Wall clock time and date at job start Tue Mar 31 2020 20:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86798 * 120.00586 * 2 1 4 4 H 1.48499 * 109.46949 * 275.99792 * 3 2 1 5 5 H 1.48501 * 109.46950 * 35.99311 * 3 2 1 6 6 H 1.48497 * 109.47094 * 155.99586 * 3 2 1 7 7 C 1.38956 * 119.99669 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99581 * 338.60004 * 7 2 1 9 9 N 1.37097 * 119.99940 * 158.60136 * 7 2 1 10 10 C 1.46497 * 120.00089 * 322.19727 * 9 7 2 11 11 C 1.50700 * 109.47366 * 263.24258 * 10 9 7 12 12 O 1.20820 * 120.00083 * 0.02562 * 11 10 9 13 13 O 1.34224 * 119.99812 * 179.97438 * 11 10 9 14 14 C 1.34774 * 119.99850 * 142.20634 * 9 7 2 15 15 O 1.21300 * 120.00109 * 359.97438 * 14 9 7 16 16 C 1.50700 * 120.00025 * 179.97438 * 14 9 7 17 17 C 1.50697 * 109.46976 * 179.97438 * 16 14 9 18 18 N 1.30835 * 125.96255 * 264.99507 * 17 16 14 19 19 C 1.33240 * 109.82786 * 180.02562 * 18 17 16 20 20 C 1.50704 * 125.52609 * 180.02562 * 19 18 17 21 21 C 1.53182 * 109.54176 * 239.55917 * 20 19 18 22 22 C 1.53093 * 109.15904 * 183.15134 * 21 20 19 23 23 O 1.42902 * 109.41626 * 57.60884 * 22 21 20 24 24 C 1.42891 * 114.09890 * 298.84338 * 23 22 21 25 25 C 1.53094 * 109.42117 * 61.15477 * 24 23 22 26 26 N 1.30719 * 108.94977 * 0.02562 * 19 18 17 27 27 N 1.34429 * 125.96311 * 85.03071 * 17 16 14 28 28 H 0.97002 * 126.82250 * 359.97124 * 27 17 16 29 29 H 0.97008 * 119.99845 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.46828 * 23.24459 * 10 9 7 31 31 H 1.08999 * 109.46939 * 143.24180 * 10 9 7 32 32 H 0.96698 * 117.00200 * 180.02562 * 13 11 10 33 33 H 1.09005 * 109.47087 * 59.99570 * 16 14 9 34 34 H 1.08997 * 109.47106 * 299.99417 * 16 14 9 35 35 H 1.08996 * 109.54168 * 359.82588 * 20 19 18 36 36 H 1.08997 * 109.52438 * 303.05447 * 21 20 19 37 37 H 1.09005 * 109.52007 * 63.24935 * 21 20 19 38 38 H 1.08997 * 109.48419 * 297.62305 * 22 21 20 39 39 H 1.09005 * 109.48194 * 177.59469 * 22 21 20 40 40 H 1.09002 * 109.47961 * 301.16875 * 24 23 22 41 41 H 1.09002 * 109.48455 * 181.13888 * 24 23 22 42 42 H 1.08995 * 109.52471 * 182.48417 * 25 24 23 43 43 H 1.09005 * 109.56965 * 62.32310 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.3690 2.1194 -1.3924 5 1 1.5148 2.6127 0.8228 6 1 3.6033 1.4067 0.5695 7 6 2.0088 -1.2034 -0.0005 8 1 1.5245 -2.1066 0.3404 9 7 3.3089 -1.2442 -0.4338 10 6 3.7279 -0.4223 -1.5717 11 6 3.7006 -1.2532 -2.8287 12 8 3.3650 -2.4128 -2.7791 13 8 4.0480 -0.7047 -4.0034 14 6 4.2014 -2.0406 0.1872 15 8 3.8545 -2.7209 1.1297 16 6 5.6303 -2.0859 -0.2893 17 6 6.4154 -3.0453 0.5675 18 7 7.1359 -2.7291 1.6128 19 6 7.6911 -3.8255 2.1275 20 6 8.5894 -3.8671 3.3369 21 6 9.9516 -4.4470 2.9437 22 6 10.8296 -4.5586 4.1928 23 8 10.1715 -5.3737 5.1648 24 6 8.9143 -4.8566 5.6051 25 6 7.9592 -4.7569 4.4128 26 7 7.3304 -4.8593 1.4134 27 7 6.4981 -4.3754 0.3909 28 1 6.0684 -4.8973 -0.3048 29 1 -0.4850 0.8401 0.0004 30 1 3.0476 0.4225 -1.6797 31 1 4.7397 -0.0545 -1.4012 32 1 4.0145 -1.2770 -4.7822 33 1 6.0695 -1.0909 -0.2161 34 1 5.6570 -2.4194 -1.3267 35 1 8.7203 -2.8584 3.7286 36 1 9.8139 -5.4356 2.5058 37 1 10.4316 -3.7898 2.2185 38 1 11.0003 -3.5650 4.6072 39 1 11.7851 -5.0104 3.9264 40 1 9.0599 -3.8668 6.0380 41 1 8.4899 -5.5230 6.3560 42 1 7.0145 -4.3214 4.7382 43 1 7.7804 -5.7514 4.0040 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601070167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:11 Heat of formation + Delta-G solvation = -103.515027 kcal Electronic energy + Delta-G solvation = -29591.778662 eV Core-core repulsion = 25252.265696 eV Total energy + Delta-G solvation = -4339.512967 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.34054 -41.58736 -40.33310 -40.11390 -37.27298 -36.68284 -35.79420 -34.35493 -33.49223 -33.10057 -32.07454 -30.10471 -29.67838 -26.81118 -26.66594 -24.51850 -23.39150 -23.10645 -22.04147 -20.94678 -20.63332 -19.25123 -19.22391 -18.92961 -18.42147 -17.62252 -17.27955 -17.21655 -16.95743 -16.59999 -16.31700 -16.05195 -15.82263 -15.67441 -15.50063 -14.98061 -14.72674 -14.63355 -14.31636 -14.18797 -14.01353 -13.63116 -13.53687 -13.32745 -13.00998 -12.77698 -12.55512 -12.39358 -12.32989 -12.31275 -11.96763 -11.95404 -11.69912 -11.33003 -11.18769 -11.15701 -11.09723 -10.81305 -10.56648 -10.44659 -9.97347 -8.54937 -6.24413 0.43389 1.15435 1.20613 1.35587 1.49791 1.53038 1.59141 1.70445 2.05751 2.18199 2.52071 2.79149 2.94478 2.99908 3.41769 3.47292 3.65985 3.80443 3.83321 3.92814 4.02093 4.08975 4.11503 4.27778 4.31311 4.36971 4.46773 4.51254 4.62264 4.72839 4.79050 4.85683 5.02988 5.08640 5.14315 5.26298 5.37577 5.41214 5.63069 5.95214 5.99710 6.26922 6.35584 6.79830 6.97768 7.00286 7.12759 7.61364 8.62065 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017026 B = 0.002854 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.158326 B = 9807.250484 C =10587.701797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.010 3.990 3 Si 0.934 3.066 4 H -0.224 1.224 5 H -0.286 1.286 6 H -0.235 1.235 7 C -0.337 4.337 8 H 0.038 0.962 9 N -0.454 5.454 10 C 0.082 3.918 11 C 0.470 3.530 12 O -0.538 6.538 13 O -0.501 6.501 14 C 0.479 3.521 15 O -0.596 6.596 16 C -0.059 4.059 17 C 0.314 3.686 18 N -0.552 5.552 19 C 0.224 3.776 20 C 0.006 3.994 21 C -0.137 4.137 22 C 0.063 3.937 23 O -0.400 6.400 24 C 0.068 3.932 25 C -0.145 4.145 26 N -0.327 5.327 27 N -0.471 5.471 28 H 0.448 0.552 29 H 0.283 0.717 30 H 0.115 0.885 31 H 0.165 0.835 32 H 0.428 0.572 33 H 0.163 0.837 34 H 0.136 0.864 35 H 0.107 0.893 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.114 0.886 40 H 0.071 0.929 41 H 0.108 0.892 42 H 0.066 0.934 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.858 0.729 -2.275 21.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.193 4.193 3 Si 0.754 3.246 4 H -0.148 1.148 5 H -0.212 1.212 6 H -0.158 1.158 7 C -0.465 4.465 8 H 0.056 0.944 9 N -0.176 5.176 10 C -0.043 4.043 11 C 0.311 3.689 12 O -0.427 6.427 13 O -0.315 6.315 14 C 0.268 3.732 15 O -0.479 6.479 16 C -0.101 4.101 17 C 0.034 3.966 18 N -0.282 5.282 19 C -0.058 4.058 20 C -0.015 4.015 21 C -0.176 4.176 22 C -0.013 4.013 23 O -0.319 6.319 24 C -0.008 4.008 25 C -0.184 4.184 26 N -0.157 5.157 27 N -0.188 5.188 28 H 0.295 0.705 29 H 0.093 0.907 30 H 0.132 0.868 31 H 0.182 0.818 32 H 0.290 0.710 33 H 0.180 0.820 34 H 0.154 0.846 35 H 0.125 0.875 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.132 0.868 40 H 0.089 0.911 41 H 0.126 0.874 42 H 0.085 0.915 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 21.779 -0.164 -1.097 21.808 hybrid contribution -1.764 -0.209 -1.235 2.164 sum 20.015 -0.373 -2.332 20.154 Atomic orbital electron populations 1.69876 1.08532 1.29819 1.46144 1.26312 0.96000 1.02572 0.94438 0.86053 0.80572 0.77181 0.80833 1.14831 1.21223 1.15806 1.18528 0.86445 0.95378 1.46136 0.94373 1.43241 1.08440 1.40892 1.25038 1.21933 1.06413 0.93807 0.82101 1.24135 0.72145 0.86539 0.86082 1.90736 1.44451 1.20363 1.87199 1.84484 1.80130 1.48638 1.18216 1.20636 0.87059 0.82429 0.83091 1.90619 1.80857 1.45277 1.31139 1.20393 0.89714 1.01124 0.98885 1.23605 0.94486 0.84601 0.93881 1.70307 1.16354 1.31290 1.10200 1.24612 0.97660 0.85459 0.98118 1.19720 0.92105 1.01950 0.87721 1.22186 0.93761 1.01797 0.99863 1.22734 0.95432 0.96350 0.86817 1.87912 1.34049 1.50388 1.59546 1.22627 0.82848 1.00812 0.94560 1.22210 0.99731 0.99850 0.96608 1.77827 1.13109 1.22579 1.02156 1.47880 1.38514 1.06936 1.25477 0.70472 0.90717 0.86799 0.81758 0.71037 0.81992 0.84569 0.87508 0.91748 0.89619 0.91117 0.86783 0.91110 0.87411 0.91513 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.40 13.96 21.66 0.30 -52.10 16 2 C 0.01 0.51 5.28 84.93 0.45 0.96 16 3 Si 0.93 36.51 24.97 68.60 1.71 38.22 16 4 H -0.22 -7.17 6.71 99.48 0.67 -6.51 16 5 H -0.29 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.24 -8.41 7.11 99.48 0.71 -7.70 16 7 C -0.34 -19.15 9.36 84.04 0.79 -18.37 16 8 H 0.04 2.63 7.92 -2.91 -0.02 2.61 16 9 N -0.45 -20.33 1.74 -639.59 -1.11 -21.45 16 10 C 0.08 2.62 4.33 85.63 0.37 2.99 16 11 C 0.47 14.16 7.63 71.24 0.54 14.70 16 12 O -0.54 -20.89 17.00 21.98 0.37 -20.51 16 13 O -0.50 -9.94 13.42 -51.36 -0.69 -10.63 16 14 C 0.48 20.95 7.37 87.66 0.65 21.60 16 15 O -0.60 -32.74 15.91 -3.09 -0.05 -32.79 16 16 C -0.06 -1.74 4.94 29.10 0.14 -1.60 16 17 C 0.31 10.47 6.73 138.22 0.93 11.40 16 18 N -0.55 -19.28 11.19 -179.72 -2.01 -21.30 16 19 C 0.22 7.19 6.66 138.63 0.92 8.11 16 20 C 0.01 0.15 2.75 -11.42 -0.03 0.11 16 21 C -0.14 -2.63 5.41 30.69 0.17 -2.47 16 22 C 0.06 0.96 6.84 72.01 0.49 1.45 16 23 O -0.40 -8.00 10.76 -148.98 -1.60 -9.61 16 24 C 0.07 1.22 6.84 72.01 0.49 1.72 16 25 C -0.15 -3.41 5.41 30.68 0.17 -3.25 16 26 N -0.33 -10.93 12.80 -51.33 -0.66 -11.58 16 27 N -0.47 -15.06 7.45 -50.71 -0.38 -15.44 16 28 H 0.45 12.16 8.96 -213.10 -1.91 10.25 16 29 H 0.28 14.83 8.31 -92.70 -0.77 14.06 16 30 H 0.11 3.79 3.61 -2.39 -0.01 3.78 16 31 H 0.17 3.34 6.73 -2.39 -0.02 3.32 16 32 H 0.43 4.68 9.10 -74.06 -0.67 4.01 16 33 H 0.16 3.52 7.42 -2.38 -0.02 3.50 16 34 H 0.14 3.12 7.43 -2.39 -0.02 3.11 16 35 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.09 1.46 8.14 -2.38 -0.02 1.45 16 38 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 Total: -1.00 -87.28 362.42 0.43 -86.84 By element: Atomic # 1 Polarization: 34.50 SS G_CDS: -1.53 Total: 32.97 kcal Atomic # 6 Polarization: 31.29 SS G_CDS: 6.08 Total: 37.37 kcal Atomic # 7 Polarization: -118.00 SS G_CDS: -3.86 Total: -121.86 kcal Atomic # 8 Polarization: -71.57 SS G_CDS: -1.97 Total: -73.54 kcal Atomic # 14 Polarization: 36.51 SS G_CDS: 1.71 Total: 38.22 kcal Total: -87.28 0.43 -86.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601070167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.673 kcal (2) G-P(sol) polarization free energy of solvation -87.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds