Wall clock time and date at job start Tue Mar 31 2020 21:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39696 * 125.76897 * 2 1 4 4 C 1.36219 * 107.85485 * 179.71308 * 3 2 1 5 5 N 1.39199 * 126.27080 * 180.26645 * 4 3 2 6 6 C 1.34777 * 120.00053 * 0.17906 * 5 4 3 7 7 O 1.21392 * 119.99965 * 0.02562 * 6 5 4 8 8 C 1.49304 * 120.00068 * 179.97438 * 6 5 4 9 9 O 1.21368 * 119.99727 * 0.02562 * 8 6 5 10 10 N 1.34773 * 120.00278 * 180.02562 * 8 6 5 11 11 C 1.46500 * 120.00522 * 180.02562 * 10 8 6 12 12 H 1.09000 * 109.47053 * 325.00340 * 11 10 8 13 13 C 1.53003 * 109.46700 * 84.99973 * 11 10 8 14 14 C 1.52993 * 109.47488 * 205.00181 * 11 10 8 15 15 C 1.50701 * 109.47322 * 64.99843 * 14 11 10 16 16 O 1.20828 * 119.99665 * 0.02562 * 15 14 11 17 17 O 1.34231 * 120.00195 * 179.97438 * 15 14 11 18 18 N 1.35860 * 107.45711 * 0.42239 * 4 3 2 19 19 C 1.46491 * 126.09683 * 179.84255 * 18 4 3 20 20 C 1.50702 * 109.46957 * 269.71194 * 19 18 4 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72213 * 20 19 18 23 23 N 1.31514 * 119.99985 * 180.27663 * 22 20 19 24 24 Si 1.86800 * 119.99777 * 0.28166 * 22 20 19 25 25 H 1.48498 * 109.47109 * 89.99834 * 24 22 20 26 26 H 1.48507 * 109.46754 * 209.99574 * 24 22 20 27 27 H 1.48498 * 109.47278 * 329.99405 * 24 22 20 28 28 N 1.30848 * 125.77101 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47246 * 270.00352 * 1 2 3 30 30 H 1.09002 * 109.47095 * 30.00331 * 1 2 3 31 31 H 1.09001 * 109.46834 * 149.99902 * 1 2 3 32 32 H 1.07999 * 126.07296 * 359.97438 * 3 2 1 33 33 H 0.96999 * 119.99639 * 180.19076 * 5 4 3 34 34 H 0.97008 * 119.99599 * 0.02562 * 10 8 6 35 35 H 1.09000 * 109.47067 * 60.00376 * 13 11 10 36 36 H 1.08998 * 109.46605 * 180.02562 * 13 11 10 37 37 H 1.08998 * 109.47093 * 299.99879 * 13 11 10 38 38 H 1.08999 * 109.47147 * 184.99938 * 14 11 10 39 39 H 1.09004 * 109.47181 * 304.99832 * 14 11 10 40 40 H 0.96699 * 116.99593 * 180.02562 * 17 15 14 41 41 H 1.09004 * 109.47166 * 149.71460 * 19 18 4 42 42 H 1.08994 * 109.47507 * 29.71166 * 19 18 4 43 43 H 0.96996 * 119.99730 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3236 1.1335 0.0000 4 6 3.6197 0.7145 0.0065 5 7 4.7484 1.5290 0.0139 6 6 4.6119 2.8699 0.0188 7 8 3.5045 3.3672 0.0172 8 6 5.8226 3.7436 0.0274 9 8 6.9297 3.2463 0.0294 10 7 5.6860 5.0843 0.0328 11 6 6.8739 5.9417 0.0406 12 1 7.6592 5.4691 0.6306 13 6 7.3659 6.1444 -1.3939 14 6 6.5204 7.2975 0.6550 15 6 6.1533 7.1117 2.1047 16 8 6.1730 6.0081 2.5962 17 8 5.8056 8.1724 2.8503 18 7 3.6089 -0.6441 0.0009 19 6 4.7857 -1.5165 0.0015 20 6 5.1900 -1.8156 -1.4191 21 1 4.6270 -1.3972 -2.2403 22 6 6.2826 -2.6182 -1.6705 23 7 6.6387 -2.8748 -2.9103 24 14 7.2568 -3.3414 -0.2502 25 1 6.6853 -4.6607 0.1212 26 1 8.6741 -3.5132 -0.6589 27 1 7.1856 -2.4250 0.9162 28 7 2.2719 -1.0617 0.0005 29 1 -0.3633 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 1.9870 2.1597 -0.0004 33 1 5.6333 1.1316 0.0154 34 1 4.8011 5.4817 0.0315 35 1 6.5806 6.6170 -1.9839 36 1 8.2500 6.7819 -1.3881 37 1 7.6178 5.1785 -1.8316 38 1 7.3787 7.9652 0.5802 39 1 5.6757 7.7302 0.1189 40 1 5.5788 8.0035 3.7750 41 1 4.5472 -2.4479 0.5151 42 1 5.6073 -1.0181 0.5158 43 1 7.4071 -3.4397 -3.0871 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594313898.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:46 Heat of formation + Delta-G solvation = -78.538354 kcal Electronic energy + Delta-G solvation = -29239.185818 eV Core-core repulsion = 24900.755921 eV Total energy + Delta-G solvation = -4338.429897 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.26614 -40.78340 -40.06800 -38.54173 -36.85734 -36.06784 -34.89539 -33.79004 -32.18536 -32.01881 -29.59070 -28.94306 -28.57522 -26.33604 -25.37999 -23.15658 -22.44116 -21.38021 -20.85118 -19.99320 -19.59088 -18.45858 -18.00646 -17.17457 -17.16411 -17.01106 -16.52970 -16.23424 -15.98245 -15.56991 -14.87556 -14.64309 -14.29378 -14.16535 -14.01651 -13.75732 -13.24116 -13.19819 -12.98406 -12.80072 -12.76351 -12.59426 -12.38648 -12.33393 -11.91703 -11.90277 -11.89517 -11.55639 -11.45139 -11.12899 -10.96224 -10.79490 -10.59277 -10.24226 -9.89430 -9.72871 -9.53879 -9.49478 -8.81390 -8.00459 -7.60016 -6.29445 -4.34030 1.25680 1.80168 2.07462 2.55238 2.59828 3.12289 3.16073 3.20989 3.22161 3.26036 3.53333 3.72468 4.00009 4.19247 4.35851 4.50564 4.62841 4.92606 4.96566 4.97781 5.06119 5.24785 5.30217 5.50942 5.55920 5.86246 5.96359 6.00961 6.01676 6.03208 6.10412 6.12085 6.22081 6.34798 6.50709 6.69522 6.93256 7.22624 7.34002 7.41399 7.47605 7.51414 7.78945 8.00349 8.26780 8.49898 8.75446 9.25133 10.82760 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010635 B = 0.003267 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.298172 B = 8567.321679 C =10231.316079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.054 3.946 3 C -0.285 4.285 4 C 0.298 3.702 5 N -0.609 5.609 6 C 0.515 3.485 7 O -0.497 6.497 8 C 0.525 3.475 9 O -0.507 6.507 10 N -0.693 5.693 11 C 0.151 3.849 12 H 0.104 0.896 13 C -0.166 4.166 14 C -0.123 4.123 15 C 0.471 3.529 16 O -0.499 6.499 17 O -0.520 6.520 18 N -0.341 5.341 19 C 0.228 3.772 20 C -0.547 4.547 21 H 0.082 0.918 22 C 0.081 3.919 23 N -0.882 5.882 24 Si 0.873 3.127 25 H -0.270 1.270 26 H -0.279 1.279 27 H -0.264 1.264 28 N -0.276 5.276 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.164 0.836 33 H 0.427 0.573 34 H 0.410 0.590 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.126 0.874 39 H 0.116 0.884 40 H 0.412 0.588 41 H 0.052 0.948 42 H 0.041 0.959 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.207 23.784 8.109 25.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.111 4.111 3 C -0.316 4.316 4 C 0.077 3.923 5 N -0.256 5.256 6 C 0.295 3.705 7 O -0.371 6.371 8 C 0.305 3.695 9 O -0.381 6.381 10 N -0.347 5.347 11 C 0.047 3.953 12 H 0.122 0.878 13 C -0.224 4.224 14 C -0.161 4.161 15 C 0.312 3.688 16 O -0.385 6.385 17 O -0.332 6.332 18 N -0.126 5.126 19 C 0.109 3.891 20 C -0.585 4.585 21 H 0.100 0.900 22 C -0.124 4.124 23 N -0.519 5.519 24 Si 0.699 3.301 25 H -0.195 1.195 26 H -0.204 1.204 27 H -0.189 1.189 28 N -0.101 5.101 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.182 0.818 33 H 0.266 0.734 34 H 0.247 0.753 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.144 0.856 39 H 0.134 0.866 40 H 0.271 0.729 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.717 22.104 7.712 23.422 hybrid contribution 0.694 0.198 1.153 1.361 sum -0.022 22.301 8.866 23.999 Atomic orbital electron populations 1.20044 0.87265 1.02701 1.02154 1.22039 0.96663 0.90816 1.01597 1.21290 0.88825 1.00609 1.20907 1.17953 0.87651 0.83187 1.03551 1.42290 1.09386 1.04950 1.69007 1.19909 0.89733 0.82370 0.78454 1.90687 1.25974 1.73858 1.46574 1.19647 0.88895 0.83346 0.77660 1.90816 1.26159 1.74106 1.46975 1.45581 1.10444 1.04994 1.73691 1.20902 0.88631 0.88042 0.97721 0.87792 1.22214 1.01723 1.03745 0.94758 1.21763 1.05943 0.99750 0.88671 1.23409 0.73538 0.82024 0.89835 1.90829 1.47958 1.26298 1.73458 1.84507 1.79968 1.40023 1.28745 1.49114 1.06223 1.01772 1.55483 1.20010 0.79225 0.89987 0.99888 1.21165 1.14251 1.32863 0.90207 0.90004 1.24809 0.96480 0.95216 0.95848 1.69867 1.26698 1.36650 1.18674 0.86900 0.80065 0.80542 0.82604 1.19491 1.20398 1.18894 1.77367 0.85765 1.21760 1.25172 0.91251 0.90962 0.91300 0.81837 0.73419 0.75347 0.91674 0.90825 0.90781 0.85623 0.86639 0.72863 0.92976 0.94085 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.44 36.01 0.38 -0.52 16 2 C 0.05 1.06 7.20 -82.47 -0.59 0.47 16 3 C -0.28 -5.70 9.58 -39.76 -0.38 -6.08 16 4 C 0.30 6.37 7.68 -152.85 -1.17 5.20 16 5 N -0.61 -11.53 5.40 -11.80 -0.06 -11.60 16 6 C 0.51 8.62 7.85 -11.65 -0.09 8.53 16 7 O -0.50 -8.48 13.60 5.46 0.07 -8.41 16 8 C 0.52 7.71 7.85 -11.66 -0.09 7.62 16 9 O -0.51 -8.60 16.14 5.48 0.09 -8.51 16 10 N -0.69 -7.34 4.21 -54.29 -0.23 -7.57 16 11 C 0.15 1.21 2.14 -67.93 -0.15 1.06 16 12 H 0.10 1.06 7.39 -51.93 -0.38 0.67 16 13 C -0.17 -1.11 9.48 37.16 0.35 -0.76 16 14 C -0.12 -0.58 5.35 -27.89 -0.15 -0.73 16 15 C 0.47 3.55 8.19 36.01 0.29 3.84 16 16 O -0.50 -5.97 16.11 -18.75 -0.30 -6.27 16 17 O -0.52 -2.81 13.42 -39.26 -0.53 -3.34 16 18 N -0.34 -8.00 3.62 -61.47 -0.22 -8.22 16 19 C 0.23 5.55 5.09 -5.20 -0.03 5.52 16 20 C -0.55 -15.40 9.94 -34.44 -0.34 -15.74 16 21 H 0.08 2.61 8.06 -52.49 -0.42 2.18 16 22 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 23 N -0.88 -26.30 13.96 55.43 0.77 -25.53 16 24 Si 0.87 20.40 27.47 -169.99 -4.67 15.73 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 28 N -0.28 -6.33 12.56 33.64 0.42 -5.91 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.16 3.07 5.83 -52.49 -0.31 2.77 16 33 H 0.43 8.05 7.45 -40.82 -0.30 7.75 16 34 H 0.41 3.73 8.07 -40.82 -0.33 3.40 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.13 0.27 8.14 -51.93 -0.42 -0.16 16 39 H 0.12 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.41 0.90 9.10 45.56 0.41 1.31 16 41 H 0.05 1.26 7.58 -51.93 -0.39 0.86 16 42 H 0.04 0.94 6.56 -51.93 -0.34 0.60 16 43 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 377.00 15.07 5.68 5.68 Total: -1.00 -37.08 377.00 -5.66 -42.74 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -4.61 Total: 10.61 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: -2.07 Total: 10.60 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: 0.68 Total: -58.82 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.67 Total: -26.53 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.67 Total: 15.73 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.08 -5.66 -42.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594313898.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.802 kcal (2) G-P(sol) polarization free energy of solvation -37.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds