Wall clock time and date at job start Tue Mar 31 2020 20:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86791 * 120.00589 * 2 1 4 4 H 1.48498 * 109.47280 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47200 * 300.00189 * 3 2 1 6 6 H 1.48502 * 109.47319 * 59.99887 * 3 2 1 7 7 C 1.37885 * 119.99307 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99596 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99975 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.34968 * 125.97971 * 124.99765 * 10 9 7 12 12 C 1.35234 * 107.86221 * 180.02562 * 11 10 9 13 13 C 1.40396 * 107.86757 * 359.97438 * 12 11 10 14 14 N 1.40200 * 125.97280 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99970 * 359.97438 * 14 13 12 16 16 O 1.21593 * 119.99953 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99726 * 180.27511 * 15 14 13 18 18 C 1.46505 * 119.99724 * 179.72746 * 17 15 14 19 19 C 1.52999 * 109.47192 * 180.02562 * 18 17 15 20 20 C 1.50693 * 110.45833 * 57.38906 * 19 18 17 21 21 O 1.20831 * 119.99660 * 120.70725 * 20 19 18 22 22 O 1.34223 * 120.00482 * 300.70592 * 20 19 18 23 23 C 1.54508 * 110.51307 * 179.97438 * 19 18 17 24 24 C 1.54482 * 104.06268 * 118.64061 * 23 19 18 25 25 O 1.44423 * 104.80247 * 23.97839 * 24 23 19 26 26 C 1.44425 * 105.27856 * 319.48492 * 25 24 23 27 27 N 1.31210 * 108.05788 * 0.26522 * 13 12 11 28 28 H 0.97001 * 119.99459 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.47632 * 59.99507 * 9 7 2 30 30 H 1.08997 * 109.47035 * 299.99235 * 9 7 2 31 31 H 1.08004 * 126.06815 * 0.02562 * 11 10 9 32 32 H 1.08004 * 126.06428 * 179.97438 * 12 11 10 33 33 H 0.97000 * 120.00293 * 180.02562 * 14 13 12 34 34 H 0.97000 * 120.00483 * 359.73178 * 17 15 14 35 35 H 1.09003 * 109.46699 * 299.99993 * 18 17 15 36 36 H 1.08993 * 109.47199 * 60.00006 * 18 17 15 37 37 H 0.96703 * 117.00247 * 180.02562 * 22 20 19 38 38 H 1.08994 * 110.51155 * 237.28773 * 23 19 18 39 39 H 1.09004 * 110.50789 * 359.86009 * 23 19 18 40 40 H 1.08996 * 110.37023 * 142.81092 * 24 23 19 41 41 H 1.09001 * 110.37366 * 265.14971 * 24 23 19 42 42 H 1.08997 * 110.37598 * 281.68583 * 26 25 24 43 43 H 1.08994 * 110.37285 * 159.34151 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3461 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1943 0.0010 9 6 1.2508 -2.4992 0.0005 10 7 2.2027 -3.6128 0.0005 11 6 2.2417 -4.6225 0.8952 12 6 3.2605 -5.4425 0.5511 13 6 3.8685 -4.9148 -0.5991 14 7 4.9645 -5.4658 -1.2778 15 6 5.5294 -6.6055 -0.8323 16 8 5.0882 -7.1560 0.1580 17 7 6.5866 -7.1322 -1.4816 18 6 7.2044 -8.3679 -0.9938 19 6 8.3751 -8.7462 -1.9033 20 6 9.3799 -7.6248 -1.9624 21 8 10.5204 -7.8164 -1.6122 22 8 9.0082 -6.4131 -2.4043 23 6 9.0455 -10.0478 -1.4096 24 6 8.8645 -11.0328 -2.5858 25 8 8.7075 -10.1925 -3.7499 26 6 7.8682 -9.0988 -3.3194 27 7 3.2349 -3.8130 -0.9249 28 1 -0.4849 0.8401 -0.0004 29 1 0.6244 -2.5571 -0.8896 30 1 0.6239 -2.5567 0.8903 31 1 1.5772 -4.7526 1.7367 32 1 3.5544 -6.3435 1.0692 33 1 5.3168 -5.0265 -2.0677 34 1 6.9384 -6.6932 -2.2718 35 1 7.5685 -8.2154 0.0222 36 1 6.4661 -9.1697 -0.9987 37 1 9.6879 -5.7256 -2.4244 38 1 10.1041 -9.8806 -1.2109 39 1 8.5444 -10.4204 -0.5161 40 1 9.7461 -11.6651 -2.6903 41 1 7.9741 -11.6435 -2.4358 42 1 6.8252 -9.4129 -3.2818 43 1 7.9847 -8.2455 -3.9875 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601069219.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:20 Heat of formation + Delta-G solvation = -100.480213 kcal Electronic energy + Delta-G solvation = -28869.192010 eV Core-core repulsion = 24529.810643 eV Total energy + Delta-G solvation = -4339.381367 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.35669 -42.04701 -40.74275 -39.86104 -37.31988 -36.63804 -36.00703 -35.25316 -33.59257 -32.50998 -30.91178 -30.53607 -28.58845 -26.97393 -25.39645 -24.91521 -23.87741 -22.89341 -21.89774 -21.38907 -20.91178 -19.48950 -18.77774 -18.68636 -18.40517 -18.09320 -17.50775 -17.00255 -16.83374 -16.54576 -16.39470 -16.12879 -15.95493 -15.83108 -15.53759 -15.27261 -14.66276 -14.46425 -14.22889 -14.02299 -13.76778 -13.67759 -13.56116 -13.16130 -12.92098 -12.75453 -12.71621 -12.54235 -12.29357 -12.26011 -12.08443 -12.02809 -11.73240 -11.60534 -11.36236 -11.10465 -10.80400 -10.71026 -10.25817 -9.69111 -9.02352 -8.31518 -6.45346 0.98823 1.10922 1.15002 1.38008 1.39558 1.52503 1.73415 1.84690 2.11173 2.36801 2.44145 2.83769 2.98272 3.00202 3.22466 3.53053 3.61019 3.99931 4.05840 4.09684 4.25270 4.31726 4.42571 4.54071 4.61429 4.68622 4.79485 4.82132 4.84411 4.93133 4.98328 5.03546 5.05267 5.13959 5.37435 5.51474 5.58746 5.68869 5.78371 5.90058 6.00857 6.32247 6.65565 6.74274 6.86754 7.17833 7.24528 7.43631 8.76019 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021462 B = 0.002121 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.295216 B =13196.865776 C =13937.483310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.017 3.983 3 Si 0.972 3.028 4 H -0.274 1.274 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.545 4.545 8 H 0.052 0.948 9 C 0.272 3.728 10 N -0.346 5.346 11 C 0.055 3.945 12 C -0.291 4.291 13 C 0.285 3.715 14 N -0.635 5.635 15 C 0.715 3.285 16 O -0.598 6.598 17 N -0.722 5.722 18 C 0.159 3.841 19 C -0.092 4.092 20 C 0.497 3.503 21 O -0.537 6.537 22 O -0.508 6.508 23 C -0.142 4.142 24 C 0.042 3.958 25 O -0.393 6.393 26 C 0.057 3.943 27 N -0.348 5.348 28 H 0.272 0.728 29 H 0.021 0.979 30 H 0.058 0.942 31 H 0.200 0.800 32 H 0.169 0.831 33 H 0.421 0.579 34 H 0.416 0.584 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.433 0.567 38 H 0.090 0.910 39 H 0.117 0.883 40 H 0.106 0.894 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.767 -20.981 -5.230 27.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.796 3.204 4 H -0.199 1.199 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.583 4.583 8 H 0.070 0.930 9 C 0.154 3.846 10 N -0.128 5.128 11 C -0.094 4.094 12 C -0.322 4.322 13 C 0.029 3.971 14 N -0.287 5.287 15 C 0.415 3.585 16 O -0.476 6.476 17 N -0.382 5.382 18 C 0.035 3.965 19 C -0.094 4.094 20 C 0.340 3.660 21 O -0.426 6.426 22 O -0.323 6.323 23 C -0.180 4.180 24 C -0.034 4.034 25 O -0.312 6.312 26 C -0.020 4.020 27 N -0.179 5.179 28 H 0.081 0.919 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.217 0.783 32 H 0.186 0.814 33 H 0.258 0.742 34 H 0.255 0.745 35 H 0.092 0.908 36 H 0.122 0.878 37 H 0.296 0.704 38 H 0.108 0.892 39 H 0.135 0.865 40 H 0.124 0.876 41 H 0.105 0.895 42 H 0.116 0.884 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 17.209 -20.701 -5.290 27.435 hybrid contribution 0.969 1.421 0.038 1.720 sum 18.178 -19.281 -5.252 27.014 Atomic orbital electron populations 1.70004 1.07187 1.28650 1.50130 1.25745 0.95852 1.02729 0.94004 0.85296 0.78407 0.78427 0.78249 1.19902 1.19868 1.19625 1.21427 0.93362 0.90971 1.52511 0.92966 1.19323 0.85693 0.81531 0.98082 1.48810 1.23770 1.20364 1.19864 1.23160 1.00539 0.88970 0.96686 1.21687 1.02045 1.06677 1.01824 1.19076 0.90906 0.92930 0.94168 1.41344 1.30382 1.25334 1.31614 1.15675 0.80496 0.79703 0.82666 1.90851 1.65729 1.63077 1.27975 1.44963 1.31923 1.28122 1.33218 1.21305 0.92433 0.86406 0.96385 1.22214 0.93738 0.93276 1.00193 1.23067 0.87607 0.83407 0.71908 1.90715 1.22537 1.83230 1.46121 1.84306 1.48562 1.21564 1.77819 1.23140 1.03183 0.90757 1.00950 1.23686 1.03791 0.93179 0.82770 1.89172 1.70458 1.37278 1.34255 1.23677 0.96026 0.91278 0.91016 1.77246 1.04847 1.17996 1.17778 0.91885 0.96061 0.92406 0.78336 0.81405 0.74216 0.74462 0.90753 0.87826 0.70363 0.89181 0.86507 0.87591 0.89484 0.88400 0.87359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.94 13.29 21.45 0.28 -51.66 16 2 C 0.02 0.93 5.46 84.66 0.46 1.39 16 3 Si 0.97 43.39 29.54 68.60 2.03 45.42 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.54 -30.55 9.23 25.60 0.24 -30.31 16 8 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 9 C 0.27 14.05 6.26 85.63 0.54 14.58 16 10 N -0.35 -16.09 3.67 -351.86 -1.29 -17.38 16 11 C 0.05 2.13 11.44 83.52 0.96 3.09 16 12 C -0.29 -11.15 9.60 22.10 0.21 -10.94 16 13 C 0.28 11.06 8.11 133.31 1.08 12.14 16 14 N -0.64 -18.11 5.46 -321.23 -1.75 -19.86 16 15 C 0.72 18.40 8.53 179.05 1.53 19.93 16 16 O -0.60 -19.37 13.47 -4.01 -0.05 -19.42 16 17 N -0.72 -11.40 4.93 -478.52 -2.36 -13.76 16 18 C 0.16 2.01 4.31 86.38 0.37 2.38 16 19 C -0.09 -1.01 0.72 -51.91 -0.04 -1.04 16 20 C 0.50 7.11 6.90 71.23 0.49 7.60 16 21 O -0.54 -11.25 16.04 21.95 0.35 -10.90 16 22 O -0.51 -4.60 10.77 -51.35 -0.55 -5.15 16 23 C -0.14 -1.33 6.32 31.61 0.20 -1.13 16 24 C 0.04 0.36 7.63 72.49 0.55 0.92 16 25 O -0.39 -5.59 11.65 -148.98 -1.74 -7.33 16 26 C 0.06 0.58 6.35 72.49 0.46 1.04 16 27 N -0.35 -15.88 12.42 -54.44 -0.68 -16.56 16 28 H 0.27 14.32 8.31 -92.71 -0.77 13.54 16 29 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.06 2.91 8.07 -2.39 -0.02 2.89 16 31 H 0.20 6.10 8.06 -2.91 -0.02 6.08 16 32 H 0.17 6.21 5.91 -2.91 -0.02 6.19 16 33 H 0.42 9.50 8.84 -92.71 -0.82 8.68 16 34 H 0.42 4.88 6.14 -92.71 -0.57 4.31 16 35 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.10 1.13 8.08 -2.39 -0.02 1.12 16 37 H 0.43 1.14 9.10 -74.06 -0.67 0.46 16 38 H 0.09 1.18 6.50 -2.39 -0.02 1.17 16 39 H 0.12 0.62 7.73 -2.38 -0.02 0.60 16 40 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.09 0.44 8.14 -2.39 -0.02 0.43 16 42 H 0.10 0.75 7.83 -2.39 -0.02 0.73 16 43 H 0.11 0.96 7.73 -2.39 -0.02 0.94 16 Total: -1.00 -77.66 366.10 0.33 -77.33 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -0.96 Total: 19.63 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: 7.05 Total: 19.65 kcal Atomic # 7 Polarization: -113.42 SS G_CDS: -5.79 Total: -119.22 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -1.99 Total: -42.81 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -77.66 0.33 -77.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601069219.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.153 kcal (2) G-P(sol) polarization free energy of solvation -77.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds