Wall clock time and date at job start Tue Mar 31 2020 20:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86798 * 120.00586 * 2 1 4 4 H 1.48499 * 109.46949 * 275.99792 * 3 2 1 5 5 H 1.48501 * 109.46950 * 35.99311 * 3 2 1 6 6 H 1.48497 * 109.47094 * 155.99586 * 3 2 1 7 7 C 1.38956 * 119.99669 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99581 * 338.60004 * 7 2 1 9 9 N 1.37097 * 119.99940 * 158.60136 * 7 2 1 10 10 C 1.46497 * 120.00089 * 322.19727 * 9 7 2 11 11 C 1.50700 * 109.47366 * 263.24258 * 10 9 7 12 12 O 1.20820 * 120.00083 * 0.02562 * 11 10 9 13 13 O 1.34224 * 119.99812 * 179.97438 * 11 10 9 14 14 C 1.34774 * 119.99850 * 142.20634 * 9 7 2 15 15 O 1.21300 * 120.00109 * 359.97438 * 14 9 7 16 16 C 1.50700 * 120.00025 * 179.97438 * 14 9 7 17 17 C 1.50697 * 109.46976 * 179.97438 * 16 14 9 18 18 N 1.30835 * 125.96255 * 264.99507 * 17 16 14 19 19 C 1.33240 * 109.82786 * 180.02562 * 18 17 16 20 20 C 1.50704 * 125.52609 * 180.02562 * 19 18 17 21 21 C 1.53182 * 109.54176 * 239.55917 * 20 19 18 22 22 C 1.53093 * 109.15904 * 183.15134 * 21 20 19 23 23 O 1.42902 * 109.41626 * 57.60884 * 22 21 20 24 24 C 1.42891 * 114.09890 * 298.84338 * 23 22 21 25 25 C 1.53094 * 109.42117 * 61.15477 * 24 23 22 26 26 N 1.30719 * 108.94977 * 0.02562 * 19 18 17 27 27 N 1.34429 * 125.96311 * 85.03071 * 17 16 14 28 28 H 0.97002 * 126.82250 * 359.97124 * 27 17 16 29 29 H 0.97008 * 119.99845 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.46828 * 23.24459 * 10 9 7 31 31 H 1.08999 * 109.46939 * 143.24180 * 10 9 7 32 32 H 0.96698 * 117.00200 * 180.02562 * 13 11 10 33 33 H 1.09005 * 109.47087 * 59.99570 * 16 14 9 34 34 H 1.08997 * 109.47106 * 299.99417 * 16 14 9 35 35 H 1.08996 * 109.54168 * 359.82588 * 20 19 18 36 36 H 1.08997 * 109.52438 * 303.05447 * 21 20 19 37 37 H 1.09005 * 109.52007 * 63.24935 * 21 20 19 38 38 H 1.08997 * 109.48419 * 297.62305 * 22 21 20 39 39 H 1.09005 * 109.48194 * 177.59469 * 22 21 20 40 40 H 1.09002 * 109.47961 * 301.16875 * 24 23 22 41 41 H 1.09002 * 109.48455 * 181.13888 * 24 23 22 42 42 H 1.08995 * 109.52471 * 182.48417 * 25 24 23 43 43 H 1.09005 * 109.56965 * 62.32310 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.3690 2.1194 -1.3924 5 1 1.5148 2.6127 0.8228 6 1 3.6033 1.4067 0.5695 7 6 2.0088 -1.2034 -0.0005 8 1 1.5245 -2.1066 0.3404 9 7 3.3089 -1.2442 -0.4338 10 6 3.7279 -0.4223 -1.5717 11 6 3.7006 -1.2532 -2.8287 12 8 3.3650 -2.4128 -2.7791 13 8 4.0480 -0.7047 -4.0034 14 6 4.2014 -2.0406 0.1872 15 8 3.8545 -2.7209 1.1297 16 6 5.6303 -2.0859 -0.2893 17 6 6.4154 -3.0453 0.5675 18 7 7.1359 -2.7291 1.6128 19 6 7.6911 -3.8255 2.1275 20 6 8.5894 -3.8671 3.3369 21 6 9.9516 -4.4470 2.9437 22 6 10.8296 -4.5586 4.1928 23 8 10.1715 -5.3737 5.1648 24 6 8.9143 -4.8566 5.6051 25 6 7.9592 -4.7569 4.4128 26 7 7.3304 -4.8593 1.4134 27 7 6.4981 -4.3754 0.3909 28 1 6.0684 -4.8973 -0.3048 29 1 -0.4850 0.8401 0.0004 30 1 3.0476 0.4225 -1.6797 31 1 4.7397 -0.0545 -1.4012 32 1 4.0145 -1.2770 -4.7822 33 1 6.0695 -1.0909 -0.2161 34 1 5.6570 -2.4194 -1.3267 35 1 8.7203 -2.8584 3.7286 36 1 9.8139 -5.4356 2.5058 37 1 10.4316 -3.7898 2.2185 38 1 11.0003 -3.5650 4.6072 39 1 11.7851 -5.0104 3.9264 40 1 9.0599 -3.8668 6.0380 41 1 8.4899 -5.5230 6.3560 42 1 7.0145 -4.3214 4.7382 43 1 7.7804 -5.7514 4.0040 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601070167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:12 Heat of formation + Delta-G solvation = -74.104868 kcal Electronic energy + Delta-G solvation = -29590.503342 eV Core-core repulsion = 25252.265696 eV Total energy + Delta-G solvation = -4338.237646 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.07803 -40.18612 -39.39305 -38.66049 -35.93207 -35.09671 -34.74128 -32.55653 -32.08562 -31.83223 -31.28964 -28.69488 -28.20665 -25.75836 -24.94853 -23.71583 -22.10119 -21.86629 -20.82311 -19.74219 -19.23204 -17.97212 -17.63778 -17.49485 -16.85374 -16.38842 -16.24173 -16.16506 -15.74719 -15.12910 -14.98208 -14.95641 -14.70452 -14.41111 -14.21140 -13.86048 -13.45805 -13.06395 -12.89558 -12.86924 -12.66039 -12.55610 -12.11863 -12.04934 -11.68056 -11.50128 -11.46850 -11.29499 -11.08988 -11.03752 -10.78042 -10.49910 -10.29937 -10.10434 -9.88856 -9.85513 -9.77099 -9.44895 -9.30732 -8.83948 -8.11234 -6.56993 -4.18788 1.72625 2.46843 2.74893 2.84516 2.93880 2.98345 3.10516 3.13303 3.56848 3.67210 3.84468 3.95427 4.17230 4.51573 4.62604 4.65173 4.76928 4.82388 4.90198 5.04199 5.07026 5.13838 5.18147 5.23969 5.37751 5.45309 5.46773 5.48995 5.54020 5.62216 5.69546 5.69855 5.84895 5.98798 6.18874 6.37315 6.57117 6.69355 6.99699 7.15432 7.27314 8.00260 8.14196 8.24064 8.25214 8.70460 9.05294 9.40049 10.54309 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017026 B = 0.002854 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.158326 B = 9807.250484 C =10587.701797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.061 3.939 3 Si 0.860 3.140 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.255 1.255 7 C -0.317 4.317 8 H 0.110 0.890 9 N -0.445 5.445 10 C 0.093 3.907 11 C 0.456 3.544 12 O -0.495 6.495 13 O -0.523 6.523 14 C 0.485 3.515 15 O -0.536 6.536 16 C -0.074 4.074 17 C 0.326 3.674 18 N -0.533 5.533 19 C 0.230 3.770 20 C 0.009 3.991 21 C -0.146 4.146 22 C 0.063 3.937 23 O -0.384 6.384 24 C 0.064 3.936 25 C -0.149 4.149 26 N -0.312 5.312 27 N -0.471 5.471 28 H 0.440 0.560 29 H 0.277 0.723 30 H 0.118 0.882 31 H 0.108 0.892 32 H 0.403 0.597 33 H 0.124 0.876 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.053 0.947 39 H 0.095 0.905 40 H 0.053 0.947 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.269 -1.866 -0.939 18.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.146 4.146 3 Si 0.686 3.314 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.179 1.179 7 C -0.444 4.444 8 H 0.127 0.873 9 N -0.168 5.168 10 C -0.033 4.033 11 C 0.296 3.704 12 O -0.381 6.381 13 O -0.335 6.335 14 C 0.272 3.728 15 O -0.415 6.415 16 C -0.117 4.117 17 C 0.047 3.953 18 N -0.262 5.262 19 C -0.053 4.053 20 C -0.012 4.012 21 C -0.185 4.185 22 C -0.013 4.013 23 O -0.303 6.303 24 C -0.013 4.013 25 C -0.187 4.187 26 N -0.141 5.141 27 N -0.188 5.188 28 H 0.286 0.714 29 H 0.088 0.912 30 H 0.136 0.864 31 H 0.126 0.874 32 H 0.261 0.739 33 H 0.142 0.858 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.113 0.887 40 H 0.072 0.928 41 H 0.115 0.885 42 H 0.098 0.902 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 18.164 -2.762 0.324 18.375 hybrid contribution -0.583 0.700 -1.586 1.829 sum 17.580 -2.061 -1.262 17.746 Atomic orbital electron populations 1.69739 1.06217 1.28266 1.44507 1.25400 0.95261 0.98265 0.95706 0.87187 0.81869 0.83963 0.78396 1.19636 1.20377 1.17890 1.19041 0.84181 0.97052 1.44128 0.87257 1.43283 1.10107 1.40145 1.23225 1.21715 1.03619 0.94872 0.83130 1.24619 0.73010 0.87600 0.85182 1.90718 1.42396 1.18523 1.86476 1.84579 1.81389 1.48899 1.18640 1.19681 0.84942 0.84117 0.84097 1.90651 1.79301 1.43094 1.28482 1.20399 0.94400 0.99071 0.97831 1.23352 0.94272 0.84104 0.93603 1.70310 1.15644 1.30372 1.09825 1.23908 0.97775 0.86070 0.97509 1.19495 0.91601 1.01173 0.88937 1.22242 0.94715 1.02731 0.98792 1.22573 0.95412 0.95358 0.88004 1.87927 1.33835 1.49391 1.59104 1.22590 0.83643 0.99525 0.95537 1.22254 0.99547 1.01166 0.95761 1.77854 1.12565 1.21974 1.01745 1.47850 1.38654 1.06906 1.25365 0.71417 0.91199 0.86429 0.87441 0.73913 0.85790 0.87847 0.88416 0.90168 0.90607 0.92905 0.88661 0.92836 0.88508 0.90216 0.90145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.60 13.96 55.50 0.77 -22.82 16 2 C 0.06 1.59 5.28 -17.47 -0.09 1.50 16 3 Si 0.86 18.38 24.97 -169.99 -4.24 14.13 16 4 H -0.27 -5.21 6.71 56.52 0.38 -4.83 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.32 -8.58 9.36 -14.93 -0.14 -8.72 16 8 H 0.11 3.40 7.92 -52.48 -0.42 2.99 16 9 N -0.45 -10.03 1.74 -116.09 -0.20 -10.24 16 10 C 0.09 1.65 4.33 -5.20 -0.02 1.63 16 11 C 0.46 7.59 7.63 36.01 0.27 7.86 16 12 O -0.50 -9.87 17.00 -18.75 -0.32 -10.19 16 13 O -0.52 -6.44 13.42 -39.24 -0.53 -6.96 16 14 C 0.49 10.62 7.37 -10.99 -0.08 10.54 16 15 O -0.54 -14.07 15.91 5.54 0.09 -13.99 16 16 C -0.07 -1.19 4.94 -29.04 -0.14 -1.33 16 17 C 0.33 5.62 6.73 -155.69 -1.05 4.58 16 18 N -0.53 -9.58 11.19 -8.16 -0.09 -9.67 16 19 C 0.23 3.73 6.66 -156.85 -1.04 2.69 16 20 C 0.01 0.11 2.75 -91.58 -0.25 -0.14 16 21 C -0.15 -1.51 5.41 -26.59 -0.14 -1.65 16 22 C 0.06 0.56 6.84 37.21 0.25 0.81 16 23 O -0.38 -4.18 10.76 -35.23 -0.38 -4.56 16 24 C 0.06 0.62 6.84 37.21 0.25 0.87 16 25 C -0.15 -1.75 5.41 -26.59 -0.14 -1.89 16 26 N -0.31 -5.18 12.80 32.42 0.41 -4.77 16 27 N -0.47 -7.58 7.45 32.62 0.24 -7.34 16 28 H 0.44 5.95 8.96 -182.34 -1.63 4.32 16 29 H 0.28 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.12 2.21 3.61 -51.93 -0.19 2.02 16 31 H 0.11 1.44 6.73 -51.93 -0.35 1.09 16 32 H 0.40 3.13 9.10 45.56 0.41 3.54 16 33 H 0.12 1.66 7.42 -51.93 -0.39 1.27 16 34 H 0.10 1.37 7.43 -51.93 -0.39 0.99 16 35 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 362.42 15.07 5.46 5.46 Total: -1.00 -36.21 362.42 -7.01 -43.23 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -5.91 Total: 10.97 kcal Atomic # 6 Polarization: 19.07 SS G_CDS: -2.33 Total: 16.74 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: 1.14 Total: -54.84 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -1.14 Total: -35.70 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -4.24 Total: 14.13 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.21 -7.01 -43.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.878 kcal (2) G-P(sol) polarization free energy of solvation -36.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds