Wall clock time and date at job start Tue Mar 31 2020 20:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.34968 * 125.97531 * 124.71606 * 10 9 7 12 12 C 1.35236 * 107.86005 * 179.83904 * 11 10 9 13 13 C 1.40406 * 107.87053 * 0.42153 * 12 11 10 14 14 N 1.40192 * 125.97547 * 179.75840 * 13 12 11 15 15 C 1.34768 * 120.00281 * 0.02562 * 14 13 12 16 16 O 1.21598 * 119.99940 * 0.02562 * 15 14 13 17 17 N 1.34777 * 120.00091 * 179.97438 * 15 14 13 18 18 C 1.46502 * 119.99861 * 179.97438 * 17 15 14 19 19 C 1.53003 * 109.47310 * 180.02562 * 18 17 15 20 20 C 1.50705 * 110.45236 * 302.60828 * 19 18 17 21 21 O 1.20818 * 119.99828 * 239.28918 * 20 19 18 22 22 O 1.34227 * 119.99879 * 59.30218 * 20 19 18 23 23 C 1.54499 * 110.51384 * 180.02562 * 19 18 17 24 24 C 1.54486 * 104.06358 * 241.35535 * 23 19 18 25 25 O 1.44427 * 104.79817 * 23.97816 * 24 23 19 26 26 C 1.44422 * 105.27969 * 319.48808 * 25 24 23 27 27 N 1.31215 * 108.05072 * 359.74133 * 13 12 11 28 28 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 30 30 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 31 31 H 1.08003 * 126.06712 * 0.02562 * 11 10 9 32 32 H 1.08003 * 126.07129 * 180.16636 * 12 11 10 33 33 H 0.96998 * 119.99569 * 180.02562 * 14 13 12 34 34 H 0.96997 * 120.00029 * 0.02562 * 17 15 14 35 35 H 1.08993 * 109.47739 * 300.00440 * 18 17 15 36 36 H 1.09003 * 109.46698 * 60.00605 * 18 17 15 37 37 H 0.96704 * 116.99774 * 180.02562 * 22 20 19 38 38 H 1.09005 * 110.51382 * 359.97438 * 23 19 18 39 39 H 1.09000 * 110.51218 * 122.57099 * 23 19 18 40 40 H 1.09003 * 110.37172 * 142.80915 * 24 23 19 41 41 H 1.08999 * 110.37234 * 265.15104 * 24 23 19 42 42 H 1.09003 * 110.37112 * 281.68836 * 26 25 24 43 43 H 1.09000 * 110.37290 * 159.34496 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5754 -0.0001 11 6 4.8507 -3.1154 -0.8977 12 6 5.0560 -4.4062 -0.5502 13 6 4.2938 -4.6694 0.5992 14 7 4.2226 -5.8942 1.2775 15 6 4.9285 -6.9527 0.8331 16 8 5.6277 -6.8452 -0.1559 17 7 4.8604 -8.1301 1.4855 18 6 5.6274 -9.2808 1.0021 19 6 5.3737 -10.4826 1.9145 20 6 5.7373 -10.1487 3.3384 21 8 6.5797 -10.7954 3.9143 22 8 5.1249 -9.1329 3.9668 23 6 6.1728 -11.7114 1.4261 24 6 5.0862 -12.7581 1.0942 25 8 3.8963 -11.9834 0.8298 26 6 3.8988 -10.9321 1.8199 27 7 3.6602 -3.5683 0.9278 28 1 -0.4850 0.8401 -0.0004 29 1 3.8751 -0.6798 -0.8895 30 1 3.8745 -0.6810 0.8905 31 1 5.2921 -2.6062 -1.7417 32 1 5.6901 -5.1109 -1.0676 33 1 3.6651 -5.9798 2.0667 34 1 4.3030 -8.2157 2.2747 35 1 5.3160 -9.5243 -0.0137 36 1 6.6899 -9.0376 1.0080 37 1 5.3919 -8.9564 4.8794 38 1 6.7483 -11.4630 0.5343 39 1 6.8305 -12.0773 2.2146 40 1 5.3692 -13.3321 0.2119 41 1 4.9260 -13.4214 1.9442 42 1 3.5566 -11.3154 2.7813 43 1 3.2696 -10.1034 1.4951 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601069218.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:16 Heat of formation + Delta-G solvation = -95.207341 kcal Electronic energy + Delta-G solvation = -28898.941363 eV Core-core repulsion = 24559.788645 eV Total energy + Delta-G solvation = -4339.152718 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.38540 -42.07231 -40.77111 -39.92820 -37.33313 -36.61388 -36.00746 -35.18434 -33.65546 -32.80877 -30.96009 -30.56138 -28.97701 -27.17166 -25.22325 -24.63934 -23.86326 -22.85921 -21.85339 -21.40079 -20.93296 -19.62583 -19.07624 -18.84904 -18.40717 -18.16323 -17.35430 -17.10842 -16.89280 -16.68574 -16.35856 -16.09054 -15.98135 -15.64504 -15.45091 -15.37835 -14.79016 -14.58834 -14.35230 -13.96003 -13.85477 -13.78817 -13.57930 -13.33164 -12.99088 -12.75433 -12.63568 -12.51864 -12.43968 -12.28935 -11.97062 -11.81658 -11.64023 -11.57553 -11.45659 -11.13441 -10.86920 -10.85084 -10.28189 -9.71337 -9.01580 -8.35620 -6.45531 0.95133 1.05789 1.13961 1.38179 1.41250 1.50843 1.70848 1.80294 2.08300 2.30649 2.41573 2.88754 2.95996 2.98000 3.16316 3.45480 3.56683 3.95326 4.05263 4.09706 4.18422 4.24189 4.40584 4.49093 4.61598 4.62845 4.63624 4.80442 4.81328 4.85503 4.88335 4.96281 4.96527 5.11419 5.25861 5.35826 5.49487 5.66096 5.81481 5.94726 6.04609 6.44048 6.59700 6.70064 6.85419 7.13819 7.17706 7.40875 8.81454 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024313 B = 0.002051 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.389461 B =13649.537354 C =13686.508622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.254 1.254 5 H -0.282 1.282 6 H -0.239 1.239 7 C -0.545 4.545 8 H 0.027 0.973 9 C 0.239 3.761 10 N -0.346 5.346 11 C 0.060 3.940 12 C -0.293 4.293 13 C 0.285 3.715 14 N -0.636 5.636 15 C 0.715 3.285 16 O -0.598 6.598 17 N -0.722 5.722 18 C 0.159 3.841 19 C -0.093 4.093 20 C 0.502 3.498 21 O -0.531 6.531 22 O -0.506 6.506 23 C -0.141 4.141 24 C 0.041 3.959 25 O -0.383 6.383 26 C 0.061 3.939 27 N -0.349 5.349 28 H 0.272 0.728 29 H 0.081 0.919 30 H 0.045 0.955 31 H 0.210 0.790 32 H 0.168 0.832 33 H 0.420 0.580 34 H 0.416 0.584 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.435 0.565 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.116 0.884 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.388 -23.579 5.816 28.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.178 1.178 5 H -0.207 1.207 6 H -0.162 1.162 7 C -0.583 4.583 8 H 0.045 0.955 9 C 0.120 3.880 10 N -0.128 5.128 11 C -0.088 4.088 12 C -0.324 4.324 13 C 0.029 3.971 14 N -0.287 5.287 15 C 0.414 3.586 16 O -0.476 6.476 17 N -0.382 5.382 18 C 0.035 3.965 19 C -0.095 4.095 20 C 0.344 3.656 21 O -0.420 6.420 22 O -0.321 6.321 23 C -0.179 4.179 24 C -0.035 4.035 25 O -0.302 6.302 26 C -0.016 4.016 27 N -0.180 5.180 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.226 0.774 32 H 0.186 0.814 33 H 0.257 0.743 34 H 0.256 0.744 35 H 0.109 0.891 36 H 0.095 0.905 37 H 0.298 0.702 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.135 0.865 41 H 0.091 0.909 42 H 0.099 0.901 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 13.979 -23.053 5.378 27.491 hybrid contribution -0.046 0.444 1.123 1.209 sum 13.933 -22.608 6.501 27.341 Atomic orbital electron populations 1.70053 1.08562 1.28752 1.50780 1.25925 0.95772 1.03540 0.93296 0.85617 0.79504 0.77226 0.80034 1.17790 1.20712 1.16218 1.21241 0.90537 0.93714 1.52856 0.95491 1.19875 0.94120 0.74436 0.99594 1.48485 1.34334 1.10008 1.19957 1.23239 0.94403 0.94677 0.96478 1.21730 1.11789 0.97141 1.01718 1.19119 0.97248 0.86462 0.94309 1.41353 1.49433 1.06272 1.31692 1.15674 0.79937 0.80262 0.82678 1.90846 1.45048 1.83580 1.28157 1.44973 1.51995 1.08320 1.32927 1.21241 0.96641 0.81280 0.97354 1.22202 1.00473 0.98113 0.88706 1.22854 0.77553 0.76598 0.88620 1.90724 1.32484 1.51094 1.67704 1.84336 1.63751 1.48899 1.35142 1.23121 0.98929 0.91659 1.04155 1.23676 0.82800 0.93794 1.03231 1.89209 1.44710 1.42735 1.53525 1.23526 0.92222 0.91807 0.94083 1.77304 1.26004 0.96761 1.17892 0.91927 0.90097 0.93689 0.77357 0.81428 0.74263 0.74422 0.89089 0.90529 0.70173 0.87596 0.87849 0.86545 0.90935 0.90096 0.87207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.98 13.96 21.45 0.30 -57.68 16 2 C 0.01 0.75 5.47 84.66 0.46 1.22 16 3 Si 0.96 40.55 27.47 68.60 1.88 42.43 16 4 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.24 -9.13 6.54 99.48 0.65 -8.48 16 7 C -0.55 -31.38 9.79 25.60 0.25 -31.13 16 8 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 9 C 0.24 11.04 5.33 85.63 0.46 11.49 16 10 N -0.35 -15.43 3.67 -351.84 -1.29 -16.72 16 11 C 0.06 2.20 11.44 83.52 0.96 3.16 16 12 C -0.29 -11.10 9.61 22.11 0.21 -10.89 16 13 C 0.28 11.21 8.11 133.31 1.08 12.29 16 14 N -0.64 -18.92 5.45 -321.23 -1.75 -20.67 16 15 C 0.72 19.48 8.53 179.06 1.53 21.01 16 16 O -0.60 -20.24 13.47 -4.02 -0.05 -20.29 16 17 N -0.72 -12.61 4.61 -478.52 -2.21 -14.81 16 18 C 0.16 2.38 4.38 86.38 0.38 2.76 16 19 C -0.09 -1.06 0.72 -51.91 -0.04 -1.10 16 20 C 0.50 6.24 6.85 71.24 0.49 6.72 16 21 O -0.53 -9.55 16.04 21.99 0.35 -9.20 16 22 O -0.51 -3.81 10.94 -51.39 -0.56 -4.37 16 23 C -0.14 -1.35 6.32 31.61 0.20 -1.15 16 24 C 0.04 0.38 7.63 72.49 0.55 0.94 16 25 O -0.38 -5.67 11.65 -148.98 -1.74 -7.40 16 26 C 0.06 0.69 6.52 72.49 0.47 1.17 16 27 N -0.35 -16.06 12.42 -54.43 -0.68 -16.74 16 28 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 29 H 0.08 3.20 7.50 -2.39 -0.02 3.18 16 30 H 0.05 2.03 7.20 -2.39 -0.02 2.01 16 31 H 0.21 5.62 8.06 -2.91 -0.02 5.60 16 32 H 0.17 6.19 5.91 -2.91 -0.02 6.18 16 33 H 0.42 10.09 8.84 -92.71 -0.82 9.28 16 34 H 0.42 5.37 5.98 -92.71 -0.55 4.82 16 35 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.43 0.21 9.10 -74.05 -0.67 -0.47 16 38 H 0.11 0.81 7.73 -2.38 -0.02 0.79 16 39 H 0.10 1.13 6.51 -2.39 -0.02 1.11 16 40 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.07 0.56 8.14 -2.39 -0.02 0.55 16 42 H 0.08 0.74 7.87 -2.39 -0.02 0.72 16 43 H 0.11 1.25 7.27 -2.39 -0.02 1.23 16 Total: -1.00 -83.48 362.01 0.26 -83.22 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: -1.00 Total: 25.75 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: 7.00 Total: 16.48 kcal Atomic # 7 Polarization: -121.00 SS G_CDS: -5.63 Total: -126.62 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -2.00 Total: -41.27 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 1.88 Total: 42.43 kcal Total: -83.48 0.26 -83.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069218.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.989 kcal (2) G-P(sol) polarization free energy of solvation -83.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds