Wall clock time and date at job start Tue Mar 31 2020 21:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39696 * 125.76890 * 2 1 4 4 C 1.36213 * 107.86003 * 180.16466 * 3 2 1 5 5 N 1.39196 * 126.27405 * 179.84641 * 4 3 2 6 6 C 1.34777 * 119.99708 * 359.69181 * 5 4 3 7 7 O 1.21383 * 120.00397 * 359.97438 * 6 5 4 8 8 C 1.49313 * 119.99573 * 180.02562 * 6 5 4 9 9 O 1.21363 * 120.00015 * 359.97438 * 8 6 5 10 10 N 1.34777 * 119.99574 * 179.97438 * 8 6 5 11 11 C 1.46499 * 119.99665 * 179.72291 * 10 8 6 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 H 1.08998 * 109.46700 * 305.00136 * 12 11 10 14 14 C 1.53004 * 109.47137 * 65.00035 * 12 11 10 15 15 C 1.50699 * 109.47086 * 184.99976 * 12 11 10 16 16 O 1.20825 * 120.00436 * 0.02562 * 15 12 11 17 17 O 1.34229 * 119.99757 * 179.97438 * 15 12 11 18 18 N 1.35855 * 107.45334 * 359.58354 * 4 3 2 19 19 C 1.46503 * 126.09656 * 180.23958 * 18 4 3 20 20 C 1.50705 * 109.46708 * 90.00271 * 19 18 4 21 21 H 1.07998 * 120.00060 * 0.02562 * 20 19 18 22 22 C 1.37882 * 119.99685 * 179.97438 * 20 19 18 23 23 N 1.31514 * 119.99897 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99646 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46956 * 60.00376 * 24 22 20 26 26 H 1.48506 * 109.46801 * 179.97438 * 24 22 20 27 27 H 1.48490 * 109.47320 * 299.99740 * 24 22 20 28 28 N 1.30843 * 125.77348 * 179.69851 * 2 1 3 29 29 H 1.08995 * 109.47411 * 270.27747 * 1 2 3 30 30 H 1.08995 * 109.47276 * 30.27843 * 1 2 3 31 31 H 1.08999 * 109.46878 * 150.27470 * 1 2 3 32 32 H 1.08001 * 126.06933 * 0.02562 * 3 2 1 33 33 H 0.97000 * 120.00399 * 179.68727 * 5 4 3 34 34 H 0.97001 * 120.00485 * 0.02562 * 10 8 6 35 35 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 36 36 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 37 37 H 1.09003 * 109.46857 * 59.99834 * 14 12 11 38 38 H 1.08990 * 109.46949 * 180.02562 * 14 12 11 39 39 H 1.09000 * 109.46939 * 300.00085 * 14 12 11 40 40 H 0.96703 * 117.00091 * 179.97438 * 17 15 12 41 41 H 1.08996 * 109.47233 * 209.99893 * 19 18 4 42 42 H 1.09002 * 109.47263 * 330.00380 * 19 18 4 43 43 H 0.97002 * 119.99799 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3235 1.1335 0.0000 4 6 3.6197 0.7146 -0.0037 5 7 4.7484 1.5292 -0.0080 6 6 4.6117 2.8700 -0.0150 7 8 3.5044 3.3672 -0.0181 8 6 5.8225 3.7437 -0.0202 9 8 6.9296 3.2466 -0.0176 10 7 5.6858 5.0845 -0.0277 11 6 6.8737 5.9419 -0.0266 12 6 6.4431 7.4101 -0.0292 13 1 5.7767 7.5917 -0.8724 14 6 5.7122 7.7295 1.2765 15 6 7.6601 8.2903 -0.1519 16 8 8.7591 7.7943 -0.2299 17 8 7.5231 9.6254 -0.1756 18 7 3.6089 -0.6439 0.0034 19 6 4.7858 -1.5163 0.0076 20 6 5.1898 -1.8080 1.4299 21 1 4.6260 -1.3861 2.2487 22 6 6.2785 -2.6144 1.6857 23 7 6.9641 -3.1294 0.6885 24 14 6.7797 -2.9754 3.4486 25 1 5.6601 -3.6501 4.1532 26 1 7.9719 -3.8609 3.4529 27 1 7.1053 -1.7028 4.1411 28 7 2.2719 -1.0616 0.0056 29 1 -0.3634 0.0050 1.0276 30 1 -0.3633 0.8874 -0.5181 31 1 -0.3633 -0.8924 -0.5096 32 1 1.9869 2.1597 0.0004 33 1 5.6333 1.1319 -0.0059 34 1 4.8009 5.4819 -0.0294 35 1 7.4675 5.7390 0.8647 36 1 7.4706 5.7368 -0.9153 37 1 6.3787 7.5477 2.1197 38 1 5.4051 8.7752 1.2745 39 1 4.8320 7.0928 1.3653 40 1 8.3326 10.1484 -0.2553 41 1 4.5475 -2.4503 -0.5012 42 1 5.6075 -1.0205 -0.5091 43 1 7.7303 -3.6964 0.8685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594315085.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:33 Heat of formation + Delta-G solvation = -111.845160 kcal Electronic energy + Delta-G solvation = -28632.607533 eV Core-core repulsion = 24292.733345 eV Total energy + Delta-G solvation = -4339.874188 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.63791 -41.71119 -41.28133 -39.76059 -37.55472 -37.01090 -36.32064 -35.68744 -33.90893 -33.69097 -30.88461 -30.12875 -28.27861 -27.81728 -26.33982 -25.08453 -24.57698 -22.43272 -21.71521 -21.41148 -20.88655 -19.34523 -19.11752 -18.87641 -18.24586 -18.04457 -17.56547 -17.31866 -16.87088 -16.61654 -16.37205 -16.21367 -15.87816 -15.54500 -15.31685 -14.74983 -14.61751 -14.52704 -14.43654 -14.06341 -13.87355 -13.58854 -13.43465 -13.19794 -13.12958 -12.98470 -12.82642 -12.70112 -12.68428 -12.49519 -12.30115 -12.22762 -12.07325 -11.74558 -11.54955 -11.40450 -10.89444 -10.77869 -10.49137 -9.68082 -9.17281 -8.38270 -6.55940 -0.06197 0.74789 1.09129 1.14611 1.35703 1.37012 1.45708 1.68393 1.82661 2.06386 2.10824 2.31226 2.50859 2.92546 3.16999 3.32188 3.74140 3.80494 4.03851 4.14859 4.34878 4.50122 4.54199 4.60700 4.67521 4.70571 4.82472 4.83451 4.84674 4.92040 4.94447 5.00519 5.17981 5.21464 5.27533 5.48223 5.58929 5.73992 5.75774 5.94460 5.97183 6.15975 6.45008 6.58650 6.71985 6.94807 6.96793 7.15910 8.68364 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010597 B = 0.002775 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.600238 B =10086.616047 C =12088.364948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.059 3.941 3 C -0.288 4.288 4 C 0.287 3.713 5 N -0.616 5.616 6 C 0.519 3.481 7 O -0.494 6.494 8 C 0.523 3.477 9 O -0.535 6.535 10 N -0.674 5.674 11 C 0.130 3.870 12 C -0.088 4.088 13 H 0.150 0.850 14 C -0.148 4.148 15 C 0.495 3.505 16 O -0.551 6.551 17 O -0.504 6.504 18 N -0.367 5.367 19 C 0.272 3.728 20 C -0.557 4.557 21 H 0.050 0.950 22 C 0.024 3.976 23 N -0.915 5.915 24 Si 0.970 3.030 25 H -0.272 1.272 26 H -0.272 1.272 27 H -0.268 1.268 28 N -0.323 5.323 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.073 0.927 32 H 0.181 0.819 33 H 0.425 0.575 34 H 0.428 0.572 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.430 0.570 41 H 0.031 0.969 42 H 0.042 0.958 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.941 26.629 -1.692 27.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.106 4.106 3 C -0.320 4.320 4 C 0.066 3.934 5 N -0.263 5.263 6 C 0.301 3.699 7 O -0.367 6.367 8 C 0.302 3.698 9 O -0.412 6.412 10 N -0.329 5.329 11 C 0.007 3.993 12 C -0.107 4.107 13 H 0.167 0.833 14 C -0.205 4.205 15 C 0.338 3.662 16 O -0.442 6.442 17 O -0.318 6.318 18 N -0.153 5.153 19 C 0.153 3.847 20 C -0.596 4.596 21 H 0.069 0.931 22 C -0.177 4.177 23 N -0.553 5.553 24 Si 0.793 3.207 25 H -0.197 1.197 26 H -0.197 1.197 27 H -0.193 1.193 28 N -0.148 5.148 29 H 0.105 0.895 30 H 0.119 0.881 31 H 0.092 0.908 32 H 0.198 0.802 33 H 0.263 0.737 34 H 0.268 0.732 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.293 0.707 41 H 0.049 0.951 42 H 0.060 0.940 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.626 24.880 -1.739 25.366 hybrid contribution 1.594 0.264 0.607 1.726 sum -3.032 25.144 -1.131 25.351 Atomic orbital electron populations 1.20255 0.83505 1.04275 1.03874 1.22939 0.98895 0.89871 0.98919 1.21564 0.88192 1.01326 1.20906 1.18384 0.88914 0.82891 1.03243 1.42447 1.08758 1.05593 1.69534 1.20153 0.90287 0.81706 0.77791 1.90668 1.26056 1.73630 1.46364 1.19432 0.87723 0.84116 0.78488 1.90864 1.26974 1.74801 1.48549 1.45396 1.12096 1.03545 1.71862 1.21299 0.86283 0.87702 1.04000 1.21121 0.94239 0.90202 1.05106 0.83288 1.21884 1.00757 1.04666 0.93210 1.23216 0.90211 0.82137 0.70634 1.90795 1.30039 1.76106 1.47277 1.84457 1.44576 1.18435 1.84333 1.49352 1.06390 1.02672 1.56901 1.19213 0.78612 0.89036 0.97846 1.21394 1.13902 1.32611 0.91647 0.93146 1.25737 0.95367 0.94362 1.02262 1.69988 1.19497 1.32643 1.33150 0.85427 0.77919 0.78590 0.78723 1.19748 1.19689 1.19282 1.77330 0.86143 1.23825 1.27481 0.89537 0.88078 0.90784 0.80178 0.73714 0.73229 0.90814 0.90583 0.92317 0.89024 0.89583 0.70745 0.95111 0.94023 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.53 10.44 71.24 0.74 -0.79 16 2 C 0.06 2.23 7.20 43.06 0.31 2.54 16 3 C -0.29 -10.88 9.58 22.15 0.21 -10.67 16 4 C 0.29 12.10 7.68 131.25 1.01 13.10 16 5 N -0.62 -22.76 5.40 -309.59 -1.67 -24.43 16 6 C 0.52 15.78 7.85 87.23 0.68 16.46 16 7 O -0.49 -14.56 13.60 -3.35 -0.05 -14.61 16 8 C 0.52 13.91 7.88 87.23 0.69 14.60 16 9 O -0.54 -18.03 16.47 -3.29 -0.05 -18.09 16 10 N -0.67 -11.56 5.28 -464.54 -2.45 -14.01 16 11 C 0.13 2.10 4.41 86.38 0.38 2.48 16 12 C -0.09 -0.78 2.86 -11.54 -0.03 -0.81 16 13 H 0.15 0.54 8.14 -2.39 -0.02 0.52 16 14 C -0.15 -0.95 9.00 71.98 0.65 -0.30 16 15 C 0.49 6.24 7.63 71.24 0.54 6.78 16 16 O -0.55 -11.78 16.68 21.97 0.37 -11.42 16 17 O -0.50 -3.46 13.33 -51.41 -0.69 -4.15 16 18 N -0.37 -17.73 3.62 -348.38 -1.26 -18.99 16 19 C 0.27 14.47 6.02 85.63 0.52 14.99 16 20 C -0.56 -31.45 9.39 25.60 0.24 -31.21 16 21 H 0.05 2.93 7.81 -2.91 -0.02 2.90 16 22 C 0.02 1.35 5.46 84.66 0.46 1.81 16 23 N -0.92 -52.30 13.29 21.45 0.28 -52.02 16 24 Si 0.97 43.73 29.54 68.60 2.03 45.75 16 25 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 27 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 28 N -0.32 -14.97 12.56 -47.49 -0.60 -15.56 16 29 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.10 1.95 8.14 -2.39 -0.02 1.94 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.18 6.05 5.83 -2.91 -0.02 6.04 16 33 H 0.42 16.39 7.46 -92.71 -0.69 15.70 16 34 H 0.43 5.01 7.12 -92.71 -0.66 4.35 16 35 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.08 1.47 7.95 -2.39 -0.02 1.45 16 37 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.09 0.37 8.11 -2.39 -0.02 0.35 16 39 H 0.09 0.44 7.18 -2.39 -0.02 0.42 16 40 H 0.43 -0.12 9.10 -74.06 -0.67 -0.79 16 41 H 0.03 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.04 2.21 7.52 -2.39 -0.02 2.19 16 43 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -77.10 379.88 1.39 -75.72 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: -0.92 Total: 22.83 kcal Atomic # 6 Polarization: 22.57 SS G_CDS: 6.40 Total: 28.97 kcal Atomic # 7 Polarization: -119.32 SS G_CDS: -5.70 Total: -125.01 kcal Atomic # 8 Polarization: -47.84 SS G_CDS: -0.42 Total: -48.26 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -77.10 1.39 -75.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594315085.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.130 kcal (2) G-P(sol) polarization free energy of solvation -77.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds