Wall clock time and date at job start Tue Mar 31 2020 21:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38286 * 119.91953 * 2 1 4 4 C 1.38139 * 120.11059 * 179.77080 * 3 2 1 5 5 C 1.38818 * 119.95559 * 0.50156 * 4 3 2 6 6 N 1.40036 * 120.08131 * 179.77573 * 5 4 3 7 7 C 1.34783 * 119.99742 * 341.52737 * 6 5 4 8 8 O 1.21289 * 120.00362 * 354.81979 * 7 6 5 9 9 C 1.50700 * 119.99885 * 174.82066 * 7 6 5 10 10 H 1.08998 * 109.47014 * 300.00022 * 9 7 6 11 11 C 1.52999 * 109.47290 * 60.00009 * 9 7 6 12 12 N 1.46495 * 109.47146 * 180.02562 * 9 7 6 13 13 C 1.36945 * 120.00019 * 299.99919 * 12 9 7 14 14 H 1.08001 * 119.99699 * 320.55766 * 13 12 9 15 15 C 1.38812 * 120.00258 * 140.55612 * 13 12 9 16 16 N 1.31626 * 119.99703 * 344.26916 * 15 13 12 17 17 Si 1.86790 * 120.00022 * 164.26696 * 15 13 12 18 18 H 1.48500 * 109.47176 * 90.00148 * 17 15 13 19 19 H 1.48505 * 109.47376 * 210.00185 * 17 15 13 20 20 H 1.48497 * 109.47275 * 329.99971 * 17 15 13 21 21 C 1.46499 * 120.00080 * 119.99889 * 12 9 7 22 22 C 1.53007 * 109.47107 * 82.46692 * 21 12 9 23 23 C 1.50701 * 109.46805 * 180.02562 * 22 21 12 24 24 O 1.20821 * 120.00315 * 359.97438 * 23 22 21 25 25 O 1.34233 * 119.99576 * 180.02562 * 23 22 21 26 26 C 1.39047 * 119.83728 * 359.50023 * 5 4 3 27 27 F 1.35104 * 120.05282 * 180.27571 * 26 5 4 28 28 C 1.38265 * 119.92421 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.47116 * 269.97688 * 1 2 3 30 30 H 1.09005 * 109.47474 * 29.98207 * 1 2 3 31 31 H 1.08996 * 109.47056 * 149.97541 * 1 2 3 32 32 H 1.08002 * 119.94271 * 0.04317 * 3 2 1 33 33 H 1.07997 * 120.02619 * 180.26198 * 4 3 2 34 34 H 0.97000 * 120.00336 * 161.80517 * 6 5 4 35 35 H 1.08998 * 109.47081 * 60.00054 * 11 9 7 36 36 H 1.08996 * 109.47464 * 179.97438 * 11 9 7 37 37 H 1.08997 * 109.47225 * 300.00105 * 11 9 7 38 38 H 0.96991 * 119.99473 * 179.97438 * 16 15 13 39 39 H 1.09002 * 109.47230 * 202.46158 * 21 12 9 40 40 H 1.08994 * 109.47442 * 322.46475 * 21 12 9 41 41 H 1.08993 * 109.46571 * 299.99880 * 22 21 12 42 42 H 1.08997 * 109.46831 * 60.00005 * 22 21 12 43 43 H 0.96698 * 116.99739 * 179.97438 * 25 23 22 44 44 H 1.08000 * 119.97554 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1986 0.0000 4 6 3.5781 1.2032 0.0048 5 6 4.2753 0.0028 -0.0009 6 7 5.6757 0.0044 -0.0009 7 6 6.3482 1.1141 -0.3654 8 8 5.7444 2.0796 -0.7829 9 6 7.8506 1.1552 -0.2542 10 1 8.1424 0.9996 0.7844 11 6 8.4568 0.0528 -1.1249 12 7 8.3383 2.4600 -0.7077 13 6 8.0898 2.8765 -1.9884 14 1 8.1454 2.1725 -2.8055 15 6 7.7664 4.2035 -2.2363 16 7 7.3957 4.9867 -1.2455 17 14 7.8574 4.8776 -3.9760 18 1 6.5464 4.6915 -4.6482 19 1 8.1888 6.3244 -3.9296 20 1 8.9092 4.1529 -4.7333 21 6 9.0918 3.3193 0.2088 22 6 10.5576 2.8812 0.2297 23 6 11.3326 3.7648 1.1730 24 8 10.7703 4.6540 1.7671 25 8 12.6477 3.5645 1.3523 26 6 3.5798 -1.2012 -0.0009 27 9 4.2539 -2.3720 -0.0009 28 6 2.1967 -1.1983 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3634 0.8902 -0.5136 31 1 -0.3633 -0.8897 -0.5142 32 1 1.6545 2.1326 0.0007 33 1 4.1154 2.1400 0.0090 34 1 6.1616 -0.7943 0.2576 35 1 8.1650 0.2084 -2.1635 36 1 9.5434 0.0828 -1.0449 37 1 8.0939 -0.9178 -0.7871 38 1 7.1702 5.9140 -1.4187 39 1 9.0268 4.3542 -0.1273 40 1 8.6733 3.2361 1.2117 41 1 10.6226 1.8464 0.5657 42 1 10.9761 2.9646 -0.7733 43 1 13.1021 4.1568 1.9669 44 1 1.6551 -2.1327 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607797783.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:17 Heat of formation + Delta-G solvation = -139.906642 kcal Electronic energy + Delta-G solvation = -29718.333506 eV Core-core repulsion = 25357.322519 eV Total energy + Delta-G solvation = -4361.010987 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.89967 -41.45562 -41.08915 -39.61059 -37.69651 -36.93115 -35.88331 -34.00115 -33.17390 -32.17394 -31.49573 -30.07739 -27.49016 -26.80315 -25.24148 -24.20557 -23.62231 -22.35943 -21.58864 -21.00331 -19.41659 -19.02626 -18.26322 -17.88353 -17.63188 -17.22315 -17.13072 -16.85768 -16.67137 -16.55423 -15.92464 -15.74416 -15.33130 -15.00020 -14.77759 -14.59272 -14.41479 -14.31574 -14.21171 -13.97337 -13.48500 -13.13165 -13.00979 -12.98556 -12.89347 -12.76353 -12.64633 -12.62056 -12.46695 -12.44225 -12.28586 -12.03486 -11.85462 -11.52764 -11.46767 -11.29419 -10.47258 -10.27525 -9.79766 -8.85131 -8.53386 -7.77551 -5.40472 0.13291 0.26363 1.34318 1.43911 1.46559 1.53537 1.88881 2.05391 2.29734 2.55175 2.68761 3.18403 3.40389 3.61520 3.73338 3.88798 4.05841 4.24104 4.24856 4.32058 4.33666 4.41887 4.53856 4.64112 4.72362 4.73605 4.86920 4.90476 4.98171 4.99825 5.10567 5.14162 5.18174 5.26651 5.34016 5.47892 5.55237 5.61168 5.68151 5.75849 5.85618 6.04052 6.45390 6.60022 7.11555 7.21296 7.44845 7.84102 8.35231 9.22884 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011999 B = 0.003418 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.030305 B = 8189.496745 C = 9290.999682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.087 4.087 3 C -0.111 4.111 4 C -0.143 4.143 5 C 0.112 3.888 6 N -0.670 5.670 7 C 0.480 3.520 8 O -0.508 6.508 9 C 0.145 3.855 10 H 0.103 0.897 11 C -0.141 4.141 12 N -0.565 5.565 13 C -0.244 4.244 14 H 0.059 0.941 15 C -0.023 4.023 16 N -0.907 5.907 17 Si 0.944 3.056 18 H -0.298 1.298 19 H -0.295 1.295 20 H -0.261 1.261 21 C 0.170 3.830 22 C -0.120 4.120 23 C 0.487 3.513 24 O -0.557 6.557 25 O -0.512 6.512 26 C 0.048 3.952 27 F -0.140 7.140 28 C -0.127 4.127 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.138 0.862 33 H 0.130 0.870 34 H 0.419 0.581 35 H 0.038 0.962 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.243 0.757 39 H 0.066 0.934 40 H 0.017 0.983 41 H 0.121 0.879 42 H 0.105 0.895 43 H 0.422 0.578 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.236 -14.707 5.386 15.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.088 4.088 3 C -0.130 4.130 4 C -0.163 4.163 5 C 0.015 3.985 6 N -0.317 5.317 7 C 0.267 3.733 8 O -0.379 6.379 9 C 0.034 3.966 10 H 0.121 0.879 11 C -0.200 4.200 12 N -0.284 5.284 13 C -0.375 4.375 14 H 0.077 0.923 15 C -0.221 4.221 16 N -0.549 5.549 17 Si 0.773 3.227 18 H -0.225 1.225 19 H -0.222 1.222 20 H -0.185 1.185 21 C 0.043 3.957 22 C -0.160 4.160 23 C 0.331 3.669 24 O -0.448 6.448 25 O -0.325 6.325 26 C 0.026 3.974 27 F -0.118 7.118 28 C -0.146 4.146 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.156 0.844 33 H 0.148 0.852 34 H 0.257 0.743 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.052 0.948 39 H 0.084 0.916 40 H 0.036 0.964 41 H 0.139 0.861 42 H 0.124 0.876 43 H 0.283 0.717 44 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -3.903 -13.831 4.968 15.205 hybrid contribution 0.538 0.964 -0.340 1.155 sum -3.365 -12.867 4.628 14.082 Atomic orbital electron populations 1.20811 0.87862 1.04014 1.03597 1.20046 0.98135 0.91225 0.99442 1.21262 0.92764 0.99310 0.99640 1.21627 0.95445 0.97821 1.01417 1.18143 0.84478 0.93388 1.02536 1.43940 1.03550 1.16982 1.67225 1.23103 0.93011 0.81384 0.75839 1.90680 1.69419 1.36084 1.41745 1.20908 0.86304 0.89589 0.99765 0.87929 1.22043 1.02256 0.96303 0.99403 1.43796 1.58179 1.16217 1.10202 1.18883 1.41217 0.93159 0.84214 0.92348 1.25838 0.97825 0.99429 0.99045 1.70122 1.46981 1.05872 1.31974 0.85669 0.77589 0.77321 0.82129 1.22543 1.22182 1.18525 1.20471 0.86975 0.97139 0.91113 1.22044 0.96029 0.99637 0.98291 1.23908 0.80551 0.82467 0.79953 1.90712 1.71175 1.34233 1.48698 1.84532 1.22781 1.60819 1.64364 1.17411 0.90904 0.79117 1.09941 1.91443 1.80537 1.45256 1.94603 1.21113 0.90564 1.00526 1.02419 0.89641 0.90848 0.89787 0.84375 0.85203 0.74312 0.94252 0.90057 0.90203 0.94756 0.91573 0.96421 0.86111 0.87643 0.71677 0.81726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 10.01 71.24 0.71 -0.83 16 2 C -0.09 -1.99 5.88 -19.85 -0.12 -2.10 16 3 C -0.11 -3.21 9.69 22.26 0.22 -2.99 16 4 C -0.14 -5.22 8.81 22.39 0.20 -5.02 16 5 C 0.11 3.75 6.53 38.16 0.25 4.00 16 6 N -0.67 -21.90 5.28 -303.31 -1.60 -23.50 16 7 C 0.48 19.63 6.90 87.66 0.60 20.24 16 8 O -0.51 -26.43 12.09 -3.06 -0.04 -26.46 16 9 C 0.15 5.30 3.17 44.25 0.14 5.44 16 10 H 0.10 3.19 7.89 -2.39 -0.02 3.17 16 11 C -0.14 -4.04 9.05 71.98 0.65 -3.39 16 12 N -0.57 -25.80 2.17 -682.20 -1.48 -27.28 16 13 C -0.24 -12.77 7.46 84.03 0.63 -12.15 16 14 H 0.06 3.05 6.85 -2.91 -0.02 3.03 16 15 C -0.02 -1.30 5.01 84.86 0.43 -0.87 16 16 N -0.91 -54.87 11.37 21.65 0.25 -54.63 16 17 Si 0.94 45.78 29.58 68.60 2.03 47.81 16 18 H -0.30 -14.88 7.11 99.48 0.71 -14.18 16 19 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 20 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 21 C 0.17 7.66 4.40 86.38 0.38 8.04 16 22 C -0.12 -4.04 6.12 29.85 0.18 -3.86 16 23 C 0.49 16.10 8.33 71.24 0.59 16.70 16 24 O -0.56 -23.17 16.74 21.98 0.37 -22.80 16 25 O -0.51 -12.24 13.42 -51.44 -0.69 -12.93 16 26 C 0.05 1.35 7.31 22.48 0.16 1.51 16 27 F -0.14 -3.62 16.74 44.97 0.75 -2.87 16 28 C -0.13 -2.89 9.67 22.29 0.22 -2.68 16 29 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.02 8.08 -2.38 -0.02 1.00 16 31 H 0.08 0.94 8.08 -2.39 -0.02 0.92 16 32 H 0.14 3.54 8.06 -2.91 -0.02 3.51 16 33 H 0.13 5.90 5.33 -3.00 -0.02 5.89 16 34 H 0.42 10.62 7.61 -92.71 -0.71 9.92 16 35 H 0.04 1.32 7.01 -2.39 -0.02 1.31 16 36 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.08 1.70 7.45 -2.39 -0.02 1.68 16 38 H 0.24 14.60 8.31 -92.72 -0.77 13.82 16 39 H 0.07 3.65 5.52 -2.39 -0.01 3.63 16 40 H 0.02 0.82 8.04 -2.39 -0.02 0.80 16 41 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 42 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 43 H 0.42 6.24 9.10 -74.06 -0.67 5.57 16 44 H 0.17 2.63 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -77.48 374.99 4.52 -72.96 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: -0.31 Total: 27.66 kcal Atomic # 6 Polarization: 16.80 SS G_CDS: 5.24 Total: 22.04 kcal Atomic # 7 Polarization: -102.57 SS G_CDS: -2.83 Total: -105.41 kcal Atomic # 8 Polarization: -61.84 SS G_CDS: -0.36 Total: -62.19 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.75 Total: -2.87 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -77.48 4.52 -72.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607797783.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.947 kcal (2) G-P(sol) polarization free energy of solvation -77.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds