Wall clock time and date at job start Tue Mar 31 2020 20:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.34968 * 125.97531 * 124.71606 * 10 9 7 12 12 C 1.35236 * 107.86005 * 179.83904 * 11 10 9 13 13 C 1.40406 * 107.87053 * 0.42153 * 12 11 10 14 14 N 1.40192 * 125.97547 * 179.75840 * 13 12 11 15 15 C 1.34768 * 120.00281 * 0.02562 * 14 13 12 16 16 O 1.21598 * 119.99940 * 0.02562 * 15 14 13 17 17 N 1.34777 * 120.00091 * 179.97438 * 15 14 13 18 18 C 1.46502 * 119.99861 * 179.97438 * 17 15 14 19 19 C 1.53003 * 109.47310 * 180.02562 * 18 17 15 20 20 C 1.50705 * 110.45236 * 302.60828 * 19 18 17 21 21 O 1.20818 * 119.99828 * 239.28918 * 20 19 18 22 22 O 1.34227 * 119.99879 * 59.30218 * 20 19 18 23 23 C 1.54499 * 110.51384 * 180.02562 * 19 18 17 24 24 C 1.54486 * 104.06358 * 241.35535 * 23 19 18 25 25 O 1.44427 * 104.79817 * 23.97816 * 24 23 19 26 26 C 1.44422 * 105.27969 * 319.48808 * 25 24 23 27 27 N 1.31215 * 108.05072 * 359.74133 * 13 12 11 28 28 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 30 30 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 31 31 H 1.08003 * 126.06712 * 0.02562 * 11 10 9 32 32 H 1.08003 * 126.07129 * 180.16636 * 12 11 10 33 33 H 0.96998 * 119.99569 * 180.02562 * 14 13 12 34 34 H 0.96997 * 120.00029 * 0.02562 * 17 15 14 35 35 H 1.08993 * 109.47739 * 300.00440 * 18 17 15 36 36 H 1.09003 * 109.46698 * 60.00605 * 18 17 15 37 37 H 0.96704 * 116.99774 * 180.02562 * 22 20 19 38 38 H 1.09005 * 110.51382 * 359.97438 * 23 19 18 39 39 H 1.09000 * 110.51218 * 122.57099 * 23 19 18 40 40 H 1.09003 * 110.37172 * 142.80915 * 24 23 19 41 41 H 1.08999 * 110.37234 * 265.15104 * 24 23 19 42 42 H 1.09003 * 110.37112 * 281.68836 * 26 25 24 43 43 H 1.09000 * 110.37290 * 159.34496 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5754 -0.0001 11 6 4.8507 -3.1154 -0.8977 12 6 5.0560 -4.4062 -0.5502 13 6 4.2938 -4.6694 0.5992 14 7 4.2226 -5.8942 1.2775 15 6 4.9285 -6.9527 0.8331 16 8 5.6277 -6.8452 -0.1559 17 7 4.8604 -8.1301 1.4855 18 6 5.6274 -9.2808 1.0021 19 6 5.3737 -10.4826 1.9145 20 6 5.7373 -10.1487 3.3384 21 8 6.5797 -10.7954 3.9143 22 8 5.1249 -9.1329 3.9668 23 6 6.1728 -11.7114 1.4261 24 6 5.0862 -12.7581 1.0942 25 8 3.8963 -11.9834 0.8298 26 6 3.8988 -10.9321 1.8199 27 7 3.6602 -3.5683 0.9278 28 1 -0.4850 0.8401 -0.0004 29 1 3.8751 -0.6798 -0.8895 30 1 3.8745 -0.6810 0.8905 31 1 5.2921 -2.6062 -1.7417 32 1 5.6901 -5.1109 -1.0676 33 1 3.6651 -5.9798 2.0667 34 1 4.3030 -8.2157 2.2747 35 1 5.3160 -9.5243 -0.0137 36 1 6.6899 -9.0376 1.0080 37 1 5.3919 -8.9564 4.8794 38 1 6.7483 -11.4630 0.5343 39 1 6.8305 -12.0773 2.2146 40 1 5.3692 -13.3321 0.2119 41 1 4.9260 -13.4214 1.9442 42 1 3.5566 -11.3154 2.7813 43 1 3.2696 -10.1034 1.4951 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601069218.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:17 Heat of formation + Delta-G solvation = -65.517258 kcal Electronic energy + Delta-G solvation = -28897.653905 eV Core-core repulsion = 24559.788645 eV Total energy + Delta-G solvation = -4337.865260 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.70388 -40.72002 -39.63358 -39.32046 -36.78872 -35.69345 -34.67854 -33.35232 -32.71772 -31.18204 -30.04748 -29.36258 -27.29902 -26.29437 -24.65580 -23.50566 -22.65050 -21.64746 -20.58882 -20.37617 -19.87094 -18.80073 -17.97601 -17.81466 -17.10837 -16.81320 -16.52305 -16.28398 -15.87711 -15.70639 -15.49989 -15.07810 -14.87748 -14.53170 -14.38701 -13.97695 -13.57800 -13.39167 -13.04405 -12.99026 -12.80889 -12.52629 -12.30220 -12.24769 -12.12199 -12.11146 -11.95254 -11.49419 -11.16472 -11.01165 -10.77653 -10.64151 -10.38196 -10.12512 -9.99357 -9.77139 -9.51943 -9.33930 -8.75825 -8.15938 -7.46760 -6.22707 -4.24762 1.52898 2.22868 2.30737 2.59747 3.05144 3.15820 3.22936 3.23581 3.36397 3.40971 3.64845 3.79360 3.94059 4.06820 4.23557 4.28301 4.49404 4.57063 4.60482 4.89940 5.05189 5.10763 5.12787 5.19257 5.27495 5.32833 5.36777 5.45560 5.70740 5.89436 6.09114 6.14913 6.19405 6.34566 6.47764 6.57217 6.72145 6.94816 7.25430 7.29269 7.44360 7.83280 7.88770 8.34963 8.54112 8.60419 8.87502 9.32424 10.90025 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024313 B = 0.002051 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.389461 B =13649.537354 C =13686.508622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.076 3.924 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.534 4.534 8 H 0.086 0.914 9 C 0.232 3.768 10 N -0.321 5.321 11 C 0.050 3.950 12 C -0.282 4.282 13 C 0.279 3.721 14 N -0.641 5.641 15 C 0.716 3.284 16 O -0.568 6.568 17 N -0.744 5.744 18 C 0.159 3.841 19 C -0.100 4.100 20 C 0.496 3.504 21 O -0.504 6.504 22 O -0.511 6.511 23 C -0.144 4.144 24 C 0.043 3.957 25 O -0.361 6.361 26 C 0.061 3.939 27 N -0.300 5.300 28 H 0.268 0.732 29 H 0.049 0.951 30 H 0.041 0.959 31 H 0.168 0.832 32 H 0.163 0.837 33 H 0.408 0.592 34 H 0.404 0.596 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.418 0.582 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.395 -23.788 5.862 27.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.572 4.572 8 H 0.104 0.896 9 C 0.113 3.887 10 N -0.102 5.102 11 C -0.099 4.099 12 C -0.313 4.313 13 C 0.024 3.976 14 N -0.291 5.291 15 C 0.415 3.585 16 O -0.443 6.443 17 N -0.405 5.405 18 C 0.034 3.966 19 C -0.102 4.102 20 C 0.337 3.663 21 O -0.391 6.391 22 O -0.324 6.324 23 C -0.182 4.182 24 C -0.033 4.033 25 O -0.279 6.279 26 C -0.016 4.016 27 N -0.130 5.130 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.186 0.814 32 H 0.180 0.820 33 H 0.243 0.757 34 H 0.241 0.759 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.279 0.721 38 H 0.115 0.885 39 H 0.125 0.875 40 H 0.120 0.880 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 11.984 -23.200 5.376 26.660 hybrid contribution 0.619 0.710 1.079 1.432 sum 12.603 -22.490 6.454 26.576 Atomic orbital electron populations 1.69874 1.06154 1.27268 1.49235 1.24838 0.94873 0.98798 0.94301 0.86906 0.80428 0.83843 0.78915 1.19715 1.20570 1.18874 1.21118 0.87820 0.95690 1.52545 0.89631 1.20034 0.97421 0.73064 0.98153 1.48589 1.32796 1.10170 1.18691 1.22550 0.96039 0.94687 0.96601 1.21533 1.11466 0.96750 1.01591 1.18783 0.98649 0.85844 0.94318 1.41330 1.49016 1.07289 1.31480 1.15534 0.80457 0.79665 0.82827 1.90876 1.43777 1.82972 1.26676 1.45107 1.52527 1.09557 1.33294 1.21158 0.97042 0.81419 0.96987 1.22276 1.00022 0.98639 0.89224 1.22847 0.78132 0.76719 0.88597 1.90725 1.31251 1.50044 1.67047 1.84385 1.64267 1.49928 1.33814 1.23119 0.98972 0.92160 1.03933 1.23523 0.83726 0.93915 1.02171 1.89231 1.43610 1.42142 1.52893 1.23475 0.92468 0.91922 0.93761 1.77387 1.23869 0.95554 1.16214 0.92203 0.93345 0.94085 0.81440 0.81995 0.75696 0.75869 0.88827 0.90343 0.72144 0.88516 0.87503 0.87964 0.91670 0.91243 0.87076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.55 13.96 55.43 0.77 -25.78 16 2 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.87 20.07 27.47 -169.99 -4.67 15.40 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.26 -5.75 6.54 56.52 0.37 -5.38 16 7 C -0.53 -15.01 9.79 -34.44 -0.34 -15.35 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 9 C 0.23 5.49 5.33 -5.19 -0.03 5.46 16 10 N -0.32 -7.24 3.67 -62.56 -0.23 -7.47 16 11 C 0.05 0.97 11.44 -17.24 -0.20 0.77 16 12 C -0.28 -5.48 9.61 -39.84 -0.38 -5.86 16 13 C 0.28 5.50 8.11 -154.36 -1.25 4.25 16 14 N -0.64 -9.68 5.45 -15.50 -0.08 -9.76 16 15 C 0.72 10.06 8.53 -86.92 -0.74 9.32 16 16 O -0.57 -9.81 13.47 5.28 0.07 -9.74 16 17 N -0.74 -6.97 4.61 -65.22 -0.30 -7.27 16 18 C 0.16 1.29 4.38 -4.04 -0.02 1.27 16 19 C -0.10 -0.64 0.72 -154.09 -0.11 -0.75 16 20 C 0.50 3.45 6.85 36.01 0.25 3.69 16 21 O -0.50 -4.82 16.04 -18.74 -0.30 -5.12 16 22 O -0.51 -2.39 10.94 -39.25 -0.43 -2.82 16 23 C -0.14 -0.79 6.32 -25.16 -0.16 -0.95 16 24 C 0.04 0.23 7.63 37.94 0.29 0.52 16 25 O -0.36 -2.88 11.65 -35.23 -0.41 -3.29 16 26 C 0.06 0.39 6.52 37.94 0.25 0.64 16 27 N -0.30 -6.80 12.42 31.44 0.39 -6.41 16 28 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.05 1.04 7.50 -51.93 -0.39 0.65 16 30 H 0.04 0.97 7.20 -51.93 -0.37 0.59 16 31 H 0.17 2.55 8.06 -52.48 -0.42 2.13 16 32 H 0.16 3.08 5.91 -52.48 -0.31 2.77 16 33 H 0.41 4.99 8.84 -40.82 -0.36 4.63 16 34 H 0.40 2.93 5.98 -40.82 -0.24 2.69 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.42 0.50 9.10 45.56 0.41 0.92 16 38 H 0.10 0.44 7.73 -51.93 -0.40 0.04 16 39 H 0.11 0.64 6.51 -51.93 -0.34 0.31 16 40 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.37 7.87 -51.93 -0.41 -0.04 16 43 H 0.11 0.70 7.27 -51.93 -0.38 0.32 16 LS Contribution 362.01 15.07 5.46 5.46 Total: -1.00 -37.19 362.01 -6.76 -43.96 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -4.49 Total: 7.81 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: -2.54 Total: 5.04 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: 0.55 Total: -56.69 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -1.07 Total: -20.97 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.67 Total: 15.40 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.19 -6.76 -43.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069218.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.562 kcal (2) G-P(sol) polarization free energy of solvation -37.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds