Wall clock time and date at job start Tue Mar 31 2020 21:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39697 * 125.76650 * 2 1 4 4 C 1.36217 * 107.85426 * 179.73988 * 3 2 1 5 5 N 1.39197 * 126.26926 * 180.24236 * 4 3 2 6 6 C 1.34773 * 120.00383 * 0.17585 * 5 4 3 7 7 O 1.21394 * 119.99830 * 359.97438 * 6 5 4 8 8 C 1.49304 * 120.00113 * 180.02562 * 6 5 4 9 9 O 1.21358 * 119.99943 * 0.02562 * 8 6 5 10 10 N 1.34778 * 119.99903 * 179.97438 * 8 6 5 11 11 C 1.46501 * 120.00145 * 180.02562 * 10 8 6 12 12 H 1.09000 * 109.46973 * 34.99688 * 11 10 8 13 13 C 1.53008 * 109.46770 * 275.00362 * 11 10 8 14 14 C 1.52997 * 109.47098 * 155.00322 * 11 10 8 15 15 C 1.50699 * 109.47249 * 294.99785 * 14 11 10 16 16 O 1.20827 * 119.99779 * 0.02562 * 15 14 11 17 17 O 1.34225 * 120.00103 * 180.02562 * 15 14 11 18 18 N 1.35860 * 107.45724 * 0.38932 * 4 3 2 19 19 C 1.46491 * 126.09683 * 179.87697 * 18 4 3 20 20 C 1.50702 * 109.46957 * 269.71194 * 19 18 4 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72213 * 20 19 18 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 19 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 19 25 25 H 1.48501 * 109.47188 * 90.00793 * 24 22 20 26 26 H 1.48501 * 109.47085 * 210.00372 * 24 22 20 27 27 H 1.48498 * 109.47634 * 330.00608 * 24 22 20 28 28 N 1.30845 * 125.77207 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.46827 * 269.99402 * 1 2 3 30 30 H 1.08996 * 109.47014 * 29.99063 * 1 2 3 31 31 H 1.08999 * 109.47158 * 149.99822 * 1 2 3 32 32 H 1.08001 * 126.07300 * 359.97438 * 3 2 1 33 33 H 0.97001 * 119.99452 * 180.17249 * 5 4 3 34 34 H 0.96997 * 119.99719 * 0.02562 * 10 8 6 35 35 H 1.09000 * 109.46822 * 299.99419 * 13 11 10 36 36 H 1.08996 * 109.47179 * 59.99967 * 13 11 10 37 37 H 1.08997 * 109.46480 * 179.97438 * 13 11 10 38 38 H 1.08993 * 109.47391 * 55.00304 * 14 11 10 39 39 H 1.09004 * 109.46801 * 174.99718 * 14 11 10 40 40 H 0.96706 * 117.00022 * 180.02562 * 17 15 14 41 41 H 1.09004 * 109.47166 * 149.71460 * 19 18 4 42 42 H 1.08994 * 109.47507 * 29.71166 * 19 18 4 43 43 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3236 1.1335 0.0000 4 6 3.6197 0.7146 0.0059 5 7 4.7484 1.5292 0.0126 6 6 4.6118 2.8700 0.0174 7 8 3.5044 3.3673 0.0153 8 6 5.8225 3.7437 0.0240 9 8 6.9296 3.2465 0.0247 10 7 5.6859 5.0845 0.0282 11 6 6.8738 5.9419 0.0342 12 1 7.6626 5.4739 -0.5548 13 6 7.3573 6.1334 1.4732 14 6 6.5238 7.3025 -0.5716 15 6 6.1654 7.1281 -2.0249 16 8 6.1872 6.0282 -2.5247 17 8 5.8219 8.1945 -2.7641 18 7 3.6090 -0.6440 0.0006 19 6 4.7858 -1.5164 0.0016 20 6 5.1902 -1.8158 -1.4190 21 1 4.6272 -1.3977 -2.2403 22 6 6.2828 -2.6185 -1.6701 23 7 6.9686 -3.1274 -0.6699 24 14 6.7886 -2.9834 -3.4308 25 1 7.7524 -1.9524 -3.8927 26 1 7.4276 -4.3224 -3.4949 27 1 5.5881 -2.9656 -4.3047 28 7 2.2719 -1.0616 0.0005 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3633 0.8900 -0.5137 31 1 -0.3633 -0.8900 -0.5139 32 1 1.9870 2.1597 -0.0004 33 1 5.6333 1.1318 0.0140 34 1 4.8010 5.4818 0.0273 35 1 6.5685 6.6014 2.0622 36 1 7.6066 5.1640 1.9048 37 1 8.2413 6.7709 1.4776 38 1 5.6760 7.7309 -0.0372 39 1 7.3816 7.9696 -0.4864 40 1 5.5999 8.0329 -3.6914 41 1 4.5473 -2.4477 0.5154 42 1 5.6073 -1.0178 0.5158 43 1 7.7370 -3.6924 -0.8466 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594313897.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:41 Heat of formation + Delta-G solvation = -112.298644 kcal Electronic energy + Delta-G solvation = -29235.591177 eV Core-core repulsion = 24895.697325 eV Total energy + Delta-G solvation = -4339.893853 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.65891 -41.73098 -41.11387 -39.77416 -37.59975 -36.85793 -36.30438 -35.69591 -33.88559 -32.88184 -30.89352 -30.11245 -29.40335 -27.84969 -26.60013 -24.80027 -23.80197 -22.51833 -21.65566 -21.46269 -20.95517 -19.33237 -19.00119 -18.89478 -18.27236 -18.00258 -17.55231 -17.29844 -17.14180 -16.63598 -16.42777 -16.18207 -15.85011 -15.41914 -15.10057 -14.71119 -14.64382 -14.47144 -14.09677 -13.85754 -13.62381 -13.52426 -13.45859 -13.31219 -13.15296 -13.00479 -12.94532 -12.77300 -12.69351 -12.49660 -12.33553 -12.09595 -12.07999 -11.75551 -11.61441 -11.42972 -10.85988 -10.79774 -10.41519 -9.70653 -9.20523 -8.40406 -6.57885 -0.04931 0.81312 1.07779 1.25657 1.33271 1.33653 1.45120 1.78335 1.81860 2.10645 2.13537 2.28306 2.41239 2.90204 3.16720 3.47581 3.77173 4.03996 4.11877 4.14986 4.44987 4.48221 4.57932 4.64648 4.65660 4.67517 4.77141 4.79953 4.88123 4.91983 4.96764 5.14988 5.17541 5.22691 5.34036 5.46336 5.67166 5.71947 5.77065 5.91666 5.95141 6.15934 6.44094 6.57342 6.76627 6.93476 7.00573 7.13873 8.66544 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009488 B = 0.003336 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2950.508238 B = 8390.237676 C = 9889.831046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.060 3.940 3 C -0.291 4.291 4 C 0.287 3.713 5 N -0.616 5.616 6 C 0.515 3.485 7 O -0.500 6.500 8 C 0.525 3.475 9 O -0.537 6.537 10 N -0.672 5.672 11 C 0.143 3.857 12 H 0.076 0.924 13 C -0.158 4.158 14 C -0.113 4.113 15 C 0.471 3.529 16 O -0.555 6.555 17 O -0.513 6.513 18 N -0.367 5.367 19 C 0.273 3.727 20 C -0.559 4.559 21 H 0.048 0.952 22 C 0.026 3.974 23 N -0.913 5.913 24 Si 0.969 3.031 25 H -0.269 1.269 26 H -0.269 1.269 27 H -0.274 1.274 28 N -0.322 5.322 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.178 0.822 33 H 0.424 0.576 34 H 0.419 0.581 35 H 0.085 0.915 36 H 0.042 0.958 37 H 0.100 0.900 38 H 0.148 0.852 39 H 0.163 0.837 40 H 0.425 0.575 41 H 0.033 0.967 42 H 0.042 0.958 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.350 27.104 2.732 27.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.105 4.105 3 C -0.323 4.323 4 C 0.065 3.935 5 N -0.264 5.264 6 C 0.296 3.704 7 O -0.373 6.373 8 C 0.304 3.696 9 O -0.414 6.414 10 N -0.325 5.325 11 C 0.040 3.960 12 H 0.094 0.906 13 C -0.216 4.216 14 C -0.150 4.150 15 C 0.315 3.685 16 O -0.445 6.445 17 O -0.326 6.326 18 N -0.153 5.153 19 C 0.154 3.846 20 C -0.598 4.598 21 H 0.066 0.934 22 C -0.176 4.176 23 N -0.551 5.551 24 Si 0.793 3.207 25 H -0.194 1.194 26 H -0.193 1.193 27 H -0.199 1.199 28 N -0.147 5.147 29 H 0.111 0.889 30 H 0.115 0.885 31 H 0.091 0.909 32 H 0.195 0.805 33 H 0.262 0.738 34 H 0.257 0.743 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.119 0.881 38 H 0.166 0.834 39 H 0.180 0.820 40 H 0.286 0.714 41 H 0.051 0.949 42 H 0.059 0.941 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.869 25.487 3.061 25.738 hybrid contribution 0.591 -0.332 -1.587 1.726 sum -1.278 25.155 1.473 25.231 Atomic orbital electron populations 1.20260 0.83406 1.04097 1.04114 1.22936 0.98924 0.89757 0.98887 1.21547 0.88331 1.01272 1.21108 1.18402 0.88925 0.82970 1.03155 1.42465 1.08724 1.05590 1.69577 1.20406 0.90620 0.81811 0.77529 1.90649 1.26337 1.73745 1.46561 1.19355 0.87522 0.84460 0.78217 1.90808 1.26724 1.74780 1.49088 1.45655 1.12064 1.03614 1.71187 1.21164 0.86922 0.88963 0.98948 0.90574 1.22166 1.03567 1.02779 0.93121 1.21859 1.08725 0.97975 0.86450 1.24025 0.72065 0.81314 0.91083 1.90846 1.50386 1.28800 1.74485 1.84477 1.79478 1.38871 1.29812 1.49352 1.06439 1.02572 1.56899 1.19213 0.78571 0.89026 0.97821 1.21420 1.13847 1.32831 0.91654 0.93414 1.25716 0.95290 0.94327 1.02251 1.69990 1.19325 1.32852 1.32921 0.85384 0.78378 0.78285 0.78650 1.19435 1.19336 1.19929 1.77315 0.86109 1.23738 1.27499 0.88917 0.88452 0.90896 0.80523 0.73776 0.74298 0.89640 0.93853 0.88099 0.83417 0.81988 0.71366 0.94910 0.94066 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.62 10.44 71.24 0.74 -0.87 16 2 C 0.06 2.39 7.20 43.06 0.31 2.70 16 3 C -0.29 -11.77 9.58 22.15 0.21 -11.56 16 4 C 0.29 12.85 7.68 131.25 1.01 13.86 16 5 N -0.62 -24.75 5.40 -309.58 -1.67 -26.43 16 6 C 0.51 17.77 7.85 87.22 0.68 18.46 16 7 O -0.50 -16.98 13.60 -3.38 -0.05 -17.02 16 8 C 0.53 15.94 7.85 87.22 0.68 16.63 16 9 O -0.54 -19.38 16.14 -3.27 -0.05 -19.43 16 10 N -0.67 -13.84 4.21 -444.01 -1.87 -15.71 16 11 C 0.14 2.10 2.14 44.99 0.10 2.20 16 12 H 0.08 1.61 7.39 -2.39 -0.02 1.59 16 13 C -0.16 -1.64 9.48 71.98 0.68 -0.96 16 14 C -0.11 -0.73 5.35 29.85 0.16 -0.57 16 15 C 0.47 6.75 8.19 71.24 0.58 7.33 16 16 O -0.55 -14.13 16.11 21.96 0.35 -13.78 16 17 O -0.51 -4.86 13.42 -51.37 -0.69 -5.55 16 18 N -0.37 -18.42 3.62 -348.40 -1.26 -19.68 16 19 C 0.27 14.92 6.02 85.64 0.52 15.44 16 20 C -0.56 -32.55 9.39 25.60 0.24 -32.31 16 21 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 22 C 0.03 1.46 5.46 84.66 0.46 1.93 16 23 N -0.91 -52.85 13.29 21.45 0.28 -52.57 16 24 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 25 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 27 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 28 N -0.32 -15.46 12.56 -47.48 -0.60 -16.05 16 29 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.18 6.53 5.83 -2.91 -0.02 6.51 16 33 H 0.42 17.62 7.45 -92.71 -0.69 16.93 16 34 H 0.42 7.02 8.07 -92.71 -0.75 6.27 16 35 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.15 0.08 8.14 -2.39 -0.02 0.06 16 39 H 0.16 -0.03 8.14 -2.38 -0.02 -0.05 16 40 H 0.43 1.70 9.10 -74.05 -0.67 1.02 16 41 H 0.03 1.92 8.14 -2.38 -0.02 1.90 16 42 H 0.04 2.25 7.51 -2.39 -0.02 2.23 16 43 H 0.28 14.84 8.31 -92.70 -0.77 14.07 16 Total: -1.00 -82.24 380.60 1.85 -80.39 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: -1.01 Total: 26.67 kcal Atomic # 6 Polarization: 25.88 SS G_CDS: 6.38 Total: 32.26 kcal Atomic # 7 Polarization: -125.33 SS G_CDS: -5.12 Total: -130.44 kcal Atomic # 8 Polarization: -55.35 SS G_CDS: -0.43 Total: -55.79 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -82.24 1.85 -80.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594313897.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.905 kcal (2) G-P(sol) polarization free energy of solvation -82.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds