Wall clock time and date at job start Tue Mar 31 2020 21:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00197 * 2 1 4 4 H 1.08998 * 110.78569 * 26.74485 * 3 2 1 5 5 C 1.54943 * 110.72253 * 263.50110 * 3 2 1 6 6 N 1.48530 * 103.22583 * 204.23023 * 5 3 2 7 7 C 1.47901 * 105.82552 * 39.20200 * 6 5 3 8 8 C 1.53007 * 109.91322 * 94.02342 * 7 6 5 9 9 C 1.50696 * 110.08389 * 215.22670 * 7 6 5 10 10 O 1.21295 * 119.99686 * 143.09330 * 9 7 6 11 11 N 1.34771 * 120.00028 * 323.09012 * 9 7 6 12 12 C 1.40095 * 120.00128 * 174.43735 * 11 9 7 13 13 C 1.38708 * 120.07322 * 335.20183 * 12 11 9 14 14 C 1.38191 * 120.01706 * 179.70100 * 13 12 11 15 15 C 1.38545 * 120.17688 * 0.59136 * 14 13 12 16 16 F 1.35102 * 119.92252 * 179.70448 * 15 14 13 17 17 C 1.38338 * 120.15516 * 359.67774 * 15 14 13 18 18 C 1.38737 * 119.97712 * 0.02775 * 17 15 14 19 19 O 1.35780 * 120.09177 * 180.02562 * 18 17 15 20 20 C 1.34806 * 116.99470 * 5.15945 * 19 18 17 21 21 H 1.08004 * 120.00406 * 354.98318 * 20 19 18 22 22 C 1.38648 * 119.99687 * 174.98780 * 20 19 18 23 23 N 1.31563 * 119.99788 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99836 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46971 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47084 * 119.99696 * 24 22 20 27 27 H 1.48506 * 109.46706 * 239.99662 * 24 22 20 28 28 C 1.53992 * 107.05809 * 334.67312 * 7 6 5 29 29 H 1.08993 * 109.47198 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47271 * 300.00357 * 1 2 3 31 31 H 1.09000 * 109.46685 * 60.00474 * 1 2 3 32 32 H 1.09002 * 110.66418 * 322.65663 * 5 3 2 33 33 H 1.08992 * 110.66830 * 85.62338 * 5 3 2 34 34 H 1.00902 * 110.99937 * 278.68978 * 6 5 3 35 35 H 1.09000 * 109.46871 * 302.41048 * 8 7 6 36 36 H 1.08992 * 109.47156 * 62.41574 * 8 7 6 37 37 H 1.09001 * 109.46454 * 182.41277 * 8 7 6 38 38 H 0.97001 * 120.00151 * 354.43451 * 11 9 7 39 39 H 1.07995 * 119.99119 * 359.96667 * 13 12 11 40 40 H 1.08004 * 119.90749 * 180.27248 * 14 13 12 41 41 H 1.08004 * 120.01538 * 180.02562 * 17 15 14 42 42 H 0.97000 * 120.00240 * 180.02562 * 23 22 20 43 43 H 1.09002 * 110.30759 * 120.13718 * 28 7 6 44 44 H 1.08992 * 110.30864 * 242.30799 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3363 2.0289 0.4586 5 6 2.3831 1.7395 -1.4399 6 7 3.4569 2.7430 -1.2250 7 6 4.2808 2.2203 -0.1134 8 6 5.4646 1.4270 -0.6704 9 6 4.7810 3.3577 0.7392 10 8 4.8632 3.2235 1.9419 11 7 5.1370 4.5241 0.1654 12 6 5.4906 5.6189 0.9648 13 6 5.0119 5.7149 2.2632 14 6 5.3664 6.7922 3.0528 15 6 6.1901 7.7850 2.5473 16 9 6.5286 8.8389 3.3218 17 6 6.6671 7.6993 1.2516 18 6 6.3202 6.6175 0.4553 19 8 6.7875 6.5309 -0.8166 20 6 7.6691 7.4718 -1.2100 21 1 7.9110 8.2938 -0.5526 22 6 8.2651 7.3843 -2.4588 23 7 7.9707 6.3828 -3.2595 24 14 9.4872 8.6877 -3.0038 25 1 9.6444 9.6994 -1.9281 26 1 10.7998 8.0508 -3.2805 27 1 8.9885 9.3495 -4.2361 28 6 3.3768 1.2959 0.7230 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 2.7584 0.8913 -2.0124 33 1 1.5260 2.1905 -1.9398 34 1 3.0680 3.6448 -0.9937 35 1 5.0954 0.6185 -1.3014 36 1 6.0992 2.0878 -1.2607 37 1 6.0423 1.0095 0.1542 38 1 5.1485 4.6055 -0.8011 39 1 4.3655 4.9454 2.6585 40 1 4.9963 6.8629 4.0649 41 1 7.3094 8.4743 0.8600 42 1 8.3879 6.3213 -4.1330 43 1 3.7859 0.2858 0.7453 44 1 3.2716 1.6848 1.7357 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578947351.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:40 Heat of formation + Delta-G solvation = -132.027100 kcal Electronic energy + Delta-G solvation = -29792.724751 eV Core-core repulsion = 25432.055447 eV Total energy + Delta-G solvation = -4360.669304 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.84684 -42.15952 -40.83204 -39.63267 -38.12205 -37.47403 -35.69846 -34.31056 -32.28364 -31.13868 -30.81160 -29.76702 -27.45999 -27.37187 -26.95314 -24.67976 -23.72704 -22.73306 -22.18919 -20.55240 -20.16833 -19.59516 -18.96334 -18.26069 -17.72686 -17.15396 -16.98037 -16.69193 -16.44895 -16.27152 -16.06604 -15.91377 -15.82695 -15.47129 -15.31535 -15.22116 -14.86448 -14.58029 -14.04815 -13.98731 -13.90029 -13.62438 -13.44442 -13.33922 -13.08628 -13.04957 -12.79259 -12.63988 -12.49236 -12.33001 -12.24083 -12.12102 -11.66529 -11.62320 -11.34156 -10.89076 -10.83738 -10.74646 -9.71226 -9.58774 -8.76105 -8.50179 -6.16458 0.11720 0.43008 1.37619 1.39466 1.43524 1.53618 1.92690 2.14200 2.59627 2.65723 3.00963 3.03645 3.17716 3.36537 3.43319 3.57332 3.68677 3.91888 4.04723 4.12080 4.16719 4.17118 4.32559 4.45947 4.54658 4.57783 4.61946 4.69136 4.75216 4.85778 4.87864 4.88631 4.92879 4.98393 5.00789 5.19390 5.20426 5.27110 5.32482 5.40836 5.52085 5.92905 5.99328 6.07966 6.21233 6.39437 6.93440 6.97088 7.61097 8.70033 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011467 B = 0.003459 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.164611 B = 8092.040211 C =10006.028790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.393 6.393 3 C 0.059 3.941 4 H 0.079 0.921 5 C 0.030 3.970 6 N -0.661 5.661 7 C 0.098 3.902 8 C -0.126 4.126 9 C 0.512 3.488 10 O -0.549 6.549 11 N -0.640 5.640 12 C 0.060 3.940 13 C -0.061 4.061 14 C -0.202 4.202 15 C 0.122 3.878 16 F -0.145 7.145 17 C -0.264 4.264 18 C 0.131 3.869 19 O -0.201 6.201 20 C -0.416 4.416 21 H 0.099 0.901 22 C -0.007 4.007 23 N -0.901 5.901 24 Si 1.011 2.989 25 H -0.257 1.257 26 H -0.270 1.270 27 H -0.267 1.267 28 C -0.131 4.131 29 H 0.099 0.901 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.345 0.655 35 H 0.088 0.912 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.421 0.579 39 H 0.159 0.841 40 H 0.158 0.842 41 H 0.136 0.864 42 H 0.275 0.725 43 H 0.094 0.906 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.904 -8.752 4.351 16.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.311 6.311 3 C -0.001 4.001 4 H 0.097 0.903 5 C -0.099 4.099 6 N -0.292 5.292 7 C 0.004 3.996 8 C -0.184 4.184 9 C 0.300 3.700 10 O -0.427 6.427 11 N -0.284 5.284 12 C -0.035 4.035 13 C -0.081 4.081 14 C -0.222 4.222 15 C 0.102 3.898 16 F -0.123 7.123 17 C -0.284 4.284 18 C 0.077 3.923 19 O -0.106 6.106 20 C -0.492 4.492 21 H 0.116 0.884 22 C -0.208 4.208 23 N -0.537 5.537 24 Si 0.831 3.169 25 H -0.181 1.181 26 H -0.195 1.195 27 H -0.192 1.192 28 C -0.170 4.170 29 H 0.117 0.883 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.118 0.882 34 H 0.162 0.838 35 H 0.107 0.893 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.259 0.741 39 H 0.176 0.824 40 H 0.176 0.824 41 H 0.154 0.846 42 H 0.084 0.916 43 H 0.112 0.888 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.299 -9.447 4.235 16.076 hybrid contribution 0.216 1.367 0.087 1.387 sum -12.083 -8.080 4.323 15.165 Atomic orbital electron populations 1.23012 0.79393 1.04029 1.00880 1.87892 1.21471 1.26761 1.95011 1.23744 0.94197 0.85576 0.96554 0.90304 1.23650 0.93907 0.96143 0.96230 1.62819 1.21780 1.05882 1.38766 1.21745 0.96488 0.91726 0.89620 1.21743 0.95355 1.00000 1.01271 1.21159 0.77260 0.82933 0.88640 1.90606 1.54704 1.81729 1.15685 1.43342 1.64486 1.09513 1.11033 1.17236 1.03029 0.89476 0.93710 1.20957 0.98468 0.97796 0.90918 1.20882 1.03967 0.94914 1.02455 1.17467 0.98329 0.85661 0.88353 1.91430 1.91117 1.55374 1.74413 1.20929 1.10307 1.02370 0.94832 1.19072 0.93434 0.93689 0.86086 1.83890 1.54454 1.50102 1.22184 1.21762 1.20764 1.04421 1.02251 0.88356 1.26366 0.99429 1.00205 0.94753 1.70129 1.42748 1.31213 1.09592 0.84630 0.76715 0.76743 0.78833 1.18072 1.19524 1.19164 1.22773 0.93981 1.00964 0.99309 0.88261 0.93453 0.92785 0.88901 0.88189 0.83759 0.89311 0.92802 0.91608 0.74124 0.82397 0.82434 0.84632 0.91592 0.88755 0.89960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.85 113.37 1.23 1.51 16 2 O -0.39 -7.51 10.44 -148.98 -1.56 -9.06 16 3 C 0.06 1.11 3.55 31.80 0.11 1.22 16 4 H 0.08 1.34 7.83 -2.39 -0.02 1.32 16 5 C 0.03 0.55 7.26 86.65 0.63 1.18 16 6 N -0.66 -15.42 6.56 -462.78 -3.03 -18.46 16 7 C 0.10 2.55 1.05 2.92 0.00 2.55 16 8 C -0.13 -3.26 8.59 71.98 0.62 -2.64 16 9 C 0.51 16.75 6.26 87.66 0.55 17.30 16 10 O -0.55 -19.95 12.76 -3.07 -0.04 -19.99 16 11 N -0.64 -23.41 4.89 -303.04 -1.48 -24.89 16 12 C 0.06 2.46 6.45 38.23 0.25 2.71 16 13 C -0.06 -2.20 8.72 22.37 0.19 -2.01 16 14 C -0.20 -6.89 10.02 22.33 0.22 -6.66 16 15 C 0.12 4.65 7.29 22.37 0.16 4.81 16 16 F -0.14 -5.22 17.26 44.97 0.78 -4.45 16 17 C -0.26 -11.48 9.14 22.41 0.20 -11.27 16 18 C 0.13 6.09 6.66 22.69 0.15 6.24 16 19 O -0.20 -10.81 9.17 -22.83 -0.21 -11.02 16 20 C -0.42 -22.50 9.49 67.92 0.64 -21.86 16 21 H 0.10 5.01 5.20 -2.91 -0.02 5.00 16 22 C -0.01 -0.39 5.49 84.83 0.47 0.08 16 23 N -0.90 -50.55 13.67 21.61 0.30 -50.25 16 24 Si 1.01 40.70 29.55 68.60 2.03 42.73 16 25 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 26 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 27 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 28 C -0.13 -3.00 5.83 31.47 0.18 -2.82 16 29 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 0.53 8.12 -2.39 -0.02 0.51 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16 34 H 0.34 7.95 8.00 -89.69 -0.72 7.23 16 35 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.42 15.90 7.80 -92.71 -0.72 15.17 16 39 H 0.16 5.37 5.79 -2.91 -0.02 5.35 16 40 H 0.16 4.29 8.06 -2.91 -0.02 4.27 16 41 H 0.14 6.01 5.63 -2.91 -0.02 6.00 16 42 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 43 H 0.09 2.12 7.62 -2.39 -0.02 2.10 16 44 H 0.08 2.09 6.76 -2.39 -0.02 2.08 16 Total: -1.00 -63.39 368.38 2.03 -61.36 By element: Atomic # 1 Polarization: 44.07 SS G_CDS: -0.37 Total: 43.70 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: 5.62 Total: -9.66 kcal Atomic # 7 Polarization: -89.38 SS G_CDS: -4.22 Total: -93.60 kcal Atomic # 8 Polarization: -38.27 SS G_CDS: -1.80 Total: -40.08 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.78 Total: -4.45 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Total: -63.39 2.03 -61.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578947351.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.671 kcal (2) G-P(sol) polarization free energy of solvation -63.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds