Wall clock time and date at job start Tue Mar 31 2020 21:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39696 * 125.76897 * 2 1 4 4 C 1.36219 * 107.85485 * 179.71308 * 3 2 1 5 5 N 1.39199 * 126.27080 * 180.26645 * 4 3 2 6 6 C 1.34777 * 120.00053 * 0.17906 * 5 4 3 7 7 O 1.21392 * 119.99965 * 0.02562 * 6 5 4 8 8 C 1.49304 * 120.00068 * 179.97438 * 6 5 4 9 9 O 1.21368 * 119.99727 * 0.02562 * 8 6 5 10 10 N 1.34773 * 120.00278 * 180.02562 * 8 6 5 11 11 C 1.46500 * 120.00522 * 180.02562 * 10 8 6 12 12 H 1.09000 * 109.47053 * 325.00340 * 11 10 8 13 13 C 1.53003 * 109.46700 * 84.99973 * 11 10 8 14 14 C 1.52993 * 109.47488 * 205.00181 * 11 10 8 15 15 C 1.50701 * 109.47322 * 64.99843 * 14 11 10 16 16 O 1.20828 * 119.99665 * 0.02562 * 15 14 11 17 17 O 1.34231 * 120.00195 * 179.97438 * 15 14 11 18 18 N 1.35860 * 107.45711 * 0.42239 * 4 3 2 19 19 C 1.46491 * 126.09683 * 179.84255 * 18 4 3 20 20 C 1.50702 * 109.46957 * 269.71194 * 19 18 4 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72213 * 20 19 18 23 23 N 1.31514 * 119.99985 * 180.27663 * 22 20 19 24 24 Si 1.86800 * 119.99777 * 0.28166 * 22 20 19 25 25 H 1.48498 * 109.47109 * 89.99834 * 24 22 20 26 26 H 1.48507 * 109.46754 * 209.99574 * 24 22 20 27 27 H 1.48498 * 109.47278 * 329.99405 * 24 22 20 28 28 N 1.30848 * 125.77101 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47246 * 270.00352 * 1 2 3 30 30 H 1.09002 * 109.47095 * 30.00331 * 1 2 3 31 31 H 1.09001 * 109.46834 * 149.99902 * 1 2 3 32 32 H 1.07999 * 126.07296 * 359.97438 * 3 2 1 33 33 H 0.96999 * 119.99639 * 180.19076 * 5 4 3 34 34 H 0.97008 * 119.99599 * 0.02562 * 10 8 6 35 35 H 1.09000 * 109.47067 * 60.00376 * 13 11 10 36 36 H 1.08998 * 109.46605 * 180.02562 * 13 11 10 37 37 H 1.08998 * 109.47093 * 299.99879 * 13 11 10 38 38 H 1.08999 * 109.47147 * 184.99938 * 14 11 10 39 39 H 1.09004 * 109.47181 * 304.99832 * 14 11 10 40 40 H 0.96699 * 116.99593 * 180.02562 * 17 15 14 41 41 H 1.09004 * 109.47166 * 149.71460 * 19 18 4 42 42 H 1.08994 * 109.47507 * 29.71166 * 19 18 4 43 43 H 0.96996 * 119.99730 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3236 1.1335 0.0000 4 6 3.6197 0.7145 0.0065 5 7 4.7484 1.5290 0.0139 6 6 4.6119 2.8699 0.0188 7 8 3.5045 3.3672 0.0172 8 6 5.8226 3.7436 0.0274 9 8 6.9297 3.2463 0.0294 10 7 5.6860 5.0843 0.0328 11 6 6.8739 5.9417 0.0406 12 1 7.6592 5.4691 0.6306 13 6 7.3659 6.1444 -1.3939 14 6 6.5204 7.2975 0.6550 15 6 6.1533 7.1117 2.1047 16 8 6.1730 6.0081 2.5962 17 8 5.8056 8.1724 2.8503 18 7 3.6089 -0.6441 0.0009 19 6 4.7857 -1.5165 0.0015 20 6 5.1900 -1.8156 -1.4191 21 1 4.6270 -1.3972 -2.2403 22 6 6.2826 -2.6182 -1.6705 23 7 6.6387 -2.8748 -2.9103 24 14 7.2568 -3.3414 -0.2502 25 1 6.6853 -4.6607 0.1212 26 1 8.6741 -3.5132 -0.6589 27 1 7.1856 -2.4250 0.9162 28 7 2.2719 -1.0617 0.0005 29 1 -0.3633 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 1.9870 2.1597 -0.0004 33 1 5.6333 1.1316 0.0154 34 1 4.8011 5.4817 0.0315 35 1 6.5806 6.6170 -1.9839 36 1 8.2500 6.7819 -1.3881 37 1 7.6178 5.1785 -1.8316 38 1 7.3787 7.9652 0.5802 39 1 5.6757 7.7302 0.1189 40 1 5.5788 8.0035 3.7750 41 1 4.5472 -2.4479 0.5151 42 1 5.6073 -1.0181 0.5158 43 1 7.4071 -3.4397 -3.0871 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594313898.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:45 Heat of formation + Delta-G solvation = -108.465387 kcal Electronic energy + Delta-G solvation = -29240.483551 eV Core-core repulsion = 24900.755921 eV Total energy + Delta-G solvation = -4339.727630 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.69240 -41.74496 -41.11657 -39.78794 -37.60397 -36.85774 -36.32543 -35.66145 -34.03966 -32.88914 -31.21883 -30.20787 -29.40905 -28.04761 -26.61833 -24.46042 -23.77036 -22.52667 -21.65975 -21.48783 -20.98400 -19.36218 -19.29273 -18.99685 -18.32475 -18.05404 -17.54451 -17.31324 -17.16077 -16.56278 -16.51306 -16.08213 -15.84500 -15.44070 -15.06345 -14.92514 -14.71160 -14.55277 -14.16155 -13.86963 -13.78781 -13.58539 -13.53724 -13.31402 -13.18527 -13.03303 -12.96508 -12.74327 -12.59385 -12.48641 -12.24157 -12.09030 -11.93957 -11.85477 -11.60536 -11.46316 -10.95487 -10.87689 -10.42210 -9.70019 -9.22632 -8.46324 -6.58474 -0.06609 0.76747 1.06076 1.25918 1.30738 1.32606 1.41567 1.73130 1.79409 2.08666 2.13623 2.20965 2.37601 2.85272 3.15302 3.47532 3.71036 4.03457 4.07806 4.14576 4.39662 4.43403 4.45950 4.57013 4.57495 4.65538 4.66674 4.76076 4.85535 4.90821 4.95480 5.06796 5.13892 5.16299 5.21434 5.33494 5.67366 5.73775 5.80117 5.88456 6.04323 6.20669 6.43483 6.50417 6.75266 6.87442 7.01391 7.05935 8.70112 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010635 B = 0.003267 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.298172 B = 8567.321679 C =10231.316079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.063 3.937 3 C -0.290 4.290 4 C 0.290 3.710 5 N -0.616 5.616 6 C 0.515 3.485 7 O -0.499 6.499 8 C 0.525 3.475 9 O -0.536 6.536 10 N -0.672 5.672 11 C 0.145 3.855 12 H 0.079 0.921 13 C -0.161 4.161 14 C -0.114 4.114 15 C 0.473 3.527 16 O -0.553 6.553 17 O -0.513 6.513 18 N -0.366 5.366 19 C 0.238 3.762 20 C -0.555 4.555 21 H 0.026 0.974 22 C 0.026 3.974 23 N -0.931 5.931 24 Si 0.948 3.052 25 H -0.261 1.261 26 H -0.272 1.272 27 H -0.240 1.240 28 N -0.318 5.318 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.178 0.822 33 H 0.425 0.575 34 H 0.419 0.581 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.040 0.960 38 H 0.162 0.838 39 H 0.146 0.854 40 H 0.425 0.575 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.410 26.386 9.574 28.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 C -0.321 4.321 4 C 0.068 3.932 5 N -0.264 5.264 6 C 0.296 3.704 7 O -0.372 6.372 8 C 0.305 3.695 9 O -0.413 6.413 10 N -0.325 5.325 11 C 0.042 3.958 12 H 0.098 0.902 13 C -0.219 4.219 14 C -0.151 4.151 15 C 0.317 3.683 16 O -0.443 6.443 17 O -0.326 6.326 18 N -0.152 5.152 19 C 0.118 3.882 20 C -0.593 4.593 21 H 0.044 0.956 22 C -0.175 4.175 23 N -0.569 5.569 24 Si 0.769 3.231 25 H -0.185 1.185 26 H -0.197 1.197 27 H -0.164 1.164 28 N -0.143 5.143 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.091 0.909 32 H 0.195 0.805 33 H 0.263 0.737 34 H 0.257 0.743 35 H 0.102 0.898 36 H 0.120 0.880 37 H 0.059 0.941 38 H 0.180 0.820 39 H 0.164 0.836 40 H 0.287 0.713 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.960 24.809 9.189 26.473 hybrid contribution 0.637 -0.403 0.640 0.989 sum -0.323 24.405 9.828 26.312 Atomic orbital electron populations 1.20272 0.83381 1.04129 1.04192 1.22937 0.98949 0.89749 0.98636 1.21566 0.88395 1.01332 1.20855 1.18374 0.88969 0.82863 1.02952 1.42448 1.08691 1.05606 1.69687 1.20416 0.90637 0.81827 0.77472 1.90653 1.26375 1.73747 1.46436 1.19343 0.87523 0.84447 0.78229 1.90803 1.26661 1.74763 1.49106 1.45663 1.12084 1.03650 1.71147 1.21145 0.86928 0.89064 0.98712 0.90239 1.22181 1.03527 1.02674 0.93482 1.21848 1.08609 0.97950 0.86687 1.23949 0.72118 0.81411 0.90831 1.90826 1.50514 1.28316 1.74688 1.84483 1.79290 1.39037 1.29829 1.49005 1.06243 1.02415 1.57541 1.19758 0.80433 0.90759 0.97292 1.21212 1.14142 1.33045 0.90919 0.95563 1.25799 0.97426 0.95256 0.99012 1.70015 1.27697 1.37759 1.21450 0.85725 0.78141 0.80101 0.79175 1.18535 1.19678 1.16366 1.77316 0.85917 1.23588 1.27481 0.88755 0.88479 0.90900 0.80485 0.73700 0.74301 0.89844 0.88020 0.94079 0.82020 0.83584 0.71316 0.92599 0.92275 0.91573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.62 10.44 71.24 0.74 -0.87 16 2 C 0.06 2.44 7.20 43.06 0.31 2.75 16 3 C -0.29 -11.53 9.58 22.15 0.21 -11.32 16 4 C 0.29 12.62 7.68 131.25 1.01 13.63 16 5 N -0.62 -24.01 5.40 -309.58 -1.67 -25.68 16 6 C 0.51 17.42 7.85 87.22 0.68 18.11 16 7 O -0.50 -16.74 13.60 -3.38 -0.05 -16.78 16 8 C 0.53 15.62 7.85 87.22 0.68 16.30 16 9 O -0.54 -18.81 16.14 -3.30 -0.05 -18.87 16 10 N -0.67 -13.62 4.21 -444.02 -1.87 -15.49 16 11 C 0.14 2.08 2.14 44.99 0.10 2.18 16 12 H 0.08 1.60 7.39 -2.39 -0.02 1.58 16 13 C -0.16 -1.82 9.48 71.98 0.68 -1.13 16 14 C -0.11 -0.67 5.35 29.85 0.16 -0.51 16 15 C 0.47 6.14 8.19 71.24 0.58 6.73 16 16 O -0.55 -12.91 16.11 21.96 0.35 -12.56 16 17 O -0.51 -4.22 13.42 -51.42 -0.69 -4.92 16 18 N -0.37 -17.65 3.62 -348.40 -1.26 -18.92 16 19 C 0.24 11.78 5.09 85.64 0.44 12.21 16 20 C -0.56 -32.66 9.94 25.60 0.25 -32.40 16 21 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 22 C 0.03 1.48 5.47 84.66 0.46 1.94 16 23 N -0.93 -57.49 13.96 21.45 0.30 -57.19 16 24 Si 0.95 42.21 27.47 68.60 1.88 44.09 16 25 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 27 H -0.24 -9.72 6.54 99.48 0.65 -9.07 16 28 N -0.32 -14.85 12.56 -47.49 -0.60 -15.45 16 29 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.18 6.45 5.83 -2.91 -0.02 6.43 16 33 H 0.42 16.68 7.45 -92.71 -0.69 15.99 16 34 H 0.42 6.91 8.07 -92.70 -0.75 6.16 16 35 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.16 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.15 0.07 8.14 -2.38 -0.02 0.05 16 40 H 0.43 1.03 9.10 -74.06 -0.67 0.36 16 41 H 0.06 2.70 7.58 -2.38 -0.02 2.68 16 42 H 0.06 2.69 6.56 -2.39 -0.02 2.68 16 43 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -86.04 377.00 1.60 -84.44 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: -1.07 Total: 29.71 kcal Atomic # 6 Polarization: 21.29 SS G_CDS: 6.32 Total: 27.61 kcal Atomic # 7 Polarization: -127.62 SS G_CDS: -5.10 Total: -132.72 kcal Atomic # 8 Polarization: -52.69 SS G_CDS: -0.44 Total: -53.13 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 1.88 Total: 44.09 kcal Total: -86.04 1.60 -84.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594313898.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.027 kcal (2) G-P(sol) polarization free energy of solvation -86.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds