Wall clock time and date at job start Tue Mar 31 2020 21:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37837 * 125.89704 * 2 1 4 4 C 1.47118 * 127.02466 * 359.97438 * 3 2 1 5 5 O 1.21552 * 119.99694 * 359.97438 * 4 3 2 6 6 O 1.34784 * 120.00116 * 179.71268 * 4 3 2 7 7 C 1.46736 * 105.95607 * 179.73501 * 3 2 1 8 8 C 1.34432 * 106.37306 * 0.25623 * 7 3 2 9 9 C 1.50700 * 125.46060 * 180.02562 * 8 7 3 10 10 N 1.46500 * 109.47422 * 94.97697 * 9 8 7 11 11 C 1.34774 * 119.99944 * 180.02562 * 10 9 8 12 12 O 1.21581 * 120.00232 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99753 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99783 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.46816 * 180.02562 * 14 13 11 16 16 O 1.21287 * 120.00299 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99771 * 179.97438 * 15 14 13 18 18 C 1.37102 * 119.99922 * 179.97438 * 17 15 14 19 19 H 1.07995 * 119.99793 * 0.02562 * 18 17 15 20 20 C 1.38954 * 119.99676 * 180.02562 * 18 17 15 21 21 N 1.31403 * 120.00319 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99442 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47596 * 60.00378 * 22 20 18 24 24 H 1.48499 * 109.46997 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47222 * 299.99894 * 22 20 18 26 26 N 1.34624 * 125.89863 * 180.18512 * 2 1 3 27 27 C 1.46507 * 124.80964 * 0.02562 * 26 2 1 28 28 H 1.09006 * 109.46942 * 90.03015 * 1 2 3 29 29 H 1.09001 * 109.47399 * 210.02486 * 1 2 3 30 30 H 1.08996 * 109.47538 * 330.02503 * 1 2 3 31 31 H 0.96706 * 116.99765 * 179.97438 * 6 4 3 32 32 H 1.07998 * 126.81810 * 180.29613 * 7 3 2 33 33 H 1.09002 * 109.47092 * 214.97897 * 9 8 7 34 34 H 1.08998 * 109.46933 * 334.97511 * 9 8 7 35 35 H 0.96996 * 119.99417 * 0.02562 * 10 9 8 36 36 H 0.97004 * 119.99995 * 0.02562 * 13 11 10 37 37 H 1.09002 * 109.47432 * 299.99637 * 14 13 11 38 38 H 1.08993 * 109.47550 * 60.00336 * 14 13 11 39 39 H 0.97006 * 120.00184 * 0.02562 * 17 15 14 40 40 H 0.96999 * 120.00166 * 180.02562 * 21 20 18 41 41 H 1.09003 * 109.46823 * 270.31608 * 27 26 2 42 42 H 1.08997 * 109.47042 * 30.31234 * 27 26 2 43 43 H 1.09002 * 109.46991 * 150.31175 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3152 1.1166 0.0000 4 6 1.8831 2.5229 -0.0005 5 8 0.6984 2.7946 -0.0015 6 8 2.8010 3.5099 0.0054 7 6 3.6945 0.6161 0.0065 8 6 3.6109 -0.7256 0.0041 9 6 4.7816 -1.6745 0.0094 10 7 5.0777 -2.0772 1.3865 11 6 6.0925 -2.9281 1.6364 12 8 6.7620 -3.3620 0.7189 13 7 6.3652 -3.2981 2.9034 14 6 7.4686 -4.2227 3.1750 15 6 7.5607 -4.4729 4.6583 16 8 6.7810 -3.9325 5.4140 17 7 8.5088 -5.2979 5.1449 18 6 8.5928 -5.5252 6.4944 19 1 7.8991 -5.0433 7.1673 20 6 9.5707 -6.3754 6.9961 21 7 10.4151 -6.9612 6.1773 22 14 9.6847 -6.6855 8.8346 23 1 8.4117 -7.2791 9.3165 24 1 10.8037 -7.6222 9.1101 25 1 9.9300 -5.4014 9.5389 26 7 2.2963 -1.0905 -0.0035 27 6 1.8123 -2.4733 -0.0085 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3634 0.8902 0.5134 31 1 2.4689 4.4182 0.0044 32 1 4.5978 1.2082 0.0128 33 1 4.5370 -2.5566 -0.5825 34 1 5.6526 -1.1793 -0.4196 35 1 4.5433 -1.7313 2.1184 36 1 5.8308 -2.9523 3.6353 37 1 7.2884 -5.1654 2.6585 38 1 8.4030 -3.7873 2.8211 39 1 9.1322 -5.7304 4.5405 40 1 11.0975 -7.5550 6.5275 41 1 1.6866 -2.8179 1.0179 42 1 0.8551 -2.5213 -0.5277 43 1 2.5351 -3.1094 -0.5195 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599989595.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:18 Heat of formation + Delta-G solvation = -112.429827 kcal Electronic energy + Delta-G solvation = -27870.007949 eV Core-core repulsion = 23530.108408 eV Total energy + Delta-G solvation = -4339.899541 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.97434 -39.96281 -39.73588 -38.22659 -36.22403 -35.12333 -34.41100 -33.67921 -33.32445 -32.08861 -31.38636 -28.89749 -27.55722 -27.11536 -25.13333 -24.26444 -23.00542 -20.97381 -20.80541 -19.61498 -19.15890 -18.52190 -18.18110 -17.99647 -17.02449 -16.43265 -15.95156 -15.82219 -15.60549 -15.55130 -15.40522 -14.68524 -14.54305 -14.37745 -14.20315 -13.92775 -13.68857 -13.55998 -13.47694 -13.27947 -12.92135 -12.81033 -12.69995 -12.39253 -12.20160 -11.97968 -11.83604 -11.72235 -11.64270 -11.11748 -10.74467 -10.52061 -10.33583 -10.17040 -9.64111 -9.27984 -9.10428 -8.67032 -8.64854 -8.58055 -8.11597 -6.52706 -3.94858 1.12170 1.71906 2.21103 2.85381 3.04435 3.08912 3.12534 3.20629 3.24683 3.32559 3.73436 4.07909 4.13611 4.25379 4.33961 4.43611 4.62689 4.67983 4.87740 4.94988 4.98441 5.13445 5.15786 5.18054 5.23916 5.38795 5.46818 5.55341 5.84048 5.88275 5.97854 6.05980 6.27109 6.32312 6.35958 6.61628 6.68909 6.71393 7.01273 7.44462 7.79095 7.90685 8.15893 8.43603 8.71526 9.03153 9.37889 9.85779 10.64033 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020534 B = 0.001772 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.232542 B =15800.361722 C =16068.845075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.129 3.871 3 C -0.238 4.238 4 C 0.561 3.439 5 O -0.533 6.533 6 O -0.512 6.512 7 C -0.111 4.111 8 C -0.014 4.014 9 C 0.213 3.787 10 N -0.749 5.749 11 C 0.706 3.294 12 O -0.597 6.597 13 N -0.723 5.723 14 C 0.129 3.871 15 C 0.428 3.572 16 O -0.598 6.598 17 N -0.549 5.549 18 C -0.306 4.306 19 H 0.105 0.895 20 C 0.026 3.974 21 N -0.894 5.894 22 Si 0.934 3.066 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.272 1.272 26 N -0.427 5.427 27 C 0.060 3.940 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.410 0.590 32 H 0.156 0.844 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.398 0.602 36 H 0.407 0.593 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.396 0.604 40 H 0.275 0.725 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.955 12.714 -15.301 26.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.009 3.991 3 C -0.246 4.246 4 C 0.408 3.592 5 O -0.425 6.425 6 O -0.323 6.323 7 C -0.135 4.135 8 C -0.121 4.121 9 C 0.088 3.912 10 N -0.406 5.406 11 C 0.405 3.595 12 O -0.476 6.476 13 N -0.380 5.380 14 C 0.000 4.000 15 C 0.213 3.787 16 O -0.485 6.485 17 N -0.183 5.183 18 C -0.435 4.435 19 H 0.123 0.877 20 C -0.177 4.177 21 N -0.534 5.534 22 Si 0.761 3.239 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.198 1.198 26 N -0.102 5.102 27 C -0.081 4.081 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.120 0.880 31 H 0.268 0.732 32 H 0.173 0.827 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.232 0.768 36 H 0.244 0.756 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.230 0.770 40 H 0.085 0.915 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.867 11.784 -15.590 25.815 hybrid contribution -0.126 0.397 1.212 1.281 sum -16.993 12.181 -14.378 25.374 Atomic orbital electron populations 1.20642 0.86570 1.04610 1.03746 1.20588 0.93678 0.84824 0.99990 1.19220 0.93680 0.88667 1.22983 1.19753 0.82764 0.85333 0.71376 1.90851 1.18417 1.84652 1.48570 1.84599 1.42195 1.19462 1.86074 1.21959 0.96058 0.92137 1.03340 1.20193 0.83896 0.94653 1.13348 1.19429 0.92928 0.95565 0.83228 1.45152 1.35780 1.50828 1.08827 1.15815 0.80744 0.79448 0.83445 1.90916 1.52621 1.60184 1.43875 1.44779 1.36310 1.50189 1.06753 1.20791 0.89963 0.93717 0.95497 1.19761 0.85106 0.84925 0.88876 1.90491 1.44617 1.54324 1.59086 1.41784 1.28279 1.39540 1.08727 1.19675 1.15377 1.25920 0.82550 0.87748 1.25327 0.95536 0.96221 1.00634 1.69601 1.18204 1.29993 1.35629 0.85869 0.77918 0.78399 0.81749 1.19799 1.20852 1.19773 1.43516 1.05432 1.06478 1.54742 1.22238 1.01896 0.79556 1.04369 0.89994 0.91168 0.88049 0.73188 0.82682 0.90886 0.89027 0.76786 0.75569 0.90013 0.89937 0.77001 0.91521 0.89930 0.89256 0.88863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.65 9.28 36.00 0.33 -0.31 16 2 C 0.13 1.12 6.93 -81.52 -0.56 0.55 16 3 C -0.24 -2.41 6.33 -103.01 -0.65 -3.06 16 4 C 0.56 5.83 8.32 34.33 0.29 6.11 16 5 O -0.53 -6.46 15.66 -19.31 -0.30 -6.76 16 6 O -0.51 -4.12 13.33 -40.72 -0.54 -4.66 16 7 C -0.11 -1.05 10.89 -37.49 -0.41 -1.45 16 8 C -0.01 -0.12 6.21 -81.89 -0.51 -0.63 16 9 C 0.21 2.01 5.77 -5.19 -0.03 1.98 16 10 N -0.75 -8.26 5.55 -66.42 -0.37 -8.63 16 11 C 0.71 10.72 8.57 -86.92 -0.74 9.98 16 12 O -0.60 -10.99 16.34 5.29 0.09 -10.90 16 13 N -0.72 -11.66 5.53 -66.42 -0.37 -12.03 16 14 C 0.13 2.33 6.15 -5.19 -0.03 2.29 16 15 C 0.43 9.65 7.85 -10.99 -0.09 9.56 16 16 O -0.60 -15.08 15.24 5.55 0.08 -15.00 16 17 N -0.55 -13.43 5.29 -10.96 -0.06 -13.49 16 18 C -0.31 -8.23 9.68 -14.93 -0.14 -8.37 16 19 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 20 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 21 N -0.89 -23.66 13.05 55.50 0.72 -22.94 16 22 Si 0.93 20.38 29.55 -169.99 -5.02 15.35 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 25 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 26 N -0.43 -3.28 3.08 -115.00 -0.35 -3.63 16 27 C 0.06 0.30 10.39 59.85 0.62 0.92 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.32 7.60 -51.93 -0.39 -0.07 16 30 H 0.10 0.82 6.51 -51.93 -0.34 0.48 16 31 H 0.41 1.41 9.11 45.56 0.42 1.83 16 32 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.07 0.67 7.09 -51.93 -0.37 0.31 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.40 3.85 8.48 -40.82 -0.35 3.51 16 36 H 0.41 6.44 7.45 -40.82 -0.30 6.13 16 37 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 38 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.40 9.32 7.90 -40.82 -0.32 9.00 16 40 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 41 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 0.27 7.51 -51.93 -0.39 -0.12 16 43 H 0.09 0.44 6.98 -51.93 -0.36 0.07 16 LS Contribution 378.69 15.07 5.71 5.71 Total: -1.00 -34.98 378.69 -6.90 -41.88 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -4.46 Total: 16.96 kcal Atomic # 6 Polarization: 20.17 SS G_CDS: -2.02 Total: 18.14 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: -0.42 Total: -60.71 kcal Atomic # 8 Polarization: -36.65 SS G_CDS: -0.67 Total: -37.33 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.98 -6.90 -41.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599989595.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.554 kcal (2) G-P(sol) polarization free energy of solvation -34.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds