Wall clock time and date at job start Tue Mar 31 2020 21:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39697 * 125.76650 * 2 1 4 4 C 1.36217 * 107.85426 * 179.73988 * 3 2 1 5 5 N 1.39197 * 126.26926 * 180.24236 * 4 3 2 6 6 C 1.34773 * 120.00383 * 0.17585 * 5 4 3 7 7 O 1.21394 * 119.99830 * 359.97438 * 6 5 4 8 8 C 1.49304 * 120.00113 * 180.02562 * 6 5 4 9 9 O 1.21358 * 119.99943 * 0.02562 * 8 6 5 10 10 N 1.34778 * 119.99903 * 179.97438 * 8 6 5 11 11 C 1.46501 * 120.00145 * 180.02562 * 10 8 6 12 12 H 1.09000 * 109.46973 * 34.99688 * 11 10 8 13 13 C 1.53008 * 109.46770 * 275.00362 * 11 10 8 14 14 C 1.52997 * 109.47098 * 155.00322 * 11 10 8 15 15 C 1.50699 * 109.47249 * 294.99785 * 14 11 10 16 16 O 1.20827 * 119.99779 * 0.02562 * 15 14 11 17 17 O 1.34225 * 120.00103 * 180.02562 * 15 14 11 18 18 N 1.35860 * 107.45724 * 0.38932 * 4 3 2 19 19 C 1.46491 * 126.09683 * 179.87697 * 18 4 3 20 20 C 1.50702 * 109.46957 * 269.71194 * 19 18 4 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72213 * 20 19 18 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 19 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 19 25 25 H 1.48501 * 109.47188 * 90.00793 * 24 22 20 26 26 H 1.48501 * 109.47085 * 210.00372 * 24 22 20 27 27 H 1.48498 * 109.47634 * 330.00608 * 24 22 20 28 28 N 1.30845 * 125.77207 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.46827 * 269.99402 * 1 2 3 30 30 H 1.08996 * 109.47014 * 29.99063 * 1 2 3 31 31 H 1.08999 * 109.47158 * 149.99822 * 1 2 3 32 32 H 1.08001 * 126.07300 * 359.97438 * 3 2 1 33 33 H 0.97001 * 119.99452 * 180.17249 * 5 4 3 34 34 H 0.96997 * 119.99719 * 0.02562 * 10 8 6 35 35 H 1.09000 * 109.46822 * 299.99419 * 13 11 10 36 36 H 1.08996 * 109.47179 * 59.99967 * 13 11 10 37 37 H 1.08997 * 109.46480 * 179.97438 * 13 11 10 38 38 H 1.08993 * 109.47391 * 55.00304 * 14 11 10 39 39 H 1.09004 * 109.46801 * 174.99718 * 14 11 10 40 40 H 0.96706 * 117.00022 * 180.02562 * 17 15 14 41 41 H 1.09004 * 109.47166 * 149.71460 * 19 18 4 42 42 H 1.08994 * 109.47507 * 29.71166 * 19 18 4 43 43 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3236 1.1335 0.0000 4 6 3.6197 0.7146 0.0059 5 7 4.7484 1.5292 0.0126 6 6 4.6118 2.8700 0.0174 7 8 3.5044 3.3673 0.0153 8 6 5.8225 3.7437 0.0240 9 8 6.9296 3.2465 0.0247 10 7 5.6859 5.0845 0.0282 11 6 6.8738 5.9419 0.0342 12 1 7.6626 5.4739 -0.5548 13 6 7.3573 6.1334 1.4732 14 6 6.5238 7.3025 -0.5716 15 6 6.1654 7.1281 -2.0249 16 8 6.1872 6.0282 -2.5247 17 8 5.8219 8.1945 -2.7641 18 7 3.6090 -0.6440 0.0006 19 6 4.7858 -1.5164 0.0016 20 6 5.1902 -1.8158 -1.4190 21 1 4.6272 -1.3977 -2.2403 22 6 6.2828 -2.6185 -1.6701 23 7 6.9686 -3.1274 -0.6699 24 14 6.7886 -2.9834 -3.4308 25 1 7.7524 -1.9524 -3.8927 26 1 7.4276 -4.3224 -3.4949 27 1 5.5881 -2.9656 -4.3047 28 7 2.2719 -1.0616 0.0005 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3633 0.8900 -0.5137 31 1 -0.3633 -0.8900 -0.5139 32 1 1.9870 2.1597 -0.0004 33 1 5.6333 1.1318 0.0140 34 1 4.8010 5.4818 0.0273 35 1 6.5685 6.6014 2.0622 36 1 7.6066 5.1640 1.9048 37 1 8.2413 6.7709 1.4776 38 1 5.6760 7.7309 -0.0372 39 1 7.3816 7.9696 -0.4864 40 1 5.5999 8.0329 -3.6914 41 1 4.5473 -2.4477 0.5154 42 1 5.6073 -1.0178 0.5158 43 1 7.7370 -3.6924 -0.8466 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594313897.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:42 Heat of formation + Delta-G solvation = -84.254508 kcal Electronic energy + Delta-G solvation = -29234.375092 eV Core-core repulsion = 24895.697325 eV Total energy + Delta-G solvation = -4338.677768 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.20802 -40.72592 -40.00916 -38.49395 -36.82101 -36.03105 -34.82605 -33.77162 -32.11028 -31.96685 -29.25642 -28.91299 -28.45527 -26.04262 -25.33163 -23.16647 -22.72642 -21.36134 -20.82512 -19.93004 -19.53536 -18.40769 -17.95332 -17.13379 -16.99036 -16.78497 -16.39158 -16.17989 -15.92123 -15.51752 -14.85023 -14.59204 -14.28991 -14.10982 -14.05050 -13.77613 -13.21142 -12.97578 -12.94283 -12.79501 -12.74376 -12.53297 -12.38399 -12.05215 -11.84846 -11.84651 -11.63214 -11.52269 -11.38374 -11.04686 -10.91586 -10.83141 -10.50396 -10.29154 -9.82074 -9.78078 -9.49539 -9.46687 -8.66316 -7.94651 -7.53423 -6.28027 -4.36318 1.29911 1.84918 2.12797 2.59025 2.66511 3.22691 3.23793 3.27951 3.28999 3.35476 3.59293 3.82133 4.01870 4.29959 4.41103 4.52672 4.64172 4.93751 4.99426 5.05609 5.06519 5.29677 5.32145 5.56099 5.56683 5.83421 6.00343 6.05052 6.08609 6.11164 6.15398 6.16934 6.32170 6.54642 6.84718 6.95979 7.04467 7.41500 7.49964 7.52318 7.57854 7.67994 7.83697 7.87887 8.12129 8.59198 8.72243 9.31220 10.79436 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009488 B = 0.003336 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2950.508238 B = 8390.237676 C = 9889.831046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.049 3.951 3 C -0.288 4.288 4 C 0.294 3.706 5 N -0.607 5.607 6 C 0.514 3.486 7 O -0.499 6.499 8 C 0.524 3.476 9 O -0.506 6.506 10 N -0.694 5.694 11 C 0.151 3.849 12 H 0.104 0.896 13 C -0.165 4.165 14 C -0.123 4.123 15 C 0.469 3.531 16 O -0.497 6.497 17 O -0.520 6.520 18 N -0.341 5.341 19 C 0.255 3.745 20 C -0.542 4.542 21 H 0.065 0.935 22 C 0.068 3.932 23 N -0.889 5.889 24 Si 0.906 3.094 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 N -0.278 5.278 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.162 0.838 33 H 0.428 0.572 34 H 0.410 0.590 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.115 0.885 39 H 0.125 0.875 40 H 0.413 0.587 41 H 0.058 0.942 42 H 0.046 0.954 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.696 24.093 2.912 24.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.319 4.319 4 C 0.072 3.928 5 N -0.255 5.255 6 C 0.294 3.706 7 O -0.373 6.373 8 C 0.304 3.696 9 O -0.380 6.380 10 N -0.348 5.348 11 C 0.046 3.954 12 H 0.122 0.878 13 C -0.223 4.223 14 C -0.161 4.161 15 C 0.310 3.690 16 O -0.383 6.383 17 O -0.333 6.333 18 N -0.127 5.127 19 C 0.138 3.862 20 C -0.580 4.580 21 H 0.083 0.917 22 C -0.136 4.136 23 N -0.526 5.526 24 Si 0.733 3.267 25 H -0.202 1.202 26 H -0.208 1.208 27 H -0.196 1.196 28 N -0.103 5.103 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.180 0.820 33 H 0.267 0.733 34 H 0.246 0.754 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.133 0.867 39 H 0.143 0.857 40 H 0.272 0.728 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.188 22.380 3.233 22.643 hybrid contribution 0.467 0.418 -1.654 1.769 sum -0.722 22.798 1.579 22.864 Atomic orbital electron populations 1.20027 0.87452 1.02520 1.02089 1.22014 0.96587 0.90898 1.02047 1.21273 0.88921 1.00515 1.21235 1.17978 0.87548 0.83494 1.03784 1.42300 1.09510 1.04875 1.68817 1.19902 0.89683 0.82435 0.78565 1.90684 1.25970 1.73896 1.46752 1.19675 0.88945 0.83336 0.77650 1.90818 1.26164 1.74092 1.46880 1.45580 1.10395 1.05014 1.73790 1.20903 0.88760 0.88044 0.97663 0.87755 1.22203 1.01723 1.03628 0.94762 1.21751 1.05941 0.99682 0.88700 1.23397 0.73627 0.81989 0.89958 1.90849 1.47633 1.26640 1.73153 1.84498 1.80184 1.39875 1.28763 1.49581 1.06569 1.01918 1.54584 1.19687 0.77733 0.89703 0.99105 1.21321 1.13355 1.32116 0.91241 0.91675 1.24927 0.95590 0.94850 0.98235 1.69916 1.19004 1.32656 1.31063 0.86344 0.78873 0.77817 0.83644 1.20232 1.20774 1.19619 1.77356 0.86109 1.21806 1.25065 0.91314 0.91105 0.91428 0.82036 0.73278 0.75377 0.91735 0.90906 0.90841 0.86697 0.85667 0.72823 0.92354 0.93628 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.44 36.01 0.38 -0.53 16 2 C 0.05 0.99 7.20 -82.46 -0.59 0.40 16 3 C -0.29 -5.87 9.58 -39.76 -0.38 -6.25 16 4 C 0.29 6.41 7.68 -152.85 -1.17 5.23 16 5 N -0.61 -11.74 5.40 -11.80 -0.06 -11.80 16 6 C 0.51 8.74 7.85 -11.66 -0.09 8.65 16 7 O -0.50 -8.65 13.60 5.46 0.07 -8.58 16 8 C 0.52 7.82 7.85 -11.65 -0.09 7.73 16 9 O -0.51 -8.75 16.14 5.49 0.09 -8.66 16 10 N -0.69 -7.47 4.21 -54.28 -0.23 -7.70 16 11 C 0.15 1.23 2.14 -67.93 -0.15 1.08 16 12 H 0.10 1.10 7.39 -51.93 -0.38 0.72 16 13 C -0.16 -1.05 9.48 37.16 0.35 -0.69 16 14 C -0.12 -0.61 5.35 -27.88 -0.15 -0.76 16 15 C 0.47 3.81 8.19 36.01 0.29 4.11 16 16 O -0.50 -6.38 16.11 -18.75 -0.30 -6.68 16 17 O -0.52 -3.11 13.42 -39.25 -0.53 -3.63 16 18 N -0.34 -8.21 3.62 -61.47 -0.22 -8.43 16 19 C 0.26 6.62 6.02 -5.20 -0.03 6.59 16 20 C -0.54 -15.17 9.39 -34.44 -0.32 -15.49 16 21 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 22 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 23 N -0.89 -25.21 13.29 55.43 0.74 -24.47 16 24 Si 0.91 21.62 29.54 -169.99 -5.02 16.60 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 28 N -0.28 -6.52 12.56 33.64 0.42 -6.10 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.16 3.10 5.83 -52.49 -0.31 2.79 16 33 H 0.43 8.36 7.45 -40.82 -0.30 8.05 16 34 H 0.41 3.80 8.07 -40.82 -0.33 3.47 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.13 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.41 1.18 9.10 45.56 0.41 1.60 16 41 H 0.06 1.60 8.14 -51.93 -0.42 1.18 16 42 H 0.05 1.16 7.51 -51.93 -0.39 0.77 16 43 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 380.60 15.07 5.74 5.74 Total: -1.00 -36.12 380.60 -6.01 -42.13 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -4.65 Total: 9.75 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: -2.05 Total: 11.84 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: 0.64 Total: -58.50 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.67 Total: -27.56 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.12 -6.01 -42.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594313897.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.120 kcal (2) G-P(sol) polarization free energy of solvation -36.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds