Wall clock time and date at job start Tue Mar 31 2020 22:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 112.99962 * 2 1 4 4 N 1.46505 * 109.47318 * 48.16894 * 3 2 1 5 5 C 1.34829 * 126.59176 * 124.99809 * 4 3 2 6 6 C 1.36673 * 106.82809 * 180.02562 * 5 4 3 7 7 C 1.47436 * 125.77754 * 180.02562 * 6 5 4 8 8 O 1.21617 * 120.00374 * 5.09149 * 7 6 5 9 9 N 1.34782 * 119.99738 * 184.81759 * 7 6 5 10 10 C 1.36957 * 119.99516 * 355.32622 * 9 7 6 11 11 H 1.07998 * 120.00730 * 312.83421 * 10 9 7 12 12 C 1.38997 * 119.99789 * 132.84479 * 10 9 7 13 13 N 1.31397 * 119.99875 * 4.07996 * 12 10 9 14 14 Si 1.86800 * 120.00099 * 184.08894 * 12 10 9 15 15 H 1.48497 * 109.47211 * 89.99231 * 14 12 10 16 16 H 1.48497 * 109.47096 * 209.99829 * 14 12 10 17 17 H 1.48501 * 109.46716 * 329.99593 * 14 12 10 18 18 C 1.46492 * 120.00097 * 175.32512 * 9 7 6 19 19 C 1.53005 * 109.47009 * 94.60812 * 18 9 7 20 20 C 1.50696 * 109.46979 * 179.97438 * 19 18 9 21 21 O 1.20824 * 120.00484 * 0.02562 * 20 19 18 22 22 O 1.34227 * 119.99988 * 179.97438 * 20 19 18 23 23 N 1.34424 * 108.44104 * 0.26777 * 6 5 4 24 24 N 1.28764 * 109.52560 * 359.54813 * 23 6 5 25 25 C 1.54039 * 113.92463 * 131.92712 * 2 1 3 26 26 O 1.44174 * 85.51511 * 91.66009 * 25 2 1 27 27 C 1.44176 * 93.33987 * 24.19493 * 26 25 2 28 28 H 1.09004 * 109.46650 * 60.00404 * 1 2 3 29 29 H 1.08994 * 109.46751 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47141 * 300.00490 * 1 2 3 31 31 H 1.09000 * 109.46859 * 288.17231 * 3 2 1 32 32 H 1.09000 * 109.47281 * 168.17200 * 3 2 1 33 33 H 1.08003 * 126.58711 * 0.02601 * 5 4 3 34 34 H 0.97000 * 120.00366 * 180.02562 * 13 12 10 35 35 H 1.09003 * 109.47303 * 214.60542 * 18 9 7 36 36 H 1.09004 * 109.47461 * 334.60962 * 18 9 7 37 37 H 1.09003 * 109.46868 * 299.99997 * 19 18 9 38 38 H 1.09004 * 109.46886 * 59.99798 * 19 18 9 39 39 H 0.96703 * 117.00342 * 180.02562 * 22 20 19 40 40 H 1.09001 * 113.86272 * 205.80764 * 25 2 1 41 41 H 1.09003 * 113.86363 * 337.51762 * 25 2 1 42 42 H 1.09005 * 113.86477 * 221.65653 * 27 26 25 43 43 H 1.08998 * 113.98595 * 89.96453 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1279 1.4084 0.0000 4 7 1.4707 2.2179 1.0292 5 6 2.0742 2.8887 2.0310 6 6 1.0857 3.5022 2.7483 7 6 1.2833 4.3488 3.9390 8 8 2.4085 4.6273 4.3073 9 7 0.2170 4.8189 4.6161 10 6 -1.0485 4.5906 4.1446 11 1 -1.2770 4.7666 3.1039 12 6 -2.0388 4.1325 5.0057 13 7 -1.7830 3.9949 6.2872 14 14 -3.7332 3.7121 4.3410 15 1 -3.7672 2.2826 3.9406 16 1 -4.7521 3.9559 5.3934 17 1 -4.0271 4.5639 3.1606 18 6 0.4115 5.5739 5.8563 19 6 0.4247 7.0718 5.5448 20 6 0.6242 7.8485 6.8207 21 8 0.7440 7.2640 7.8713 22 8 0.6698 9.1896 6.7898 23 7 -0.0976 3.1985 2.1874 24 7 0.0933 2.4433 1.1621 25 6 2.1547 -0.9408 1.0476 26 8 2.1471 -1.9296 -0.0017 27 6 2.1521 -0.9398 -1.0499 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.9748 1.8680 -0.9764 32 1 3.1957 1.3498 0.2106 33 1 3.1351 2.9329 2.2287 34 1 -2.4740 3.6749 6.8881 35 1 -0.4024 5.3537 6.5472 36 1 1.3606 5.2888 6.3103 37 1 1.2386 7.2920 4.8539 38 1 -0.5244 7.3569 5.0908 39 1 0.7999 9.6440 7.6334 40 1 3.1539 -0.6441 1.3667 41 1 1.4916 -1.1762 1.8801 42 1 1.4870 -1.1742 -1.8811 43 1 3.1495 -0.6415 -1.3729 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594044266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:08 Heat of formation + Delta-G solvation = -19.755596 kcal Electronic energy + Delta-G solvation = -29759.901498 eV Core-core repulsion = 25424.020613 eV Total energy + Delta-G solvation = -4335.880885 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.72000 -40.76819 -39.74279 -38.28340 -35.73902 -34.98596 -34.88881 -31.89276 -31.85728 -30.81087 -29.64156 -27.58369 -26.89410 -25.79413 -25.14198 -24.24589 -22.10166 -21.62805 -20.39285 -19.55064 -19.03258 -17.93662 -17.60411 -16.70617 -16.46976 -16.18734 -15.95255 -15.74520 -15.67817 -15.32769 -15.02400 -14.46840 -14.35546 -13.94957 -13.83043 -13.50158 -13.27406 -12.91777 -12.62011 -12.57916 -12.34958 -12.28613 -11.94372 -11.73682 -11.56432 -11.14498 -11.10218 -11.03855 -10.99317 -10.89080 -10.76121 -10.27636 -10.18277 -10.03918 -10.02158 -9.91951 -9.66092 -9.10396 -8.70252 -8.55696 -7.48898 -6.23642 -4.11412 1.66864 2.38934 2.61826 2.74674 3.24901 3.31301 3.34180 3.36434 3.51400 3.81234 4.12129 4.18974 4.38385 4.51113 4.63223 4.72414 4.88502 4.93938 4.97676 5.04860 5.11047 5.28618 5.52141 5.59227 5.62188 5.67430 5.73509 5.81859 5.83810 5.87558 5.91934 5.94364 6.13514 6.33346 6.43130 6.61449 6.82529 6.88563 6.97348 7.42058 7.74602 7.93540 8.37808 8.49796 8.69336 9.13709 9.40988 9.83957 10.71705 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014514 B = 0.003258 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.742268 B = 8592.189687 C = 9854.402236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.140 4.140 3 C 0.133 3.867 4 N -0.372 5.372 5 C 0.060 3.940 6 C -0.051 4.051 7 C 0.545 3.455 8 O -0.604 6.604 9 N -0.419 5.419 10 C -0.316 4.316 11 H 0.105 0.895 12 C 0.048 3.952 13 N -0.870 5.870 14 Si 0.922 3.078 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.267 1.267 18 C 0.111 3.889 19 C -0.121 4.121 20 C 0.483 3.517 21 O -0.514 6.514 22 O -0.526 6.526 23 N -0.165 5.165 24 N -0.094 5.094 25 C 0.042 3.958 26 O -0.376 6.376 27 C 0.049 3.951 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.193 0.807 34 H 0.270 0.730 35 H 0.137 0.863 36 H 0.063 0.937 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.400 0.600 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.416 -2.752 -11.408 13.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.141 4.141 3 C 0.011 3.989 4 N -0.158 5.158 5 C -0.096 4.096 6 C -0.190 4.190 7 C 0.332 3.668 8 O -0.490 6.490 9 N -0.135 5.135 10 C -0.445 4.445 11 H 0.123 0.877 12 C -0.157 4.157 13 N -0.507 5.507 14 Si 0.749 3.251 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.192 1.192 18 C -0.012 4.012 19 C -0.160 4.160 20 C 0.326 3.674 21 O -0.401 6.401 22 O -0.337 6.337 23 N -0.037 5.037 24 N -0.074 5.074 25 C -0.034 4.034 26 O -0.294 6.294 27 C -0.029 4.029 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.210 0.790 34 H 0.081 0.919 35 H 0.155 0.845 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.124 0.876 39 H 0.258 0.742 40 H 0.101 0.899 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.432 -3.625 -11.713 13.411 hybrid contribution 0.326 0.359 0.579 0.755 sum 5.758 -3.266 -11.135 12.954 Atomic orbital electron populations 1.21792 0.90107 1.02267 1.04979 1.24073 0.99694 0.93385 0.96994 1.21958 0.96447 0.89697 0.90786 1.50310 1.08064 1.35706 1.21767 1.23200 1.00584 0.95945 0.89844 1.21567 0.87955 1.07496 1.01949 1.17225 0.84903 0.81360 0.83295 1.90643 1.23821 1.63676 1.70847 1.43258 1.05336 1.43846 1.21025 1.19730 0.84661 1.43527 0.96568 0.87744 1.25577 1.00481 0.94697 0.94956 1.69561 1.34767 1.43557 1.02862 0.85994 0.81113 0.79522 0.78464 1.20109 1.21307 1.19176 1.21663 1.05186 0.85126 0.89221 1.21814 1.04832 0.97159 0.92186 1.23804 0.71466 0.79936 0.92213 1.90696 1.45681 1.70268 1.33501 1.84595 1.85234 1.22412 1.41497 1.75211 1.22576 1.05113 1.00804 1.81932 0.90621 1.18170 1.16642 1.24153 1.00448 0.86313 0.92516 1.89704 1.95690 1.27242 1.16770 1.24020 1.00317 0.86186 0.92360 0.91569 0.92159 0.89086 0.88541 0.88059 0.79016 0.91871 0.84546 0.91834 0.88874 0.87604 0.74241 0.89894 0.88734 0.88612 0.89902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 8.22 37.16 0.31 -1.23 16 2 C -0.14 -1.32 1.23 -153.43 -0.19 -1.51 16 3 C 0.13 1.19 6.10 -4.04 -0.02 1.16 16 4 N -0.37 -5.23 3.65 -61.03 -0.22 -5.45 16 5 C 0.06 0.95 11.28 -16.80 -0.19 0.77 16 6 C -0.05 -1.06 6.74 -83.55 -0.56 -1.62 16 7 C 0.54 13.06 7.62 -12.51 -0.10 12.97 16 8 O -0.60 -15.08 16.43 5.26 0.09 -14.99 16 9 N -0.42 -10.38 2.52 -116.02 -0.29 -10.67 16 10 C -0.32 -7.93 7.50 -14.98 -0.11 -8.04 16 11 H 0.11 2.63 6.45 -52.49 -0.34 2.29 16 12 C 0.05 1.22 5.41 -17.46 -0.09 1.13 16 13 N -0.87 -23.07 10.80 55.50 0.60 -22.47 16 14 Si 0.92 20.39 29.56 -169.99 -5.02 15.37 16 15 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 18 C 0.11 2.66 4.37 -4.04 -0.02 2.64 16 19 C -0.12 -2.40 6.11 -27.88 -0.17 -2.57 16 20 C 0.48 8.95 8.33 36.00 0.30 9.25 16 21 O -0.51 -11.03 16.74 -18.75 -0.31 -11.35 16 22 O -0.53 -7.59 13.42 -39.25 -0.53 -8.12 16 23 N -0.16 -3.52 9.27 32.84 0.30 -3.21 16 24 N -0.09 -1.69 10.44 60.35 0.63 -1.06 16 25 C 0.04 0.43 8.36 37.61 0.31 0.75 16 26 O -0.38 -4.21 12.37 -35.23 -0.44 -4.65 16 27 C 0.05 0.37 8.36 37.60 0.31 0.69 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 30 H 0.09 1.34 5.59 -51.93 -0.29 1.05 16 31 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.10 0.62 7.87 -51.93 -0.41 0.21 16 33 H 0.19 2.45 8.06 -52.48 -0.42 2.03 16 34 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.14 3.58 5.19 -51.93 -0.27 3.31 16 36 H 0.06 1.60 7.31 -51.93 -0.38 1.22 16 37 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 38 H 0.11 2.04 8.14 -51.93 -0.42 1.61 16 39 H 0.40 3.83 9.10 45.56 0.41 4.24 16 40 H 0.08 0.71 7.96 -51.93 -0.41 0.29 16 41 H 0.09 1.08 8.10 -51.93 -0.42 0.66 16 42 H 0.10 0.64 8.10 -51.93 -0.42 0.22 16 43 H 0.08 0.45 8.10 -51.93 -0.42 0.02 16 LS Contribution 366.94 15.07 5.53 5.53 Total: -1.00 -33.40 366.94 -4.50 -37.90 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -4.62 Total: 8.78 kcal Atomic # 6 Polarization: 14.60 SS G_CDS: -0.22 Total: 14.37 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 1.02 Total: -42.86 kcal Atomic # 8 Polarization: -37.91 SS G_CDS: -1.19 Total: -39.10 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.40 -4.50 -37.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594044266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.147 kcal (2) G-P(sol) polarization free energy of solvation -33.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds