Wall clock time and date at job start Tue Mar 31 2020 20:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31284 * 1 3 3 Si 1.86801 * 120.00073 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00043 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99994 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99794 * 3 2 1 7 7 C 1.39003 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00346 * 180.02562 * 7 2 1 9 9 N 1.37301 * 119.99972 * 359.72316 * 7 2 1 10 10 C 1.36438 * 126.05650 * 180.27942 * 9 7 2 11 11 C 1.35786 * 107.49868 * 179.97438 * 10 9 7 12 12 N 1.40291 * 126.10045 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99920 * 180.02562 * 12 11 10 14 14 O 1.21401 * 119.99972 * 359.97438 * 13 12 11 15 15 C 1.49310 * 119.99824 * 179.97438 * 13 12 11 16 16 O 1.21365 * 119.99963 * 359.97438 * 15 13 12 17 17 N 1.34769 * 120.00069 * 179.97438 * 15 13 12 18 18 C 1.46501 * 120.00323 * 179.97438 * 17 15 13 19 19 C 1.52998 * 109.47467 * 180.02562 * 18 17 15 20 20 C 1.53002 * 109.47353 * 180.02562 * 19 18 17 21 21 C 1.53003 * 109.46858 * 179.97438 * 20 19 18 22 22 C 1.53003 * 109.46485 * 179.97438 * 21 20 19 23 23 C 1.50706 * 109.46707 * 180.02562 * 22 21 20 24 24 O 1.20822 * 120.00229 * 0.02562 * 23 22 21 25 25 O 1.34232 * 119.99833 * 179.97438 * 23 22 21 26 26 C 1.40728 * 107.79917 * 359.97438 * 11 10 9 27 27 N 1.30879 * 108.37511 * 359.76049 * 26 11 10 28 28 H 0.97004 * 119.99619 * 0.02562 * 1 2 3 29 29 H 1.08006 * 126.25118 * 359.92667 * 10 9 7 30 30 H 0.97005 * 119.99974 * 359.97438 * 12 11 10 31 31 H 0.97005 * 119.99860 * 359.97438 * 17 15 13 32 32 H 1.08996 * 109.47396 * 300.00468 * 18 17 15 33 33 H 1.09009 * 109.46944 * 60.00485 * 18 17 15 34 34 H 1.09004 * 109.46929 * 300.00237 * 19 18 17 35 35 H 1.09001 * 109.46910 * 59.99956 * 19 18 17 36 36 H 1.09001 * 109.46557 * 299.99905 * 20 19 18 37 37 H 1.08998 * 109.46887 * 59.99918 * 20 19 18 38 38 H 1.09001 * 109.47464 * 299.99355 * 21 20 19 39 39 H 1.08998 * 109.47433 * 60.00259 * 21 20 19 40 40 H 1.09004 * 109.47244 * 299.99756 * 22 21 20 41 41 H 1.09001 * 109.47575 * 60.00075 * 22 21 20 42 42 H 0.96695 * 117.00055 * 179.97438 * 25 23 22 43 43 H 1.07994 * 125.80747 * 179.97438 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 2.4944 2.0464 -1.4001 5 1 1.4443 2.6526 0.7000 6 1 3.5444 1.4402 0.7001 7 6 2.0079 -1.2038 -0.0005 8 1 3.0879 -1.2039 -0.0001 9 7 1.3214 -2.3929 0.0047 10 6 1.8751 -3.6398 0.0102 11 6 0.8572 -4.5385 0.0147 12 7 0.9879 -5.9353 0.0205 13 6 -0.1115 -6.7150 0.0241 14 8 -1.2149 -6.2085 0.0227 15 6 0.0275 -8.2016 0.0297 16 8 1.1305 -8.7079 0.0307 17 7 -1.0718 -8.9812 0.0338 18 6 -0.9354 -10.4398 0.0388 19 6 -2.3241 -11.0819 0.0420 20 6 -2.1817 -12.6053 0.0479 21 6 -3.5705 -13.2473 0.0518 22 6 -3.4280 -14.7707 0.0570 23 6 -4.7959 -15.4031 0.0602 24 8 -5.7834 -14.7069 0.0580 25 8 -4.9172 -16.7399 0.0644 26 6 -0.3521 -3.8188 0.0124 27 7 -0.0714 -2.5405 0.0120 28 1 -0.4850 0.8401 -0.0004 29 1 2.9303 -3.8700 0.0101 30 1 1.8695 -6.3400 0.0213 31 1 -1.9534 -8.5765 0.0334 32 1 -0.3910 -10.7569 -0.8507 33 1 -0.3890 -10.7506 0.9293 34 1 -2.8689 -10.7649 0.9313 35 1 -2.8702 -10.7711 -0.8487 36 1 -1.6368 -12.9226 -0.8412 37 1 -1.6358 -12.9157 0.9387 38 1 -4.1150 -12.9300 0.9411 39 1 -4.1168 -12.9369 -0.8389 40 1 -2.8836 -15.0877 -0.8326 41 1 -2.8815 -15.0815 0.9474 42 1 -5.8149 -17.0993 0.0667 43 1 -1.3429 -4.2483 0.0145 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601078834.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:16 Heat of formation + Delta-G solvation = -95.723411 kcal Electronic energy + Delta-G solvation = -26864.193311 eV Core-core repulsion = 22525.018215 eV Total energy + Delta-G solvation = -4339.175097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.73964 -40.48788 -39.50726 -38.01503 -37.05184 -36.47928 -34.98610 -34.15301 -33.16991 -31.66420 -30.32791 -28.22324 -27.58915 -25.41698 -24.31038 -22.90905 -21.81700 -21.18142 -20.99977 -20.21636 -19.46836 -18.55017 -18.15047 -17.44644 -16.98210 -16.95739 -16.33710 -16.19920 -15.54888 -15.45105 -15.20535 -15.07538 -14.49803 -14.11747 -13.99653 -13.71397 -13.63480 -13.37847 -13.11231 -12.99166 -12.66189 -12.48065 -12.03603 -11.83828 -11.74362 -11.59882 -11.57244 -11.52987 -11.29364 -11.23559 -11.06503 -11.03805 -10.86195 -10.55837 -10.29756 -9.31531 -9.23213 -9.14065 -8.88122 -8.13401 -6.78544 -6.60794 -4.28228 1.64878 1.70229 2.48335 2.62974 2.93128 3.03730 3.08631 3.32394 3.71271 3.74916 3.95259 4.19805 4.33648 4.35349 4.36727 4.58909 4.64200 4.73321 4.84624 4.97849 5.01723 5.05271 5.08404 5.16369 5.33522 5.38023 5.48312 5.66855 5.80524 5.85948 6.00444 6.16552 6.19741 6.35496 6.74950 6.88353 6.91070 7.15814 7.20454 7.37488 7.75502 7.84873 8.09495 8.17972 8.48139 8.69030 9.30748 9.59357 10.34985 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.044174 B = 0.001357 C = 0.001319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.705924 B =20629.127225 C =21226.472821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.047 3.953 3 Si 0.936 3.064 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.322 4.322 8 H 0.118 0.882 9 N -0.138 5.138 10 C -0.077 4.077 11 C -0.071 4.071 12 N -0.583 5.583 13 C 0.483 3.517 14 O -0.523 6.523 15 C 0.515 3.485 16 O -0.529 6.529 17 N -0.706 5.706 18 C 0.118 3.882 19 C -0.134 4.134 20 C -0.115 4.115 21 C -0.111 4.111 22 C -0.114 4.114 23 C 0.476 3.524 24 O -0.515 6.515 25 O -0.520 6.520 26 C -0.026 4.026 27 N -0.261 5.261 28 H 0.276 0.724 29 H 0.149 0.851 30 H 0.409 0.591 31 H 0.414 0.586 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.410 0.590 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.100 -27.161 0.114 27.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.171 4.171 3 Si 0.760 3.240 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.455 4.455 8 H 0.136 0.864 9 N 0.095 4.905 10 C -0.229 4.229 11 C -0.177 4.177 12 N -0.226 5.226 13 C 0.264 3.736 14 O -0.401 6.401 15 C 0.296 3.704 16 O -0.405 6.405 17 N -0.360 5.360 18 C -0.006 4.006 19 C -0.172 4.172 20 C -0.153 4.153 21 C -0.149 4.149 22 C -0.152 4.152 23 C 0.318 3.682 24 O -0.403 6.403 25 O -0.333 6.333 26 C -0.202 4.202 27 N -0.092 5.092 28 H 0.087 0.913 29 H 0.167 0.833 30 H 0.244 0.756 31 H 0.250 0.750 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.269 0.731 43 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -4.638 -25.468 0.117 25.887 hybrid contribution 0.210 -0.529 0.000 0.569 sum -4.428 -25.996 0.117 26.371 Atomic orbital electron populations 1.70210 1.06179 1.28143 1.34829 1.25664 0.95725 1.00352 0.95360 0.85804 0.79412 0.79784 0.79032 1.19523 1.20034 1.18738 1.19933 0.91778 0.80479 1.53268 0.86424 1.44564 1.04087 1.03360 1.38450 1.21308 0.96982 0.85209 1.19389 1.17266 0.94649 0.80648 1.25090 1.42146 1.08625 1.04588 1.67203 1.19654 0.85307 0.86903 0.81761 1.90655 1.25442 1.74298 1.49706 1.20290 0.84695 0.88320 0.77088 1.90730 1.25610 1.75769 1.48432 1.45725 1.09775 1.06725 1.73761 1.21448 0.97609 0.78683 1.02812 1.21807 0.96381 0.95342 1.03655 1.21482 0.96597 0.94233 1.03035 1.21465 0.97748 0.91407 1.04256 1.21429 0.91197 0.96422 1.06138 1.23652 0.92934 0.80045 0.71530 1.90753 1.40673 1.63392 1.45467 1.84542 1.38934 1.24152 1.85631 1.24145 0.97938 0.90747 1.07342 1.78264 0.90105 1.14987 1.25818 0.91348 0.83328 0.75588 0.74955 0.91038 0.91033 0.90719 0.90712 0.91131 0.91135 0.90693 0.90700 0.87458 0.87455 0.73079 0.80557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.13 11.81 55.50 0.66 -20.48 16 2 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 3 Si 0.94 18.65 29.55 -169.99 -5.02 13.63 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 7 C -0.32 -8.42 10.25 -14.82 -0.15 -8.57 16 8 H 0.12 2.74 7.83 -52.49 -0.41 2.33 16 9 N -0.14 -3.75 3.73 -11.40 -0.04 -3.79 16 10 C -0.08 -1.82 11.50 -16.38 -0.19 -2.01 16 11 C -0.07 -1.64 6.90 -83.92 -0.58 -2.21 16 12 N -0.58 -11.01 5.45 -10.45 -0.06 -11.06 16 13 C 0.48 8.70 7.85 -11.65 -0.09 8.61 16 14 O -0.52 -10.54 13.62 5.45 0.07 -10.47 16 15 C 0.51 7.69 7.88 -11.65 -0.09 7.59 16 16 O -0.53 -8.64 16.47 5.48 0.09 -8.55 16 17 N -0.71 -7.99 5.55 -60.78 -0.34 -8.33 16 18 C 0.12 0.98 5.67 -4.04 -0.02 0.96 16 19 C -0.13 -0.77 5.33 -26.73 -0.14 -0.92 16 20 C -0.12 -0.48 5.21 -26.73 -0.14 -0.62 16 21 C -0.11 -0.53 4.51 -26.73 -0.12 -0.65 16 22 C -0.11 -0.42 5.81 -27.88 -0.16 -0.58 16 23 C 0.48 2.94 8.33 36.01 0.30 3.24 16 24 O -0.51 -5.09 16.74 -18.75 -0.31 -5.40 16 25 O -0.52 -2.27 13.42 -39.26 -0.53 -2.80 16 26 C -0.03 -0.67 10.85 -17.02 -0.18 -0.86 16 27 N -0.26 -7.50 10.39 30.81 0.32 -7.17 16 28 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.15 2.92 8.06 -52.48 -0.42 2.50 16 30 H 0.41 6.65 8.29 -40.82 -0.34 6.31 16 31 H 0.41 4.33 7.94 -40.82 -0.32 4.01 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.61 8.14 -51.92 -0.42 0.18 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 39 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 40 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.41 0.29 9.10 45.56 0.41 0.71 16 43 H 0.18 4.44 5.92 -52.49 -0.31 4.13 16 LS Contribution 380.43 15.07 5.73 5.73 Total: -1.00 -36.06 380.43 -5.85 -41.91 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -4.75 Total: 11.72 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -1.67 Total: 5.07 kcal Atomic # 7 Polarization: -51.37 SS G_CDS: 0.54 Total: -50.84 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.68 Total: -27.22 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.02 Total: 13.63 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.06 -5.85 -41.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601078834.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.815 kcal (2) G-P(sol) polarization free energy of solvation -36.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds