Wall clock time and date at job start Tue Mar 31 2020 20:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31284 * 1 3 3 Si 1.86801 * 120.00073 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00043 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99994 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99794 * 3 2 1 7 7 C 1.39003 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00346 * 180.02562 * 7 2 1 9 9 N 1.37301 * 119.99972 * 359.72316 * 7 2 1 10 10 C 1.36438 * 126.05650 * 180.27942 * 9 7 2 11 11 C 1.35786 * 107.49868 * 179.97438 * 10 9 7 12 12 N 1.40291 * 126.10045 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99920 * 180.02562 * 12 11 10 14 14 O 1.21401 * 119.99972 * 359.97438 * 13 12 11 15 15 C 1.49310 * 119.99824 * 179.97438 * 13 12 11 16 16 O 1.21365 * 119.99963 * 359.97438 * 15 13 12 17 17 N 1.34769 * 120.00069 * 179.97438 * 15 13 12 18 18 C 1.46501 * 120.00323 * 179.97438 * 17 15 13 19 19 C 1.52998 * 109.47467 * 180.02562 * 18 17 15 20 20 C 1.53002 * 109.47353 * 180.02562 * 19 18 17 21 21 C 1.53003 * 109.46858 * 179.97438 * 20 19 18 22 22 C 1.53003 * 109.46485 * 179.97438 * 21 20 19 23 23 C 1.50706 * 109.46707 * 180.02562 * 22 21 20 24 24 O 1.20822 * 120.00229 * 0.02562 * 23 22 21 25 25 O 1.34232 * 119.99833 * 179.97438 * 23 22 21 26 26 C 1.40728 * 107.79917 * 359.97438 * 11 10 9 27 27 N 1.30879 * 108.37511 * 359.76049 * 26 11 10 28 28 H 0.97004 * 119.99619 * 0.02562 * 1 2 3 29 29 H 1.08006 * 126.25118 * 359.92667 * 10 9 7 30 30 H 0.97005 * 119.99974 * 359.97438 * 12 11 10 31 31 H 0.97005 * 119.99860 * 359.97438 * 17 15 13 32 32 H 1.08996 * 109.47396 * 300.00468 * 18 17 15 33 33 H 1.09009 * 109.46944 * 60.00485 * 18 17 15 34 34 H 1.09004 * 109.46929 * 300.00237 * 19 18 17 35 35 H 1.09001 * 109.46910 * 59.99956 * 19 18 17 36 36 H 1.09001 * 109.46557 * 299.99905 * 20 19 18 37 37 H 1.08998 * 109.46887 * 59.99918 * 20 19 18 38 38 H 1.09001 * 109.47464 * 299.99355 * 21 20 19 39 39 H 1.08998 * 109.47433 * 60.00259 * 21 20 19 40 40 H 1.09004 * 109.47244 * 299.99756 * 22 21 20 41 41 H 1.09001 * 109.47575 * 60.00075 * 22 21 20 42 42 H 0.96695 * 117.00055 * 179.97438 * 25 23 22 43 43 H 1.07994 * 125.80747 * 179.97438 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 2.4944 2.0464 -1.4001 5 1 1.4443 2.6526 0.7000 6 1 3.5444 1.4402 0.7001 7 6 2.0079 -1.2038 -0.0005 8 1 3.0879 -1.2039 -0.0001 9 7 1.3214 -2.3929 0.0047 10 6 1.8751 -3.6398 0.0102 11 6 0.8572 -4.5385 0.0147 12 7 0.9879 -5.9353 0.0205 13 6 -0.1115 -6.7150 0.0241 14 8 -1.2149 -6.2085 0.0227 15 6 0.0275 -8.2016 0.0297 16 8 1.1305 -8.7079 0.0307 17 7 -1.0718 -8.9812 0.0338 18 6 -0.9354 -10.4398 0.0388 19 6 -2.3241 -11.0819 0.0420 20 6 -2.1817 -12.6053 0.0479 21 6 -3.5705 -13.2473 0.0518 22 6 -3.4280 -14.7707 0.0570 23 6 -4.7959 -15.4031 0.0602 24 8 -5.7834 -14.7069 0.0580 25 8 -4.9172 -16.7399 0.0644 26 6 -0.3521 -3.8188 0.0124 27 7 -0.0714 -2.5405 0.0120 28 1 -0.4850 0.8401 -0.0004 29 1 2.9303 -3.8700 0.0101 30 1 1.8695 -6.3400 0.0213 31 1 -1.9534 -8.5765 0.0334 32 1 -0.3910 -10.7569 -0.8507 33 1 -0.3890 -10.7506 0.9293 34 1 -2.8689 -10.7649 0.9313 35 1 -2.8702 -10.7711 -0.8487 36 1 -1.6368 -12.9226 -0.8412 37 1 -1.6358 -12.9157 0.9387 38 1 -4.1150 -12.9300 0.9411 39 1 -4.1168 -12.9369 -0.8389 40 1 -2.8836 -15.0877 -0.8326 41 1 -2.8815 -15.0815 0.9474 42 1 -5.8149 -17.0993 0.0667 43 1 -1.3429 -4.2483 0.0145 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601078834.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:15 Heat of formation + Delta-G solvation = -123.697556 kcal Electronic energy + Delta-G solvation = -26865.406361 eV Core-core repulsion = 22525.018215 eV Total energy + Delta-G solvation = -4340.388147 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.01273 -41.21193 -41.13965 -39.45202 -37.61204 -37.06274 -36.20264 -35.42480 -34.88932 -32.32825 -32.24193 -29.92265 -28.41120 -27.06849 -25.51703 -23.79074 -22.88065 -22.36701 -21.70990 -21.43432 -21.16585 -19.61542 -19.11516 -19.00037 -17.69144 -17.44697 -17.40529 -17.33084 -17.07974 -16.73280 -16.34981 -16.34614 -15.68119 -15.55192 -15.03132 -15.01195 -14.83498 -14.43111 -14.42688 -13.87493 -13.51074 -13.38162 -13.22965 -13.00928 -12.93406 -12.90022 -12.52940 -12.52671 -12.19563 -12.08212 -12.05552 -11.96606 -11.96404 -11.57955 -11.40473 -11.06554 -10.87357 -10.57148 -10.27299 -10.14070 -8.62265 -8.48609 -6.26566 0.29756 1.25474 1.29960 1.32801 1.43179 1.59313 1.73079 2.04964 2.12422 2.22373 2.53924 2.60739 2.95646 3.08040 3.54732 3.77228 3.90343 4.00373 4.23211 4.31566 4.39888 4.46948 4.52621 4.65383 4.67448 4.78686 4.86910 4.95917 4.98209 4.99116 5.01420 5.14409 5.21891 5.27415 5.31102 5.40806 5.49445 5.67641 5.90626 6.02037 6.25408 6.49470 6.67808 6.81820 7.01800 7.08192 7.41407 7.62846 8.50583 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.044174 B = 0.001357 C = 0.001319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.705924 B =20629.127225 C =21226.472821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C -0.004 4.004 3 Si 1.020 2.980 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.245 1.245 7 C -0.354 4.354 8 H 0.142 0.858 9 N -0.162 5.162 10 C -0.075 4.075 11 C -0.059 4.059 12 N -0.582 5.582 13 C 0.484 3.516 14 O -0.545 6.545 15 C 0.524 3.476 16 O -0.541 6.541 17 N -0.690 5.690 18 C 0.115 3.885 19 C -0.129 4.129 20 C -0.108 4.108 21 C -0.108 4.108 22 C -0.112 4.112 23 C 0.477 3.523 24 O -0.561 6.561 25 O -0.518 6.518 26 C -0.048 4.048 27 N -0.309 5.309 28 H 0.278 0.722 29 H 0.189 0.811 30 H 0.424 0.576 31 H 0.419 0.581 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.425 0.575 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.131 -28.964 0.142 29.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.216 4.216 3 Si 0.838 3.162 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.168 1.168 7 C -0.485 4.485 8 H 0.160 0.840 9 N 0.070 4.930 10 C -0.226 4.226 11 C -0.165 4.165 12 N -0.227 5.227 13 C 0.266 3.734 14 O -0.423 6.423 15 C 0.304 3.696 16 O -0.419 6.419 17 N -0.343 5.343 18 C -0.007 4.007 19 C -0.167 4.167 20 C -0.146 4.146 21 C -0.146 4.146 22 C -0.149 4.149 23 C 0.322 3.678 24 O -0.452 6.452 25 O -0.331 6.331 26 C -0.223 4.223 27 N -0.141 5.141 28 H 0.088 0.912 29 H 0.206 0.794 30 H 0.261 0.739 31 H 0.256 0.744 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.146 0.854 41 H 0.146 0.854 42 H 0.286 0.714 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -2.670 -27.364 0.145 27.494 hybrid contribution -0.486 -0.236 -0.011 0.540 sum -3.156 -27.600 0.134 27.780 Atomic orbital electron populations 1.70380 1.08408 1.29261 1.36810 1.26878 0.96477 1.04288 0.93987 0.84585 0.78304 0.74017 0.79265 1.18868 1.20130 1.16775 1.20675 0.93077 0.80817 1.53960 0.84050 1.44838 1.03703 1.04746 1.39749 1.22014 0.98859 0.84177 1.17524 1.17320 0.93480 0.82644 1.23058 1.42090 1.09869 1.02906 1.67852 1.20358 0.84578 0.88520 0.79920 1.90646 1.26386 1.75260 1.50041 1.19612 0.85438 0.86657 0.77940 1.90735 1.26115 1.75331 1.49740 1.45810 1.08956 1.07954 1.71535 1.21707 0.99304 0.76428 1.03236 1.21785 0.94725 0.96444 1.03705 1.21437 0.96316 0.92662 1.04218 1.21387 0.97785 0.92486 1.02961 1.21515 0.90061 0.95267 1.08034 1.24161 0.93321 0.80218 0.70104 1.90739 1.42318 1.64358 1.47824 1.84518 1.40314 1.23311 1.84992 1.24243 0.98925 0.90762 1.08379 1.78158 0.91893 1.16494 1.27533 0.91245 0.79434 0.73878 0.74414 0.90554 0.90547 0.90741 0.90736 0.89942 0.89945 0.92063 0.92074 0.85423 0.85416 0.71415 0.80770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.72 11.81 21.66 0.26 -46.46 16 2 C 0.00 -0.21 5.50 84.96 0.47 0.25 16 3 Si 1.02 38.02 29.55 68.60 2.03 40.05 16 4 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 5 H -0.28 -10.20 7.11 99.48 0.71 -9.50 16 6 H -0.24 -8.29 7.11 99.48 0.71 -7.58 16 7 C -0.35 -18.56 10.25 84.02 0.86 -17.70 16 8 H 0.14 6.41 7.83 -2.91 -0.02 6.39 16 9 N -0.16 -8.94 3.73 -189.97 -0.71 -9.65 16 10 C -0.07 -3.47 11.50 83.41 0.96 -2.51 16 11 C -0.06 -2.71 6.90 37.83 0.26 -2.45 16 12 N -0.58 -21.42 5.45 -305.33 -1.66 -23.08 16 13 C 0.48 17.09 7.85 87.23 0.69 17.77 16 14 O -0.55 -21.99 13.62 -3.41 -0.05 -22.04 16 15 C 0.52 14.78 7.88 87.23 0.69 15.47 16 16 O -0.54 -16.55 16.47 -3.29 -0.05 -16.61 16 17 N -0.69 -14.39 5.55 -464.56 -2.58 -16.97 16 18 C 0.12 1.64 5.67 86.38 0.49 2.13 16 19 C -0.13 -1.22 5.33 30.59 0.16 -1.06 16 20 C -0.11 -0.63 5.21 30.60 0.16 -0.47 16 21 C -0.11 -0.88 4.51 30.60 0.14 -0.75 16 22 C -0.11 -0.58 5.81 29.85 0.17 -0.41 16 23 C 0.48 5.41 8.33 71.24 0.59 6.01 16 24 O -0.56 -11.15 16.74 21.98 0.37 -10.78 16 25 O -0.52 -3.76 13.42 -51.44 -0.69 -4.45 16 26 C -0.05 -2.55 10.85 85.44 0.93 -1.62 16 27 N -0.31 -18.39 10.39 -56.43 -0.59 -18.97 16 28 H 0.28 14.50 8.31 -92.71 -0.77 13.73 16 29 H 0.19 6.94 8.06 -2.91 -0.02 6.91 16 30 H 0.42 13.03 8.29 -92.70 -0.77 12.26 16 31 H 0.42 8.18 7.94 -92.70 -0.74 7.44 16 32 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.08 8.14 -2.38 -0.02 1.07 16 34 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.06 0.67 8.10 -2.39 -0.02 0.65 16 39 H 0.06 0.67 8.10 -2.39 -0.02 0.65 16 40 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 41 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 42 H 0.42 0.15 9.10 -74.06 -0.67 -0.52 16 43 H 0.18 9.13 5.92 -2.91 -0.02 9.12 16 Total: -1.00 -80.83 380.43 1.80 -79.03 By element: Atomic # 1 Polarization: 36.35 SS G_CDS: -1.09 Total: 35.26 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 6.56 Total: 14.67 kcal Atomic # 7 Polarization: -109.85 SS G_CDS: -5.28 Total: -115.14 kcal Atomic # 8 Polarization: -53.45 SS G_CDS: -0.42 Total: -53.88 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.05 kcal Total: -80.83 1.80 -79.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601078834.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.667 kcal (2) G-P(sol) polarization free energy of solvation -80.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds