Wall clock time and date at job start Tue Mar 31 2020 21:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00197 * 2 1 4 4 H 1.08998 * 110.78569 * 26.74485 * 3 2 1 5 5 C 1.54943 * 110.72253 * 263.50110 * 3 2 1 6 6 N 1.48530 * 103.22583 * 204.23023 * 5 3 2 7 7 C 1.47901 * 105.82552 * 39.20200 * 6 5 3 8 8 C 1.53007 * 109.91322 * 94.02342 * 7 6 5 9 9 C 1.50696 * 110.08389 * 215.22670 * 7 6 5 10 10 O 1.21295 * 119.99686 * 143.09330 * 9 7 6 11 11 N 1.34771 * 120.00028 * 323.09012 * 9 7 6 12 12 C 1.40095 * 120.00128 * 174.43735 * 11 9 7 13 13 C 1.38708 * 120.07322 * 335.20183 * 12 11 9 14 14 C 1.38191 * 120.01706 * 179.70100 * 13 12 11 15 15 C 1.38545 * 120.17688 * 0.59136 * 14 13 12 16 16 F 1.35102 * 119.92252 * 179.70448 * 15 14 13 17 17 C 1.38338 * 120.15516 * 359.67774 * 15 14 13 18 18 C 1.38737 * 119.97712 * 0.02775 * 17 15 14 19 19 O 1.35780 * 120.09177 * 180.02562 * 18 17 15 20 20 C 1.34806 * 116.99470 * 5.15945 * 19 18 17 21 21 H 1.08004 * 120.00406 * 354.98318 * 20 19 18 22 22 C 1.38648 * 119.99687 * 174.98780 * 20 19 18 23 23 N 1.31563 * 119.99788 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99836 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46971 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47084 * 119.99696 * 24 22 20 27 27 H 1.48506 * 109.46706 * 239.99662 * 24 22 20 28 28 C 1.53992 * 107.05809 * 334.67312 * 7 6 5 29 29 H 1.08993 * 109.47198 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47271 * 300.00357 * 1 2 3 31 31 H 1.09000 * 109.46685 * 60.00474 * 1 2 3 32 32 H 1.09002 * 110.66418 * 322.65663 * 5 3 2 33 33 H 1.08992 * 110.66830 * 85.62338 * 5 3 2 34 34 H 1.00902 * 110.99937 * 278.68978 * 6 5 3 35 35 H 1.09000 * 109.46871 * 302.41048 * 8 7 6 36 36 H 1.08992 * 109.47156 * 62.41574 * 8 7 6 37 37 H 1.09001 * 109.46454 * 182.41277 * 8 7 6 38 38 H 0.97001 * 120.00151 * 354.43451 * 11 9 7 39 39 H 1.07995 * 119.99119 * 359.96667 * 13 12 11 40 40 H 1.08004 * 119.90749 * 180.27248 * 14 13 12 41 41 H 1.08004 * 120.01538 * 180.02562 * 17 15 14 42 42 H 0.97000 * 120.00240 * 180.02562 * 23 22 20 43 43 H 1.09002 * 110.30759 * 120.13718 * 28 7 6 44 44 H 1.08992 * 110.30864 * 242.30799 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3363 2.0289 0.4586 5 6 2.3831 1.7395 -1.4399 6 7 3.4569 2.7430 -1.2250 7 6 4.2808 2.2203 -0.1134 8 6 5.4646 1.4270 -0.6704 9 6 4.7810 3.3577 0.7392 10 8 4.8632 3.2235 1.9419 11 7 5.1370 4.5241 0.1654 12 6 5.4906 5.6189 0.9648 13 6 5.0119 5.7149 2.2632 14 6 5.3664 6.7922 3.0528 15 6 6.1901 7.7850 2.5473 16 9 6.5286 8.8389 3.3218 17 6 6.6671 7.6993 1.2516 18 6 6.3202 6.6175 0.4553 19 8 6.7875 6.5309 -0.8166 20 6 7.6691 7.4718 -1.2100 21 1 7.9110 8.2938 -0.5526 22 6 8.2651 7.3843 -2.4588 23 7 7.9707 6.3828 -3.2595 24 14 9.4872 8.6877 -3.0038 25 1 9.6444 9.6994 -1.9281 26 1 10.7998 8.0508 -3.2805 27 1 8.9885 9.3495 -4.2361 28 6 3.3768 1.2959 0.7230 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 2.7584 0.8913 -2.0124 33 1 1.5260 2.1905 -1.9398 34 1 3.0680 3.6448 -0.9937 35 1 5.0954 0.6185 -1.3014 36 1 6.0992 2.0878 -1.2607 37 1 6.0423 1.0095 0.1542 38 1 5.1485 4.6055 -0.8011 39 1 4.3655 4.9454 2.6585 40 1 4.9963 6.8629 4.0649 41 1 7.3094 8.4743 0.8600 42 1 8.3879 6.3213 -4.1330 43 1 3.7859 0.2858 0.7453 44 1 3.2716 1.6848 1.7357 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578947351.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:41 Heat of formation + Delta-G solvation = -112.096950 kcal Electronic energy + Delta-G solvation = -29791.860515 eV Core-core repulsion = 25432.055447 eV Total energy + Delta-G solvation = -4359.805068 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -48.28097 -40.85302 -39.40482 -38.39161 -36.81326 -36.19176 -34.21195 -32.42947 -31.23945 -29.89441 -29.43606 -28.27869 -26.65096 -26.08070 -25.53398 -23.27961 -22.12627 -21.53265 -21.06064 -19.27631 -18.38693 -18.18938 -17.56939 -16.94863 -16.67820 -15.71499 -15.60335 -15.27566 -15.24300 -14.99005 -14.76704 -14.67580 -14.32288 -14.20719 -13.74160 -13.61388 -13.57038 -13.38544 -12.99963 -12.74324 -12.42723 -12.32290 -12.22965 -11.98360 -11.90179 -11.69794 -11.59718 -11.48850 -11.40239 -11.02821 -10.75380 -10.72648 -10.52328 -10.07200 -9.85066 -9.82901 -9.36998 -8.98478 -8.76522 -7.92797 -7.12139 -6.61214 -4.19307 1.71861 2.07196 2.78803 3.05085 3.07602 3.12875 3.23362 3.46118 3.83372 3.95141 4.30104 4.40185 4.58000 4.66528 4.80777 4.90731 4.95310 4.98502 5.05596 5.08638 5.12723 5.20917 5.37022 5.42875 5.54367 5.68008 5.70284 5.72903 5.78743 5.87520 5.92964 5.97298 6.17121 6.27851 6.39383 6.50635 6.68891 6.87458 6.89447 6.92288 6.97944 7.03557 7.16637 7.59210 7.80216 7.85295 8.39652 8.83929 9.43452 10.55278 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011467 B = 0.003459 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.164611 B = 8092.040211 C =10006.028790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.376 6.376 3 C 0.051 3.949 4 H 0.070 0.930 5 C 0.027 3.973 6 N -0.653 5.653 7 C 0.090 3.910 8 C -0.128 4.128 9 C 0.509 3.491 10 O -0.531 6.531 11 N -0.638 5.638 12 C 0.059 3.941 13 C -0.061 4.061 14 C -0.228 4.228 15 C 0.129 3.871 16 F -0.151 7.151 17 C -0.258 4.258 18 C 0.157 3.843 19 O -0.167 6.167 20 C -0.394 4.394 21 H 0.095 0.905 22 C 0.044 3.956 23 N -0.854 5.854 24 Si 0.942 3.058 25 H -0.266 1.266 26 H -0.275 1.275 27 H -0.275 1.275 28 C -0.134 4.134 29 H 0.086 0.914 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.344 0.656 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.423 0.577 39 H 0.145 0.855 40 H 0.122 0.878 41 H 0.144 0.856 42 H 0.272 0.728 43 H 0.092 0.908 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.624 -8.501 3.364 14.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.294 6.294 3 C -0.009 4.009 4 H 0.088 0.912 5 C -0.103 4.103 6 N -0.285 5.285 7 C -0.004 4.004 8 C -0.186 4.186 9 C 0.295 3.705 10 O -0.408 6.408 11 N -0.282 5.282 12 C -0.035 4.035 13 C -0.081 4.081 14 C -0.248 4.248 15 C 0.109 3.891 16 F -0.130 7.130 17 C -0.279 4.279 18 C 0.101 3.899 19 O -0.070 6.070 20 C -0.469 4.469 21 H 0.112 0.888 22 C -0.162 4.162 23 N -0.488 5.488 24 Si 0.766 3.234 25 H -0.190 1.190 26 H -0.200 1.200 27 H -0.200 1.200 28 C -0.173 4.173 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.161 0.839 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.261 0.739 39 H 0.163 0.837 40 H 0.140 0.860 41 H 0.161 0.839 42 H 0.082 0.918 43 H 0.110 0.890 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.985 -9.186 3.207 14.674 hybrid contribution -0.022 1.374 0.159 1.383 sum -11.007 -7.812 3.366 13.911 Atomic orbital electron populations 1.22806 0.81074 1.02792 1.00014 1.87920 1.19616 1.26894 1.94931 1.23866 0.94981 0.85155 0.96852 0.91244 1.23602 0.93938 0.96636 0.96159 1.62804 1.20865 1.05283 1.39503 1.21804 0.96051 0.93013 0.89525 1.21748 0.95614 0.99938 1.01253 1.20569 0.78403 0.82955 0.88551 1.90632 1.54029 1.81427 1.14678 1.43245 1.64274 1.09377 1.11256 1.16948 1.04137 0.89441 0.93019 1.20732 0.98471 0.97304 0.91623 1.20475 1.06437 0.96638 1.01276 1.17465 0.97832 0.84923 0.88889 1.91413 1.91130 1.55632 1.74836 1.20851 1.10354 1.02738 0.93933 1.18707 0.92502 0.92404 0.86292 1.83906 1.53072 1.49344 1.20642 1.21390 1.20058 1.03878 1.01594 0.88755 1.25290 0.97819 0.98054 0.94992 1.70020 1.40811 1.28976 1.08959 0.85625 0.79286 0.79376 0.79081 1.18978 1.20004 1.19998 1.22836 0.93014 1.01461 1.00035 0.89569 0.94037 0.93953 0.88763 0.90222 0.83879 0.91138 0.90773 0.91675 0.73888 0.83724 0.85964 0.83899 0.91789 0.88969 0.88826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.85 101.05 1.10 1.32 16 2 O -0.38 -3.99 10.44 -35.23 -0.37 -4.36 16 3 C 0.05 0.53 3.55 -24.86 -0.09 0.44 16 4 H 0.07 0.67 7.83 -51.93 -0.41 0.26 16 5 C 0.03 0.27 7.26 -1.90 -0.01 0.26 16 6 N -0.65 -7.90 6.56 -97.63 -0.64 -8.54 16 7 C 0.09 1.19 1.05 -131.68 -0.14 1.06 16 8 C -0.13 -1.67 8.59 37.16 0.32 -1.35 16 9 C 0.51 8.39 6.26 -10.99 -0.07 8.33 16 10 O -0.53 -9.86 12.76 5.54 0.07 -9.79 16 11 N -0.64 -11.51 4.89 -9.72 -0.05 -11.55 16 12 C 0.06 1.20 6.45 -83.45 -0.54 0.66 16 13 C -0.06 -1.15 8.72 -39.42 -0.34 -1.49 16 14 C -0.23 -4.18 10.02 -39.49 -0.40 -4.58 16 15 C 0.13 2.55 7.29 -39.43 -0.29 2.26 16 16 F -0.15 -2.88 17.26 2.25 0.04 -2.84 16 17 C -0.26 -5.57 9.14 -39.36 -0.36 -5.93 16 18 C 0.16 3.57 6.66 -38.94 -0.26 3.31 16 19 O -0.17 -4.30 9.17 0.02 0.00 -4.30 16 20 C -0.39 -10.26 9.49 30.88 0.29 -9.97 16 21 H 0.10 2.32 5.20 -52.48 -0.27 2.05 16 22 C 0.04 1.13 5.49 -17.52 -0.10 1.04 16 23 N -0.85 -23.12 13.67 55.48 0.76 -22.36 16 24 Si 0.94 19.57 29.55 -169.99 -5.02 14.54 16 25 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 26 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 27 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 28 C -0.13 -1.62 5.83 -25.37 -0.15 -1.77 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.04 0.28 8.12 -51.93 -0.42 -0.14 16 31 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.34 4.08 8.00 -39.29 -0.31 3.77 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.42 7.70 7.80 -40.82 -0.32 7.38 16 39 H 0.15 2.62 5.79 -52.49 -0.30 2.31 16 40 H 0.12 1.94 8.06 -52.48 -0.42 1.51 16 41 H 0.14 3.09 5.63 -52.48 -0.30 2.79 16 42 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 43 H 0.09 1.09 7.62 -51.93 -0.40 0.70 16 44 H 0.09 1.24 6.76 -51.93 -0.35 0.89 16 LS Contribution 368.38 15.07 5.55 5.55 Total: -1.00 -28.94 368.38 -6.29 -35.23 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: -5.60 Total: 14.83 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -1.03 Total: -6.42 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: 0.07 Total: -42.46 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.30 Total: -18.44 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.04 Total: -2.84 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.94 -6.29 -35.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578947351.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.869 kcal (2) G-P(sol) polarization free energy of solvation -28.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds