Wall clock time and date at job start Tue Mar 31 2020 21:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39696 * 125.76890 * 2 1 4 4 C 1.36213 * 107.86003 * 180.16466 * 3 2 1 5 5 N 1.39196 * 126.27405 * 179.84641 * 4 3 2 6 6 C 1.34777 * 119.99708 * 359.69181 * 5 4 3 7 7 O 1.21383 * 120.00397 * 359.97438 * 6 5 4 8 8 C 1.49313 * 119.99573 * 180.02562 * 6 5 4 9 9 O 1.21363 * 120.00015 * 359.97438 * 8 6 5 10 10 N 1.34777 * 119.99574 * 179.97438 * 8 6 5 11 11 C 1.46499 * 119.99665 * 179.72291 * 10 8 6 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 H 1.08998 * 109.46700 * 305.00136 * 12 11 10 14 14 C 1.53004 * 109.47137 * 65.00035 * 12 11 10 15 15 C 1.50699 * 109.47086 * 184.99976 * 12 11 10 16 16 O 1.20825 * 120.00436 * 0.02562 * 15 12 11 17 17 O 1.34229 * 119.99757 * 179.97438 * 15 12 11 18 18 N 1.35855 * 107.45334 * 359.58354 * 4 3 2 19 19 C 1.46503 * 126.09656 * 180.23958 * 18 4 3 20 20 C 1.50705 * 109.46708 * 90.00271 * 19 18 4 21 21 H 1.07998 * 120.00060 * 0.02562 * 20 19 18 22 22 C 1.37882 * 119.99685 * 179.97438 * 20 19 18 23 23 N 1.31514 * 119.99897 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99646 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46956 * 60.00376 * 24 22 20 26 26 H 1.48506 * 109.46801 * 179.97438 * 24 22 20 27 27 H 1.48490 * 109.47320 * 299.99740 * 24 22 20 28 28 N 1.30843 * 125.77348 * 179.69851 * 2 1 3 29 29 H 1.08995 * 109.47411 * 270.27747 * 1 2 3 30 30 H 1.08995 * 109.47276 * 30.27843 * 1 2 3 31 31 H 1.08999 * 109.46878 * 150.27470 * 1 2 3 32 32 H 1.08001 * 126.06933 * 0.02562 * 3 2 1 33 33 H 0.97000 * 120.00399 * 179.68727 * 5 4 3 34 34 H 0.97001 * 120.00485 * 0.02562 * 10 8 6 35 35 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 36 36 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 37 37 H 1.09003 * 109.46857 * 59.99834 * 14 12 11 38 38 H 1.08990 * 109.46949 * 180.02562 * 14 12 11 39 39 H 1.09000 * 109.46939 * 300.00085 * 14 12 11 40 40 H 0.96703 * 117.00091 * 179.97438 * 17 15 12 41 41 H 1.08996 * 109.47233 * 209.99893 * 19 18 4 42 42 H 1.09002 * 109.47263 * 330.00380 * 19 18 4 43 43 H 0.97002 * 119.99799 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3235 1.1335 0.0000 4 6 3.6197 0.7146 -0.0037 5 7 4.7484 1.5292 -0.0080 6 6 4.6117 2.8700 -0.0150 7 8 3.5044 3.3672 -0.0181 8 6 5.8225 3.7437 -0.0202 9 8 6.9296 3.2466 -0.0176 10 7 5.6858 5.0845 -0.0277 11 6 6.8737 5.9419 -0.0266 12 6 6.4431 7.4101 -0.0292 13 1 5.7767 7.5917 -0.8724 14 6 5.7122 7.7295 1.2765 15 6 7.6601 8.2903 -0.1519 16 8 8.7591 7.7943 -0.2299 17 8 7.5231 9.6254 -0.1756 18 7 3.6089 -0.6439 0.0034 19 6 4.7858 -1.5163 0.0076 20 6 5.1898 -1.8080 1.4299 21 1 4.6260 -1.3861 2.2487 22 6 6.2785 -2.6144 1.6857 23 7 6.9641 -3.1294 0.6885 24 14 6.7797 -2.9754 3.4486 25 1 5.6601 -3.6501 4.1532 26 1 7.9719 -3.8609 3.4529 27 1 7.1053 -1.7028 4.1411 28 7 2.2719 -1.0616 0.0056 29 1 -0.3634 0.0050 1.0276 30 1 -0.3633 0.8874 -0.5181 31 1 -0.3633 -0.8924 -0.5096 32 1 1.9869 2.1597 0.0004 33 1 5.6333 1.1319 -0.0059 34 1 4.8009 5.4819 -0.0294 35 1 7.4675 5.7390 0.8647 36 1 7.4706 5.7368 -0.9153 37 1 6.3787 7.5477 2.1197 38 1 5.4051 8.7752 1.2745 39 1 4.8320 7.0928 1.3653 40 1 8.3326 10.1484 -0.2553 41 1 4.5475 -2.4503 -0.5012 42 1 5.6075 -1.0205 -0.5091 43 1 7.7303 -3.6964 0.8685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594315085.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:34 Heat of formation + Delta-G solvation = -85.211568 kcal Electronic energy + Delta-G solvation = -28631.452614 eV Core-core repulsion = 24292.733345 eV Total energy + Delta-G solvation = -4338.719269 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.25957 -40.90064 -40.13503 -38.52684 -36.88285 -36.27225 -34.93244 -33.82846 -32.96506 -32.07992 -29.31199 -28.61248 -27.46389 -26.07025 -25.54427 -24.04565 -22.80757 -21.16942 -21.06044 -19.98193 -19.60222 -18.56911 -18.05129 -17.35820 -16.87878 -16.62827 -16.51771 -16.21288 -16.02188 -15.39685 -15.05770 -14.83611 -14.38278 -14.35436 -14.10402 -13.97379 -13.74941 -13.17815 -12.98346 -12.79102 -12.72730 -12.56865 -12.15170 -12.07966 -11.93876 -11.88909 -11.76351 -11.69066 -11.49258 -11.08978 -10.96507 -10.84525 -10.56549 -10.31906 -9.88624 -9.83039 -9.57667 -9.56736 -8.68691 -7.98990 -7.58477 -6.30503 -4.39331 1.18802 1.68358 1.89563 2.53131 2.60260 3.18608 3.22210 3.25837 3.26205 3.31890 3.53339 3.78032 3.89844 4.22395 4.26854 4.33267 4.44874 4.78248 5.02920 5.13653 5.14699 5.25962 5.28349 5.45061 5.52269 5.60523 5.84730 5.98773 5.99108 6.02309 6.06190 6.13222 6.27268 6.49511 6.80064 6.85881 7.01003 7.34391 7.36485 7.44956 7.50300 7.62918 7.77780 7.81012 8.05794 8.55157 8.68656 9.28291 10.76921 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010597 B = 0.002775 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.600238 B =10086.616047 C =12088.364948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.049 3.951 3 C -0.287 4.287 4 C 0.293 3.707 5 N -0.606 5.606 6 C 0.514 3.486 7 O -0.498 6.498 8 C 0.517 3.483 9 O -0.501 6.501 10 N -0.702 5.702 11 C 0.131 3.869 12 C -0.096 4.096 13 H 0.121 0.879 14 C -0.150 4.150 15 C 0.489 3.511 16 O -0.506 6.506 17 O -0.513 6.513 18 N -0.340 5.340 19 C 0.255 3.745 20 C -0.543 4.543 21 H 0.064 0.936 22 C 0.068 3.932 23 N -0.888 5.888 24 Si 0.907 3.093 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 N -0.277 5.277 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.163 0.837 33 H 0.429 0.571 34 H 0.414 0.586 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.414 0.586 41 H 0.059 0.941 42 H 0.046 0.954 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.476 24.118 -2.399 24.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.116 4.116 3 C -0.319 4.319 4 C 0.071 3.929 5 N -0.254 5.254 6 C 0.294 3.706 7 O -0.372 6.372 8 C 0.297 3.703 9 O -0.374 6.374 10 N -0.358 5.358 11 C 0.008 3.992 12 C -0.115 4.115 13 H 0.139 0.861 14 C -0.207 4.207 15 C 0.330 3.670 16 O -0.394 6.394 17 O -0.326 6.326 18 N -0.126 5.126 19 C 0.137 3.863 20 C -0.582 4.582 21 H 0.083 0.917 22 C -0.136 4.136 23 N -0.526 5.526 24 Si 0.734 3.266 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.199 1.199 28 N -0.102 5.102 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.180 0.820 33 H 0.268 0.732 34 H 0.251 0.749 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.273 0.727 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.115 22.270 -2.438 22.619 hybrid contribution 1.224 0.859 0.875 1.732 sum -1.892 23.129 -1.563 23.259 Atomic orbital electron populations 1.20027 0.87421 1.02424 1.02235 1.22023 0.96613 0.90900 1.02027 1.21273 0.88880 1.00538 1.21164 1.17966 0.87489 0.83512 1.03968 1.42288 1.09601 1.04833 1.68650 1.19805 0.89509 0.82464 0.78800 1.90694 1.25838 1.73859 1.46795 1.19777 0.89139 0.83168 0.78235 1.90864 1.26183 1.74055 1.46324 1.45533 1.10843 1.05072 1.74355 1.21268 0.86994 0.85865 1.05112 1.21147 0.94355 0.92813 1.03231 0.86115 1.21863 1.00943 1.03524 0.94399 1.23025 0.90630 0.81449 0.71928 1.90797 1.28320 1.75254 1.44980 1.84497 1.43409 1.19529 1.85130 1.49601 1.06594 1.01924 1.54478 1.19698 0.77708 0.89744 0.99104 1.21270 1.13589 1.32146 0.91168 0.91729 1.24933 0.95595 0.94818 0.98263 1.69902 1.19131 1.32296 1.31246 0.86392 0.78071 0.78519 0.83610 1.19890 1.20861 1.19906 1.77369 0.86095 1.21807 1.24961 0.91239 0.91087 0.91469 0.81976 0.73203 0.74906 0.89527 0.89451 0.91424 0.90514 0.90372 0.72715 0.92337 0.93591 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.87 10.44 36.01 0.38 -0.50 16 2 C 0.05 0.95 7.20 -82.47 -0.59 0.36 16 3 C -0.29 -5.58 9.58 -39.77 -0.38 -5.96 16 4 C 0.29 6.10 7.68 -152.86 -1.17 4.93 16 5 N -0.61 -11.03 5.40 -11.80 -0.06 -11.10 16 6 C 0.51 7.99 7.85 -11.65 -0.09 7.90 16 7 O -0.50 -7.83 13.60 5.47 0.07 -7.76 16 8 C 0.52 7.02 7.88 -11.65 -0.09 6.93 16 9 O -0.50 -8.31 16.47 5.49 0.09 -8.22 16 10 N -0.70 -6.60 5.28 -60.77 -0.32 -6.92 16 11 C 0.13 1.12 4.41 -4.04 -0.02 1.11 16 12 C -0.10 -0.54 2.86 -91.77 -0.26 -0.80 16 13 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 14 C -0.15 -0.69 9.00 37.16 0.33 -0.35 16 15 C 0.49 3.47 7.63 36.01 0.27 3.74 16 16 O -0.51 -5.49 16.68 -18.75 -0.31 -5.80 16 17 O -0.51 -2.38 13.33 -39.26 -0.52 -2.91 16 18 N -0.34 -7.95 3.62 -61.47 -0.22 -8.18 16 19 C 0.25 6.47 6.02 -5.19 -0.03 6.43 16 20 C -0.54 -14.85 9.39 -34.44 -0.32 -15.18 16 21 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 22 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 23 N -0.89 -24.90 13.29 55.43 0.74 -24.16 16 24 Si 0.91 21.20 29.54 -169.99 -5.02 16.18 16 25 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 28 N -0.28 -6.32 12.56 33.64 0.42 -5.90 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.16 2.92 5.83 -52.49 -0.31 2.62 16 33 H 0.43 7.93 7.46 -40.82 -0.30 7.63 16 34 H 0.41 3.01 7.12 -40.82 -0.29 2.72 16 35 H 0.09 0.85 8.14 -51.92 -0.42 0.43 16 36 H 0.09 0.85 7.95 -51.93 -0.41 0.44 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.29 8.11 -51.93 -0.42 -0.13 16 39 H 0.08 0.32 7.18 -51.93 -0.37 -0.05 16 40 H 0.41 0.38 9.10 45.56 0.41 0.79 16 41 H 0.06 1.58 8.14 -51.93 -0.42 1.16 16 42 H 0.05 1.15 7.52 -51.93 -0.39 0.76 16 43 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 379.88 15.07 5.72 5.72 Total: -1.00 -34.70 379.88 -6.08 -40.78 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -4.59 Total: 7.88 kcal Atomic # 6 Polarization: 12.44 SS G_CDS: -2.08 Total: 10.36 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.55 Total: -56.25 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.67 Total: -24.68 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.70 -6.08 -40.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594315085.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.427 kcal (2) G-P(sol) polarization free energy of solvation -34.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds