Wall clock time and date at job start Tue Mar 31 2020 20:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86796 * 120.00260 * 2 1 4 4 H 1.48501 * 109.47495 * 239.99553 * 3 2 1 5 5 H 1.48502 * 109.47196 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47322 * 119.99667 * 3 2 1 7 7 C 1.37879 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00212 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99858 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47240 * 179.97438 * 9 7 2 11 11 C 1.34969 * 125.97999 * 125.00481 * 10 9 7 12 12 C 1.35241 * 107.86358 * 180.02562 * 11 10 9 13 13 C 1.40410 * 107.86515 * 359.97438 * 12 11 10 14 14 N 1.40193 * 125.97260 * 180.02562 * 13 12 11 15 15 C 1.34778 * 119.99695 * 0.02562 * 14 13 12 16 16 O 1.21592 * 120.00538 * 5.21225 * 15 14 13 17 17 N 1.34784 * 119.99756 * 185.20914 * 15 14 13 18 18 C 1.46924 * 120.62739 * 174.96829 * 17 15 14 19 19 C 1.53188 * 108.77296 * 233.62742 * 18 17 15 20 20 C 1.53037 * 109.31762 * 305.36591 * 19 18 17 21 21 O 1.42896 * 109.46162 * 301.35974 * 20 19 18 22 22 C 1.50701 * 109.46330 * 181.38363 * 20 19 18 23 23 O 1.20829 * 120.00128 * 335.00622 * 22 20 19 24 24 O 1.34233 * 119.99853 * 155.27624 * 22 20 19 25 25 C 1.53044 * 109.53579 * 61.36713 * 20 19 18 26 26 C 1.46925 * 120.62833 * 354.98906 * 17 15 14 27 27 N 1.31213 * 108.05224 * 0.26950 * 13 12 11 28 28 H 0.97004 * 119.99718 * 0.02562 * 1 2 3 29 29 H 1.09008 * 109.47424 * 60.00230 * 9 7 2 30 30 H 1.08998 * 109.47577 * 300.00013 * 9 7 2 31 31 H 1.07999 * 126.06702 * 359.97109 * 11 10 9 32 32 H 1.07994 * 126.06857 * 179.97438 * 12 11 10 33 33 H 0.96994 * 120.00053 * 180.02562 * 14 13 12 34 34 H 1.09006 * 109.58394 * 113.84430 * 18 17 15 35 35 H 1.08996 * 109.59193 * 353.42193 * 18 17 15 36 36 H 1.09005 * 109.49915 * 185.41361 * 19 18 17 37 37 H 1.08998 * 109.52293 * 65.34080 * 19 18 17 38 38 H 0.96702 * 114.00011 * 180.02562 * 21 20 19 39 39 H 0.96702 * 116.99577 * 179.72407 * 24 22 20 40 40 H 1.08999 * 109.49649 * 58.58526 * 25 20 19 41 41 H 1.08998 * 109.50230 * 178.68605 * 25 20 19 42 42 H 1.08997 * 109.58612 * 246.15723 * 26 17 15 43 43 H 1.08995 * 109.58901 * 6.58584 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.2419 -4.6225 0.8952 12 6 3.2608 -5.4425 0.5510 13 6 3.8689 -4.9146 -0.5992 14 7 4.9650 -5.4654 -1.2778 15 6 5.5292 -6.6057 -0.8329 16 8 5.0310 -7.2074 0.0989 17 7 6.6458 -7.0791 -1.4209 18 6 7.3345 -8.2586 -0.8793 19 6 8.8060 -7.9047 -0.6423 20 6 9.4118 -7.3636 -1.9393 21 8 9.2892 -8.3472 -2.9686 22 6 10.8684 -7.0462 -1.7190 23 8 11.2702 -6.7927 -0.6080 24 8 11.7185 -7.0397 -2.7579 25 6 8.6707 -6.0919 -2.3588 26 6 7.1976 -6.4253 -2.6154 27 7 3.2353 -3.8127 -0.9248 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8898 30 1 0.6239 -2.5567 0.8902 31 1 1.5779 -4.7522 1.7370 32 1 3.5547 -6.3434 1.0690 33 1 5.3172 -5.0260 -2.0675 34 1 7.2666 -9.0806 -1.5920 35 1 6.8724 -8.5507 0.0636 36 1 9.3493 -8.7971 -0.3316 37 1 8.8771 -7.1458 0.1369 38 1 9.6535 -8.0719 -3.8211 39 1 12.6423 -6.8264 -2.5678 40 1 8.7427 -5.3499 -1.5636 41 1 9.1176 -5.6941 -3.2699 42 1 7.1185 -7.0978 -3.4695 43 1 6.6452 -5.5077 -2.8178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601069204.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:55 Heat of formation + Delta-G solvation = -96.440491 kcal Electronic energy + Delta-G solvation = -29175.932580 eV Core-core repulsion = 24836.726389 eV Total energy + Delta-G solvation = -4339.206192 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.38384 -41.91551 -41.02001 -39.16721 -37.32322 -36.57097 -36.29226 -35.28815 -33.22156 -32.43003 -32.11816 -30.90103 -28.64641 -27.49411 -25.20891 -24.57665 -23.99777 -22.64509 -22.05268 -21.26174 -20.45667 -19.29900 -19.28392 -18.67167 -18.64731 -18.11749 -17.24854 -17.10922 -16.79924 -16.53544 -16.29071 -15.99597 -15.69381 -15.52442 -15.18460 -14.93086 -14.78683 -14.47359 -14.23697 -14.02861 -13.85888 -13.64854 -13.45024 -13.19385 -12.95596 -12.76274 -12.69535 -12.66482 -12.43490 -12.31960 -12.26764 -12.07220 -11.67208 -11.61287 -11.39490 -11.13390 -10.99781 -10.70783 -9.90014 -9.67792 -9.02845 -8.31366 -6.45584 0.98087 1.07584 1.09746 1.39259 1.41075 1.49914 1.67903 1.85198 2.02541 2.36063 2.39583 2.79479 3.00215 3.09215 3.35987 3.42239 3.84797 3.95413 4.02666 4.17004 4.24140 4.27846 4.38039 4.51095 4.60704 4.71201 4.75565 4.85176 4.92063 4.92999 4.96268 5.03633 5.11606 5.17750 5.48673 5.49809 5.57330 5.69618 5.85134 5.97264 6.30383 6.58142 6.59802 6.68191 6.87010 7.11262 7.24200 7.36570 8.75905 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016344 B = 0.002365 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.714802 B =11835.905858 C =12953.390666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.018 3.982 3 Si 0.971 3.029 4 H -0.272 1.272 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.548 4.548 8 H 0.053 0.947 9 C 0.273 3.727 10 N -0.345 5.345 11 C 0.057 3.943 12 C -0.293 4.293 13 C 0.284 3.716 14 N -0.637 5.637 15 C 0.714 3.286 16 O -0.598 6.598 17 N -0.618 5.618 18 C 0.141 3.859 19 C -0.112 4.112 20 C 0.164 3.836 21 O -0.536 6.536 22 C 0.463 3.537 23 O -0.543 6.543 24 O -0.503 6.503 25 C -0.156 4.156 26 C 0.112 3.888 27 N -0.346 5.346 28 H 0.272 0.728 29 H 0.022 0.978 30 H 0.058 0.942 31 H 0.200 0.800 32 H 0.166 0.834 33 H 0.418 0.582 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.405 0.595 39 H 0.430 0.570 40 H 0.074 0.926 41 H 0.124 0.876 42 H 0.109 0.891 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.314 -16.659 -8.831 29.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.182 4.182 3 Si 0.795 3.205 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.586 4.586 8 H 0.071 0.929 9 C 0.154 3.846 10 N -0.127 5.127 11 C -0.092 4.092 12 C -0.324 4.324 13 C 0.028 3.972 14 N -0.291 5.291 15 C 0.415 3.585 16 O -0.475 6.475 17 N -0.355 5.355 18 C 0.019 3.981 19 C -0.151 4.151 20 C 0.121 3.879 21 O -0.346 6.346 22 C 0.305 3.695 23 O -0.433 6.433 24 O -0.317 6.317 25 C -0.195 4.195 26 C -0.010 4.010 27 N -0.177 5.177 28 H 0.081 0.919 29 H 0.040 0.960 30 H 0.076 0.924 31 H 0.217 0.783 32 H 0.183 0.817 33 H 0.258 0.742 34 H 0.113 0.887 35 H 0.104 0.896 36 H 0.114 0.886 37 H 0.096 0.904 38 H 0.257 0.743 39 H 0.292 0.708 40 H 0.093 0.907 41 H 0.142 0.858 42 H 0.127 0.873 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 21.110 -16.286 -8.321 27.931 hybrid contribution 1.298 1.095 0.089 1.701 sum 22.409 -15.191 -8.233 28.297 Atomic orbital electron populations 1.69990 1.07222 1.28809 1.49926 1.25740 0.95841 1.02714 0.93918 0.85408 0.78285 0.77862 0.78921 1.19707 1.19857 1.19572 1.21375 0.93390 0.90962 1.52836 0.92905 1.19327 0.85661 0.81486 0.98084 1.48822 1.23702 1.20344 1.19842 1.23140 1.00445 0.88906 0.96681 1.21669 1.02240 1.06620 1.01886 1.19088 0.90959 0.92978 0.94125 1.41577 1.30495 1.25328 1.31686 1.15691 0.81059 0.79815 0.81945 1.90831 1.64540 1.60057 1.32120 1.47299 1.25236 1.32150 1.30826 1.21459 0.89528 0.86199 1.00959 1.21855 0.95875 1.03264 0.94073 1.20846 0.84917 0.90801 0.91329 1.86610 1.83792 1.41188 1.22960 1.24657 0.90731 0.71964 0.82142 1.90763 1.79230 1.46126 1.27151 1.84435 1.26017 1.81893 1.39381 1.22630 0.95951 0.95841 1.05046 1.21856 0.92682 0.98922 0.87520 1.77231 1.04816 1.17945 1.17730 0.91851 0.96043 0.92426 0.78270 0.81703 0.74218 0.88710 0.89576 0.88572 0.90365 0.74319 0.70785 0.90737 0.85813 0.87304 0.89091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.23 13.29 21.45 0.28 -51.94 16 2 C 0.02 1.01 5.46 84.66 0.46 1.47 16 3 Si 0.97 43.46 29.54 68.60 2.03 45.48 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.55 -30.91 9.23 25.60 0.24 -30.67 16 8 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 9 C 0.27 14.24 6.26 85.63 0.54 14.77 16 10 N -0.35 -16.35 3.67 -351.85 -1.29 -17.64 16 11 C 0.06 2.28 11.44 83.52 0.96 3.23 16 12 C -0.29 -11.75 9.61 22.11 0.21 -11.53 16 13 C 0.28 11.49 8.11 133.31 1.08 12.57 16 14 N -0.64 -19.58 5.36 -321.21 -1.72 -21.30 16 15 C 0.71 20.78 8.26 179.05 1.48 22.26 16 16 O -0.60 -21.51 12.93 -4.00 -0.05 -21.56 16 17 N -0.62 -12.07 2.97 -836.90 -2.49 -14.56 16 18 C 0.14 2.43 6.18 86.36 0.53 2.97 16 19 C -0.11 -1.72 4.62 30.67 0.14 -1.58 16 20 C 0.16 1.83 0.94 -11.51 -0.01 1.82 16 21 O -0.54 -4.18 11.63 -135.79 -1.58 -5.75 16 22 C 0.46 6.09 7.20 71.24 0.51 6.60 16 23 O -0.54 -11.57 16.88 21.96 0.37 -11.20 16 24 O -0.50 -3.14 12.86 -46.52 -0.60 -3.73 16 25 C -0.16 -1.47 5.07 30.68 0.16 -1.31 16 26 C 0.11 1.29 6.19 86.37 0.53 1.83 16 27 N -0.35 -16.14 12.42 -54.43 -0.68 -16.82 16 28 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 29 H 0.02 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.06 2.94 8.07 -2.39 -0.02 2.92 16 31 H 0.20 6.35 8.06 -2.91 -0.02 6.33 16 32 H 0.17 6.49 5.93 -2.91 -0.02 6.47 16 33 H 0.42 10.22 6.28 -92.71 -0.58 9.64 16 34 H 0.09 1.39 7.81 -2.38 -0.02 1.37 16 35 H 0.09 1.82 7.03 -2.39 -0.02 1.80 16 36 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.08 1.49 7.92 -2.39 -0.02 1.48 16 38 H 0.40 0.25 8.63 -74.06 -0.64 -0.39 16 39 H 0.43 -0.20 9.10 -74.06 -0.67 -0.88 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.11 0.81 7.81 -2.39 -0.02 0.79 16 43 H 0.09 0.99 5.57 -2.39 -0.01 0.98 16 Total: -1.00 -79.10 362.32 0.31 -78.79 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -0.79 Total: 17.81 kcal Atomic # 6 Polarization: 15.60 SS G_CDS: 6.83 Total: 22.43 kcal Atomic # 7 Polarization: -116.37 SS G_CDS: -5.89 Total: -122.26 kcal Atomic # 8 Polarization: -40.39 SS G_CDS: -1.86 Total: -42.25 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -79.10 0.31 -78.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069204.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.649 kcal (2) G-P(sol) polarization free energy of solvation -79.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds