Wall clock time and date at job start Tue Mar 31 2020 20:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00260 * 2 1 4 4 H 1.48501 * 109.47495 * 239.99553 * 3 2 1 5 5 H 1.48502 * 109.47196 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47322 * 119.99667 * 3 2 1 7 7 C 1.37879 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00212 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99858 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47240 * 179.97438 * 9 7 2 11 11 C 1.34969 * 125.97999 * 125.00481 * 10 9 7 12 12 C 1.35241 * 107.86358 * 180.02562 * 11 10 9 13 13 C 1.40410 * 107.86515 * 359.97438 * 12 11 10 14 14 N 1.40193 * 125.97260 * 180.02562 * 13 12 11 15 15 C 1.34778 * 119.99695 * 0.02562 * 14 13 12 16 16 O 1.21592 * 120.00538 * 5.21225 * 15 14 13 17 17 N 1.34784 * 119.99756 * 185.20914 * 15 14 13 18 18 C 1.46924 * 120.62739 * 174.96829 * 17 15 14 19 19 C 1.53188 * 108.77296 * 233.62742 * 18 17 15 20 20 C 1.53037 * 109.31762 * 305.36591 * 19 18 17 21 21 O 1.42896 * 109.46162 * 301.35974 * 20 19 18 22 22 C 1.50701 * 109.46330 * 181.38363 * 20 19 18 23 23 O 1.20829 * 120.00128 * 335.00622 * 22 20 19 24 24 O 1.34233 * 119.99853 * 155.27624 * 22 20 19 25 25 C 1.53044 * 109.53579 * 61.36713 * 20 19 18 26 26 C 1.46925 * 120.62833 * 354.98906 * 17 15 14 27 27 N 1.31213 * 108.05224 * 0.26950 * 13 12 11 28 28 H 0.97004 * 119.99718 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.47424 * 60.00230 * 9 7 2 30 30 H 1.08998 * 109.47577 * 300.00013 * 9 7 2 31 31 H 1.07999 * 126.06702 * 359.97109 * 11 10 9 32 32 H 1.07994 * 126.06857 * 179.97438 * 12 11 10 33 33 H 0.96994 * 120.00053 * 180.02562 * 14 13 12 34 34 H 1.09006 * 109.58394 * 113.84430 * 18 17 15 35 35 H 1.08996 * 109.59193 * 353.42193 * 18 17 15 36 36 H 1.09005 * 109.49915 * 185.41361 * 19 18 17 37 37 H 1.08998 * 109.52293 * 65.34080 * 19 18 17 38 38 H 0.96702 * 114.00011 * 180.02562 * 21 20 19 39 39 H 0.96702 * 116.99577 * 179.72407 * 24 22 20 40 40 H 1.08999 * 109.49649 * 58.58526 * 25 20 19 41 41 H 1.08998 * 109.50230 * 178.68605 * 25 20 19 42 42 H 1.08997 * 109.58612 * 246.15723 * 26 17 15 43 43 H 1.08995 * 109.58901 * 6.58584 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.2419 -4.6225 0.8952 12 6 3.2608 -5.4425 0.5510 13 6 3.8689 -4.9146 -0.5992 14 7 4.9650 -5.4654 -1.2778 15 6 5.5292 -6.6057 -0.8329 16 8 5.0310 -7.2074 0.0989 17 7 6.6458 -7.0791 -1.4209 18 6 7.3345 -8.2586 -0.8793 19 6 8.8060 -7.9047 -0.6423 20 6 9.4118 -7.3636 -1.9393 21 8 9.2892 -8.3472 -2.9686 22 6 10.8684 -7.0462 -1.7190 23 8 11.2702 -6.7927 -0.6080 24 8 11.7185 -7.0397 -2.7579 25 6 8.6707 -6.0919 -2.3588 26 6 7.1976 -6.4253 -2.6154 27 7 3.2353 -3.8127 -0.9248 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8898 30 1 0.6239 -2.5567 0.8902 31 1 1.5779 -4.7522 1.7370 32 1 3.5547 -6.3434 1.0690 33 1 5.3172 -5.0260 -2.0675 34 1 7.2666 -9.0806 -1.5920 35 1 6.8724 -8.5507 0.0636 36 1 9.3493 -8.7971 -0.3316 37 1 8.8771 -7.1458 0.1369 38 1 9.6535 -8.0719 -3.8211 39 1 12.6423 -6.8264 -2.5678 40 1 8.7427 -5.3499 -1.5636 41 1 9.1176 -5.6941 -3.2699 42 1 7.1185 -7.0978 -3.4695 43 1 6.6452 -5.5077 -2.8178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601069204.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:56 Heat of formation + Delta-G solvation = -68.936490 kcal Electronic energy + Delta-G solvation = -29174.739917 eV Core-core repulsion = 24836.726389 eV Total energy + Delta-G solvation = -4338.013529 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.50561 -40.73503 -39.86725 -38.40792 -36.79054 -35.82225 -34.86829 -33.39432 -32.19761 -31.65828 -30.70125 -29.26744 -27.12740 -26.37616 -24.12577 -23.49590 -22.84083 -21.57313 -20.74550 -20.11256 -19.34121 -18.73495 -18.25990 -18.07893 -16.72600 -16.56007 -16.45588 -15.94782 -15.80008 -15.68833 -15.15033 -14.71859 -14.52975 -14.34888 -14.22962 -14.03123 -13.73437 -13.35586 -12.98282 -12.79553 -12.58668 -12.35705 -12.23493 -12.12466 -12.09892 -11.80337 -11.77367 -11.65948 -11.06944 -11.05249 -10.85835 -10.52881 -10.45121 -10.24758 -10.07200 -9.66609 -9.49891 -8.94953 -8.62220 -8.09175 -7.40252 -6.23542 -4.28596 1.54861 2.22519 2.34403 2.65834 3.09600 3.25507 3.28830 3.31410 3.36086 3.54850 3.82424 3.89220 3.94178 4.09792 4.33016 4.40811 4.59792 4.75439 4.88516 4.92683 5.07129 5.11522 5.19040 5.30486 5.43492 5.48047 5.61559 5.78026 5.82063 5.91497 6.09546 6.32217 6.55336 6.60452 6.82810 6.85687 6.97091 7.09482 7.28303 7.49273 7.69473 7.78961 7.94003 8.07858 8.53844 8.66808 8.81328 9.36826 10.85109 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016344 B = 0.002365 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.714802 B =11835.905858 C =12953.390666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.068 0.932 9 C 0.259 3.741 10 N -0.321 5.321 11 C 0.052 3.948 12 C -0.286 4.286 13 C 0.274 3.726 14 N -0.644 5.644 15 C 0.718 3.282 16 O -0.563 6.563 17 N -0.629 5.629 18 C 0.139 3.861 19 C -0.115 4.115 20 C 0.158 3.842 21 O -0.535 6.535 22 C 0.456 3.544 23 O -0.501 6.501 24 O -0.516 6.516 25 C -0.162 4.162 26 C 0.119 3.881 27 N -0.308 5.308 28 H 0.268 0.732 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.168 0.832 32 H 0.160 0.840 33 H 0.404 0.596 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.388 0.612 39 H 0.413 0.587 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.489 -16.430 -7.496 27.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.086 0.914 9 C 0.142 3.858 10 N -0.102 5.102 11 C -0.098 4.098 12 C -0.317 4.317 13 C 0.020 3.980 14 N -0.296 5.296 15 C 0.419 3.581 16 O -0.438 6.438 17 N -0.367 5.367 18 C 0.016 3.984 19 C -0.153 4.153 20 C 0.115 3.885 21 O -0.342 6.342 22 C 0.297 3.703 23 O -0.388 6.388 24 O -0.329 6.329 25 C -0.201 4.201 26 C -0.005 4.005 27 N -0.139 5.139 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.185 0.815 32 H 0.178 0.822 33 H 0.242 0.758 34 H 0.098 0.902 35 H 0.122 0.878 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.238 0.762 39 H 0.273 0.727 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.102 0.898 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 19.213 -16.031 -6.914 25.960 hybrid contribution 1.738 1.182 -0.249 2.116 sum 20.950 -14.848 -7.163 26.659 Atomic orbital electron populations 1.69909 1.06032 1.27709 1.49722 1.24942 0.94982 0.99518 0.94637 0.86389 0.79378 0.81830 0.78895 1.19974 1.21055 1.20052 1.21221 0.93948 0.89419 1.52100 0.91378 1.19726 0.85604 0.81273 0.99239 1.49054 1.23044 1.19764 1.18382 1.22552 1.00307 0.90265 0.96723 1.21496 1.02105 1.06439 1.01673 1.18798 0.90794 0.94031 0.94329 1.41581 1.31557 1.25037 1.31428 1.15502 0.80212 0.80283 0.82104 1.90866 1.63205 1.59195 1.30491 1.47220 1.26842 1.32214 1.30462 1.21397 0.89274 0.86364 1.01350 1.21959 0.96540 1.03448 0.93341 1.21078 0.85289 0.90432 0.91678 1.86626 1.83675 1.41578 1.22301 1.24570 0.90233 0.73077 0.82451 1.90766 1.78461 1.44067 1.25477 1.84480 1.24933 1.82659 1.40807 1.22653 0.96766 0.96551 1.04104 1.21539 0.92168 0.98359 0.88426 1.77311 1.03769 1.16224 1.16607 0.92282 0.93766 0.92544 0.81518 0.82227 0.75808 0.90248 0.87821 0.89126 0.88570 0.76239 0.72747 0.89164 0.88963 0.89769 0.89534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.31 13.29 55.43 0.74 -24.57 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.91 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.53 -14.68 9.23 -34.44 -0.32 -15.00 16 8 H 0.07 1.95 7.81 -52.48 -0.41 1.54 16 9 C 0.26 6.59 6.26 -5.20 -0.03 6.56 16 10 N -0.32 -7.48 3.67 -62.56 -0.23 -7.71 16 11 C 0.05 1.04 11.44 -17.24 -0.20 0.84 16 12 C -0.29 -5.74 9.61 -39.83 -0.38 -6.12 16 13 C 0.27 5.54 8.11 -154.36 -1.25 4.29 16 14 N -0.64 -10.07 5.36 -15.50 -0.08 -10.15 16 15 C 0.72 10.64 8.26 -86.91 -0.72 9.92 16 16 O -0.56 -10.09 12.93 5.29 0.07 -10.02 16 17 N -0.63 -6.55 2.97 -178.50 -0.53 -7.08 16 18 C 0.14 1.27 6.18 -3.71 -0.02 1.25 16 19 C -0.11 -0.93 4.62 -26.61 -0.12 -1.05 16 20 C 0.16 1.06 0.94 -91.73 -0.09 0.97 16 21 O -0.54 -2.98 11.63 -49.03 -0.57 -3.55 16 22 C 0.46 3.44 7.20 36.01 0.26 3.70 16 23 O -0.50 -5.52 16.88 -18.75 -0.32 -5.84 16 24 O -0.52 -2.36 12.86 -44.42 -0.57 -2.93 16 25 C -0.16 -0.97 5.07 -26.60 -0.13 -1.10 16 26 C 0.12 0.83 6.19 -3.71 -0.02 0.81 16 27 N -0.31 -7.08 12.42 31.44 0.39 -6.69 16 28 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.04 1.18 8.14 -51.92 -0.42 0.76 16 30 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 31 H 0.17 2.74 8.06 -52.49 -0.42 2.32 16 32 H 0.16 3.14 5.93 -52.49 -0.31 2.83 16 33 H 0.40 5.15 6.28 -40.82 -0.26 4.89 16 34 H 0.08 0.66 7.81 -51.93 -0.41 0.25 16 35 H 0.10 1.09 7.03 -51.93 -0.37 0.72 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.10 0.91 7.92 -51.93 -0.41 0.49 16 38 H 0.39 0.92 8.63 45.56 0.39 1.31 16 39 H 0.41 0.46 9.10 45.56 0.41 0.87 16 40 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.08 0.47 7.81 -51.93 -0.41 0.07 16 43 H 0.09 0.57 5.57 -51.93 -0.29 0.29 16 LS Contribution 362.32 15.07 5.46 5.46 Total: -1.00 -36.18 362.32 -7.51 -43.68 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -3.71 Total: 6.45 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: -3.13 Total: 6.67 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: 0.28 Total: -56.20 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: -1.39 Total: -22.34 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.18 -7.51 -43.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069204.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.253 kcal (2) G-P(sol) polarization free energy of solvation -36.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds