1.18 3.15 -68.86 -0.22 0.97 16 13 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 14 N -0.80 -12.04 8.44 -5.65 -0.05 -12.09 16 15 C -0.10 -1.76 4.78 -26.73 -0.13 -1.88 16 16 C 0.03 0.76 4.86 -27.88 -0.14 0.62 16 17 C -0.53 -14.19 9.11 -34.44 -0.31 -14.50 16 18 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 21 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 C -0.07 -0.76 8.68 -39.32 -0.34 -1.10 16 26 C -0.14 -1.41 10.00 -39.59 -0.40 -1.81 16 27 C 0.12 1.41 7.29 -38.94 -0.28 1.12 16 28 F -0.13 -1.57 16.82 2.25 0.04 -1.53 16 29 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.64 7.08 -51.93 -0.37 0.27 16 34 H 0.08 0.60 7.16 -51.93 -0.37 0.23 16 35 H 0.42 3.58 7.84 -40.82 -0.32 3.26 16 36 H 0.34 4.34 9.06 -39.29 -0.36 3.98 16 37 H 0.35 5.28 8.58 -39.29 -0.34 4.94 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.04 0.94 7.75 -51.93 -0.40 0.54 16 42 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.16 1.95 6.20 -52.48 -0.33 1.62 16 44 H 0.15 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 381.55 15.07 5.75 5.75 Total: -1.00 -33.13 381.55 -7.25 -40.37 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -5.83 Total: 7.06 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -2.15 Total: -3.76 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.64 Total: -44.77 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.68 Total: -19.23 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.13 -7.25 -40.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578850331.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.119 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds