Wall clock time and date at job start Tue Mar 31 2020 21:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34735 * 116.99774 * 2 1 4 4 O 1.21490 * 120.00068 * 0.02562 * 3 2 1 5 5 C 1.47577 * 119.99904 * 180.02562 * 3 2 1 6 6 C 1.39650 * 120.14332 * 90.01679 * 5 3 2 7 7 C 1.50704 * 120.09766 * 0.02562 * 6 5 3 8 8 C 1.38462 * 119.80309 * 179.97438 * 6 5 3 9 9 N 1.40061 * 119.96180 * 180.30248 * 8 6 5 10 10 C 1.34773 * 119.99682 * 144.99313 * 9 8 6 11 11 O 1.21289 * 120.00348 * 4.50915 * 10 9 8 12 12 C 1.50705 * 119.99681 * 184.50581 * 10 9 8 13 13 H 1.09004 * 109.47094 * 40.00413 * 12 10 9 14 14 N 1.46902 * 109.47032 * 160.00232 * 12 10 9 15 15 C 1.52999 * 109.47177 * 280.00051 * 12 10 9 16 16 C 1.52999 * 109.47019 * 174.99934 * 15 12 10 17 17 C 1.50701 * 109.46913 * 180.02562 * 16 15 12 18 18 H 1.07994 * 120.00213 * 0.02562 * 17 16 15 19 19 C 1.37883 * 120.00040 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99949 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00053 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46932 * 60.00218 * 21 19 17 23 23 H 1.48500 * 109.46949 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46874 * 299.99952 * 21 19 17 25 25 C 1.39051 * 120.07867 * 0.02944 * 8 6 5 26 26 C 1.38118 * 120.28258 * 359.97438 * 25 8 6 27 27 C 1.38326 * 120.20065 * 359.97438 * 26 25 8 28 28 F 1.35097 * 120.04091 * 180.02562 * 27 26 25 29 29 H 1.09000 * 109.46848 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.47026 * 300.00219 * 1 2 3 31 31 H 1.09003 * 109.46997 * 59.99342 * 1 2 3 32 32 H 1.08999 * 109.47151 * 269.95209 * 7 6 5 33 33 H 1.08996 * 109.46792 * 29.95619 * 7 6 5 34 34 H 1.09001 * 109.47068 * 149.94857 * 7 6 5 35 35 H 0.96994 * 119.99653 * 324.99622 * 9 8 6 36 36 H 1.00903 * 110.99716 * 296.04669 * 14 12 10 37 37 H 1.00900 * 111.00278 * 60.00074 * 14 12 10 38 38 H 1.09002 * 109.47294 * 295.00334 * 15 12 10 39 39 H 1.09004 * 109.47048 * 54.99722 * 15 12 10 40 40 H 1.08996 * 109.47476 * 299.99872 * 16 15 12 41 41 H 1.08999 * 109.47418 * 60.00499 * 16 15 12 42 42 H 0.97000 * 120.00172 * 179.97438 * 20 19 17 43 43 H 1.08008 * 119.85794 * 179.97438 * 25 8 6 44 44 H 1.08004 * 119.89451 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2005 0.0000 4 8 1.4019 2.2194 0.0005 5 6 3.5374 1.2778 -0.0006 6 6 4.2372 1.3151 -1.2085 7 6 3.4896 1.2772 -2.5165 8 6 5.6199 1.3881 -1.2008 9 7 6.3247 1.4321 -2.4103 10 6 7.4531 2.1628 -2.5064 11 8 7.9029 2.7159 -1.5251 12 6 8.1560 2.2927 -3.8332 13 1 7.4170 2.4072 -4.6262 14 7 9.0344 3.4698 -3.8088 15 6 8.9920 1.0378 -4.0924 16 6 9.6057 1.1139 -5.4918 17 6 10.4286 -0.1225 -5.7473 18 1 10.5058 -0.8863 -4.9878 19 6 11.0821 -0.2790 -6.9513 20 7 10.9877 0.6509 -7.8765 21 14 12.1016 -1.8119 -7.2683 22 1 11.2329 -3.0125 -7.1729 23 1 12.6973 -1.7379 -8.6266 24 1 13.1854 -1.9033 -6.2573 25 6 6.3092 1.4236 0.0063 26 6 5.6205 1.3868 1.2030 27 6 4.2391 1.3149 1.2088 28 9 3.5687 1.2795 2.3812 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 3.3635 0.2418 -2.8330 33 1 2.5110 1.7400 -2.3892 34 1 4.0536 1.8224 -3.2733 35 1 6.0007 0.9368 -3.1787 36 1 8.4989 4.3185 -3.7034 37 1 9.7289 3.3878 -3.0814 38 1 9.7873 0.9712 -3.3499 39 1 8.3550 0.1560 -4.0223 40 1 8.8104 1.1803 -6.2342 41 1 10.2427 1.9956 -5.5618 42 1 11.4477 0.5410 -8.7234 43 1 7.3878 1.4801 0.0081 44 1 6.1622 1.4150 2.1369 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578850331.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:37 Heat of formation + Delta-G solvation = -168.183334 kcal Electronic energy + Delta-G solvation = -28789.674026 eV Core-core repulsion = 24427.436869 eV Total energy + Delta-G solvation = -4362.237156 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -50.21801 -42.16158 -41.51910 -39.78994 -37.68082 -36.85069 -35.98422 -34.80578 -34.09000 -31.91029 -31.36432 -29.03681 -28.38817 -27.85451 -25.81153 -25.16275 -23.09252 -22.63714 -22.01842 -21.17651 -19.61360 -18.99293 -18.51433 -18.46861 -18.21753 -17.88179 -17.42778 -17.07094 -16.86635 -16.57426 -16.47402 -15.92696 -15.71255 -15.17016 -15.04741 -14.93119 -14.73185 -14.58184 -14.25074 -14.20003 -14.08244 -13.80496 -13.42813 -13.26644 -13.14685 -13.01600 -12.75786 -12.72655 -12.50619 -12.26195 -12.01183 -11.94989 -11.74579 -11.64478 -11.37969 -11.21095 -10.97815 -10.45277 -10.22932 -9.68221 -9.28409 -8.10960 -6.20458 -0.40449 -0.18270 0.69940 1.28833 1.44709 1.46557 1.48817 1.54167 1.87730 2.25399 2.47030 2.83575 3.22661 3.37624 3.44342 3.50641 3.71269 3.72597 3.86249 4.11415 4.18510 4.21421 4.26323 4.27446 4.31925 4.42753 4.56660 4.65755 4.73843 4.81227 4.91758 4.93502 4.97407 5.01065 5.06758 5.14855 5.29690 5.60181 5.61518 5.89213 6.03052 6.06369 6.27141 6.33637 6.35484 6.52995 6.91797 6.99089 7.47674 8.99799 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016981 B = 0.002267 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.532079 B =12350.673601 C =12883.603925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.350 6.350 3 C 0.527 3.473 4 O -0.516 6.516 5 C -0.144 4.144 6 C -0.039 4.039 7 C -0.128 4.128 8 C 0.134 3.866 9 N -0.656 5.656 10 C 0.494 3.506 11 O -0.551 6.551 12 C 0.090 3.910 13 H 0.118 0.882 14 N -0.818 5.818 15 C -0.084 4.084 16 C 0.038 3.962 17 C -0.542 4.542 18 H 0.057 0.943 19 C 0.002 3.998 20 N -0.930 5.930 21 Si 0.956 3.044 22 H -0.266 1.266 23 H -0.287 1.287 24 H -0.272 1.272 25 C -0.074 4.074 26 C -0.130 4.130 27 C 0.113 3.887 28 F -0.136 7.136 29 H 0.138 0.862 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.108 0.892 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.429 0.571 36 H 0.348 0.652 37 H 0.348 0.652 38 H 0.047 0.953 39 H 0.072 0.928 40 H -0.004 1.004 41 H 0.006 0.994 42 H 0.261 0.739 43 H 0.151 0.849 44 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.939 -1.343 16.134 25.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.266 6.266 3 C 0.371 3.629 4 O -0.405 6.405 5 C -0.146 4.146 6 C -0.042 4.042 7 C -0.184 4.184 8 C 0.039 3.961 9 N -0.303 5.303 10 C 0.281 3.719 11 O -0.428 6.428 12 C -0.026 4.026 13 H 0.136 0.864 14 N -0.347 5.347 15 C -0.123 4.123 16 C 0.001 3.999 17 C -0.580 4.580 18 H 0.075 0.925 19 C -0.196 4.196 20 N -0.570 5.570 21 Si 0.781 3.219 22 H -0.191 1.191 23 H -0.213 1.213 24 H -0.197 1.197 25 C -0.094 4.094 26 C -0.149 4.149 27 C 0.093 3.907 28 F -0.115 7.115 29 H 0.156 0.844 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.126 0.874 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.269 0.731 36 H 0.162 0.838 37 H 0.162 0.838 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.015 0.985 41 H 0.024 0.976 42 H 0.070 0.930 43 H 0.168 0.832 44 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -19.572 -0.806 15.871 25.211 hybrid contribution -0.204 -0.461 0.587 0.774 sum -19.776 -1.268 16.458 25.759 Atomic orbital electron populations 1.23726 0.73745 1.06360 1.03074 1.86671 1.25723 1.31175 1.83043 1.20939 0.88576 0.82057 0.71368 1.90874 1.66893 1.36997 1.45745 1.18778 0.89873 1.12267 0.93727 1.19578 0.91489 0.98409 0.94725 1.21011 0.99859 1.05176 0.92327 1.17523 0.89688 1.01926 0.86991 1.43641 1.25218 1.48716 1.12677 1.22765 0.79773 0.76390 0.92934 1.90652 1.65109 1.47690 1.39340 1.21697 0.95209 0.93891 0.91807 0.86410 1.58969 1.17263 1.03361 1.55128 1.21439 0.97967 0.94043 0.98813 1.18833 0.94635 0.95331 0.91115 1.21722 1.30177 1.05805 1.00276 0.92476 1.25867 0.98002 0.99440 0.96282 1.70089 1.44619 1.35582 1.06706 0.85649 0.79124 0.80074 0.77063 1.19070 1.21262 1.19696 1.21445 1.01919 0.95896 0.90123 1.21164 0.90704 1.02231 1.00773 1.17630 0.90569 1.02998 0.79511 1.91513 1.80711 1.93768 1.45507 0.84433 0.91736 0.91055 0.87390 0.91450 0.88817 0.73070 0.83841 0.83820 0.93451 0.90902 0.98541 0.97592 0.93026 0.83167 0.81138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.56 113.37 1.20 1.47 16 2 O -0.35 -6.64 10.58 -56.45 -0.60 -7.24 16 3 C 0.53 12.20 5.50 70.29 0.39 12.58 16 4 O -0.52 -14.34 16.89 19.87 0.34 -14.00 16 5 C -0.14 -3.21 5.76 -20.08 -0.12 -3.33 16 6 C -0.04 -0.77 5.93 -19.47 -0.12 -0.88 16 7 C -0.13 -1.83 9.08 71.24 0.65 -1.18 16 8 C 0.13 2.80 6.28 38.07 0.24 3.04 16 9 N -0.66 -12.88 4.74 -303.57 -1.44 -14.32 16 10 C 0.49 12.41 6.91 87.66 0.61 13.02 16 11 O -0.55 -16.35 13.66 -3.06 -0.04 -16.40 16 12 C 0.09 2.51 3.15 44.17 0.14 2.65 16 13 H 0.12 2.94 8.14 -2.39 -0.02 2.93 16 14 N -0.82 -24.15 8.44 -171.79 -1.45 -25.60 16 15 C -0.08 -2.97 4.78 30.59 0.15 -2.83 16 16 C 0.04 1.84 4.86 29.85 0.15 1.98 16 17 C -0.54 -29.20 9.11 25.60 0.23 -28.97 16 18 H 0.06 2.94 7.74 -2.91 -0.02 2.92 16 19 C 0.00 0.11 5.46 84.66 0.46 0.57 16 20 N -0.93 -55.06 13.29 21.45 0.28 -54.77 16 21 Si 0.96 43.02 29.54 68.60 2.03 45.05 16 22 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 23 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 25 C -0.07 -1.60 8.68 22.44 0.19 -1.40 16 26 C -0.13 -2.50 10.00 22.26 0.22 -2.28 16 27 C 0.11 2.49 7.29 22.69 0.17 2.66 16 28 F -0.14 -3.16 16.82 44.97 0.76 -2.40 16 29 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.07 1.08 7.08 -2.39 -0.02 1.06 16 34 H 0.09 1.14 7.16 -2.39 -0.02 1.12 16 35 H 0.43 6.26 7.84 -92.71 -0.73 5.53 16 36 H 0.35 8.73 9.06 -89.69 -0.81 7.91 16 37 H 0.35 10.45 8.58 -89.69 -0.77 9.68 16 38 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 41 H 0.01 0.31 7.75 -2.39 -0.02 0.29 16 42 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 43 H 0.15 3.55 6.20 -2.91 -0.02 3.54 16 44 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -71.40 381.55 3.20 -68.20 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: -1.23 Total: 24.40 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: 4.55 Total: -2.91 kcal Atomic # 7 Polarization: -92.09 SS G_CDS: -2.60 Total: -94.69 kcal Atomic # 8 Polarization: -37.34 SS G_CDS: -0.30 Total: -37.64 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.76 Total: -2.40 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -71.40 3.20 -68.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578850331.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.984 kcal (2) G-P(sol) polarization free energy of solvation -71.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds