Wall clock time and date at job start Tue Mar 31 2020 20:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86791 * 120.00589 * 2 1 4 4 H 1.48498 * 109.47280 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47200 * 300.00189 * 3 2 1 6 6 H 1.48502 * 109.47319 * 59.99887 * 3 2 1 7 7 C 1.37885 * 119.99307 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99596 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99975 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.34968 * 125.97971 * 124.99765 * 10 9 7 12 12 C 1.35234 * 107.86221 * 180.02562 * 11 10 9 13 13 C 1.40396 * 107.86757 * 359.97438 * 12 11 10 14 14 N 1.40200 * 125.97280 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99970 * 359.97438 * 14 13 12 16 16 O 1.21593 * 119.99953 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99726 * 180.27511 * 15 14 13 18 18 C 1.46505 * 119.99724 * 179.72746 * 17 15 14 19 19 C 1.52999 * 109.47192 * 180.02562 * 18 17 15 20 20 C 1.50693 * 110.45833 * 57.38906 * 19 18 17 21 21 O 1.20831 * 119.99660 * 120.70725 * 20 19 18 22 22 O 1.34223 * 120.00482 * 300.70592 * 20 19 18 23 23 C 1.54508 * 110.51307 * 179.97438 * 19 18 17 24 24 C 1.54482 * 104.06268 * 118.64061 * 23 19 18 25 25 O 1.44423 * 104.80247 * 23.97839 * 24 23 19 26 26 C 1.44425 * 105.27856 * 319.48492 * 25 24 23 27 27 N 1.31210 * 108.05788 * 0.26522 * 13 12 11 28 28 H 0.97001 * 119.99459 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.47632 * 59.99507 * 9 7 2 30 30 H 1.08997 * 109.47035 * 299.99235 * 9 7 2 31 31 H 1.08004 * 126.06815 * 0.02562 * 11 10 9 32 32 H 1.08004 * 126.06428 * 179.97438 * 12 11 10 33 33 H 0.97000 * 120.00293 * 180.02562 * 14 13 12 34 34 H 0.97000 * 120.00483 * 359.73178 * 17 15 14 35 35 H 1.09003 * 109.46699 * 299.99993 * 18 17 15 36 36 H 1.08993 * 109.47199 * 60.00006 * 18 17 15 37 37 H 0.96703 * 117.00247 * 180.02562 * 22 20 19 38 38 H 1.08994 * 110.51155 * 237.28773 * 23 19 18 39 39 H 1.09004 * 110.50789 * 359.86009 * 23 19 18 40 40 H 1.08996 * 110.37023 * 142.81092 * 24 23 19 41 41 H 1.09001 * 110.37366 * 265.14971 * 24 23 19 42 42 H 1.08997 * 110.37598 * 281.68583 * 26 25 24 43 43 H 1.08994 * 110.37285 * 159.34151 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3461 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1943 0.0010 9 6 1.2508 -2.4992 0.0005 10 7 2.2027 -3.6128 0.0005 11 6 2.2417 -4.6225 0.8952 12 6 3.2605 -5.4425 0.5511 13 6 3.8685 -4.9148 -0.5991 14 7 4.9645 -5.4658 -1.2778 15 6 5.5294 -6.6055 -0.8323 16 8 5.0882 -7.1560 0.1580 17 7 6.5866 -7.1322 -1.4816 18 6 7.2044 -8.3679 -0.9938 19 6 8.3751 -8.7462 -1.9033 20 6 9.3799 -7.6248 -1.9624 21 8 10.5204 -7.8164 -1.6122 22 8 9.0082 -6.4131 -2.4043 23 6 9.0455 -10.0478 -1.4096 24 6 8.8645 -11.0328 -2.5858 25 8 8.7075 -10.1925 -3.7499 26 6 7.8682 -9.0988 -3.3194 27 7 3.2349 -3.8130 -0.9249 28 1 -0.4849 0.8401 -0.0004 29 1 0.6244 -2.5571 -0.8896 30 1 0.6239 -2.5567 0.8903 31 1 1.5772 -4.7526 1.7367 32 1 3.5544 -6.3435 1.0692 33 1 5.3168 -5.0265 -2.0677 34 1 6.9384 -6.6932 -2.2718 35 1 7.5685 -8.2154 0.0222 36 1 6.4661 -9.1697 -0.9987 37 1 9.6879 -5.7256 -2.4244 38 1 10.1041 -9.8806 -1.2109 39 1 8.5444 -10.4204 -0.5161 40 1 9.7461 -11.6651 -2.6903 41 1 7.9741 -11.6435 -2.4358 42 1 6.8252 -9.4129 -3.2818 43 1 7.9847 -8.2455 -3.9875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601069219.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:21 Heat of formation + Delta-G solvation = -72.984631 kcal Electronic energy + Delta-G solvation = -28867.999712 eV Core-core repulsion = 24529.810643 eV Total energy + Delta-G solvation = -4338.189069 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.67146 -40.67168 -39.57079 -39.28242 -36.71452 -35.76547 -34.65949 -33.41373 -32.71955 -30.88957 -30.02804 -29.28787 -26.91207 -26.06308 -24.79508 -23.49395 -22.99085 -21.68490 -20.60738 -20.37252 -19.84136 -18.64223 -17.90928 -17.73695 -17.07483 -16.59622 -16.51908 -16.15036 -15.79349 -15.70587 -15.44181 -15.33446 -14.80235 -14.43760 -14.32273 -13.99677 -13.73417 -13.48754 -13.07111 -12.83298 -12.62846 -12.34193 -12.23482 -12.17923 -12.09529 -11.79699 -11.68646 -11.59332 -11.13898 -11.05443 -10.88774 -10.43737 -10.33271 -10.26800 -10.11832 -9.71159 -9.49760 -9.35545 -8.63973 -8.10744 -7.42213 -6.24685 -4.29456 1.61188 2.25439 2.35989 2.64438 3.08866 3.21737 3.28609 3.29336 3.35331 3.45281 3.69175 3.82366 3.99225 4.10433 4.26882 4.35971 4.47752 4.56839 4.63907 4.89910 5.07869 5.10544 5.12050 5.14776 5.20951 5.25384 5.47249 5.53066 5.79951 5.96740 6.08412 6.14362 6.24452 6.52499 6.55235 6.86393 6.99794 7.09657 7.33139 7.48597 7.69580 7.81467 7.95922 8.06443 8.53802 8.66079 8.81079 9.36120 10.84062 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021462 B = 0.002121 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.295216 B =13196.865776 C =13937.483310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.069 0.931 9 C 0.258 3.742 10 N -0.320 5.320 11 C 0.051 3.949 12 C -0.286 4.286 13 C 0.275 3.725 14 N -0.641 5.641 15 C 0.715 3.285 16 O -0.568 6.568 17 N -0.745 5.745 18 C 0.158 3.842 19 C -0.100 4.100 20 C 0.497 3.503 21 O -0.502 6.502 22 O -0.513 6.513 23 C -0.145 4.145 24 C 0.045 3.955 25 O -0.368 6.368 26 C 0.058 3.942 27 N -0.307 5.307 28 H 0.266 0.734 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.167 0.833 32 H 0.161 0.839 33 H 0.407 0.593 34 H 0.404 0.596 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.418 0.582 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.951 -20.407 -5.178 27.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.087 0.913 9 C 0.141 3.859 10 N -0.102 5.102 11 C -0.099 4.099 12 C -0.318 4.318 13 C 0.021 3.979 14 N -0.291 5.291 15 C 0.414 3.586 16 O -0.443 6.443 17 N -0.405 5.405 18 C 0.034 3.966 19 C -0.102 4.102 20 C 0.338 3.662 21 O -0.389 6.389 22 O -0.326 6.326 23 C -0.182 4.182 24 C -0.032 4.032 25 O -0.286 6.286 26 C -0.020 4.020 27 N -0.138 5.138 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.185 0.815 32 H 0.178 0.822 33 H 0.242 0.758 34 H 0.242 0.758 35 H 0.098 0.902 36 H 0.109 0.891 37 H 0.279 0.721 38 H 0.124 0.876 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.087 0.913 42 H 0.104 0.896 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 16.351 -20.114 -5.197 26.437 hybrid contribution 1.139 1.356 0.047 1.772 sum 17.490 -18.758 -5.150 26.159 Atomic orbital electron populations 1.69931 1.06031 1.27495 1.49907 1.24955 0.94992 0.99565 0.94665 0.86275 0.80041 0.82488 0.77705 1.19592 1.20708 1.20785 1.21298 0.94023 0.89378 1.51819 0.91262 1.19738 0.85623 0.81318 0.99253 1.49061 1.23079 1.19757 1.18334 1.22557 1.00323 0.90305 0.96735 1.21500 1.02055 1.06496 1.01710 1.18777 0.90719 0.94045 0.94378 1.41331 1.31456 1.24920 1.31391 1.15549 0.79922 0.80251 0.82838 1.90878 1.64597 1.62373 1.26497 1.45094 1.33711 1.28049 1.33663 1.21170 0.91954 0.87030 0.96492 1.22251 0.94548 0.93348 1.00003 1.22771 0.87881 0.82747 0.72753 1.90720 1.21093 1.82613 1.44496 1.84349 1.47979 1.21768 1.78547 1.23135 1.04025 0.91103 0.99985 1.23515 1.02546 0.93341 0.83770 1.89196 1.69993 1.36523 1.32935 1.23578 0.95653 0.91314 0.91414 1.77327 1.03747 1.16116 1.16588 0.92396 0.93742 0.92539 0.81541 0.82199 0.75788 0.75823 0.90210 0.89128 0.72106 0.87639 0.88385 0.88236 0.91285 0.89639 0.87827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.21 13.29 55.43 0.74 -24.48 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.91 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -14.57 9.23 -34.44 -0.32 -14.89 16 8 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 9 C 0.26 6.52 6.26 -5.20 -0.03 6.48 16 10 N -0.32 -7.39 3.67 -62.57 -0.23 -7.62 16 11 C 0.05 1.01 11.44 -17.24 -0.20 0.81 16 12 C -0.29 -5.62 9.60 -39.84 -0.38 -6.00 16 13 C 0.27 5.42 8.11 -154.36 -1.25 4.17 16 14 N -0.64 -9.57 5.46 -15.51 -0.08 -9.66 16 15 C 0.72 9.84 8.53 -86.92 -0.74 9.10 16 16 O -0.57 -9.65 13.47 5.28 0.07 -9.58 16 17 N -0.74 -6.70 4.93 -65.22 -0.32 -7.02 16 18 C 0.16 1.18 4.31 -4.04 -0.02 1.16 16 19 C -0.10 -0.63 0.72 -154.09 -0.11 -0.74 16 20 C 0.50 3.88 6.90 36.00 0.25 4.12 16 21 O -0.50 -5.40 16.04 -18.75 -0.30 -5.70 16 22 O -0.51 -2.78 10.77 -39.24 -0.42 -3.20 16 23 C -0.14 -0.79 6.32 -25.16 -0.16 -0.95 16 24 C 0.04 0.24 7.63 37.94 0.29 0.53 16 25 O -0.37 -2.91 11.65 -35.23 -0.41 -3.32 16 26 C 0.06 0.35 6.35 37.94 0.24 0.59 16 27 N -0.31 -6.96 12.42 31.44 0.39 -6.57 16 28 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 31 H 0.17 2.69 8.06 -52.48 -0.42 2.27 16 32 H 0.16 3.07 5.91 -52.48 -0.31 2.76 16 33 H 0.41 4.90 8.84 -40.82 -0.36 4.54 16 34 H 0.40 2.87 6.14 -40.82 -0.25 2.62 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.62 8.08 -51.93 -0.42 0.20 16 37 H 0.42 0.89 9.10 45.56 0.41 1.30 16 38 H 0.11 0.73 6.50 -51.93 -0.34 0.39 16 39 H 0.10 0.37 7.73 -51.93 -0.40 -0.03 16 40 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.09 0.44 7.83 -51.93 -0.41 0.04 16 43 H 0.10 0.56 7.73 -51.93 -0.40 0.16 16 LS Contribution 366.10 15.07 5.52 5.52 Total: -1.00 -36.05 366.10 -7.16 -43.21 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -4.55 Total: 6.23 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -2.53 Total: 5.96 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.49 Total: -55.35 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -1.06 Total: -21.80 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.05 -7.16 -43.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069219.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.774 kcal (2) G-P(sol) polarization free energy of solvation -36.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds