Wall clock time and date at job start Tue Mar 31 2020 21:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38283 * 119.92490 * 2 1 4 4 C 1.38147 * 120.11480 * 179.74346 * 3 2 1 5 5 C 1.38815 * 119.95032 * 0.55449 * 4 3 2 6 6 N 1.40038 * 120.07578 * 179.72102 * 5 4 3 7 7 C 1.34783 * 120.00275 * 20.33438 * 6 5 4 8 8 O 1.21295 * 119.99567 * 5.38598 * 7 6 5 9 9 C 1.50697 * 120.00019 * 185.38878 * 7 6 5 10 10 H 1.08995 * 109.47292 * 60.00247 * 9 7 6 11 11 C 1.52997 * 109.46981 * 299.99858 * 9 7 6 12 12 N 1.46502 * 109.46760 * 180.02562 * 9 7 6 13 13 C 1.36935 * 120.00262 * 64.50182 * 12 9 7 14 14 H 1.07992 * 119.99885 * 34.81240 * 13 12 9 15 15 C 1.38813 * 119.99637 * 215.09549 * 13 12 9 16 16 N 1.31615 * 120.00366 * 22.30083 * 15 13 12 17 17 Si 1.86804 * 119.99682 * 202.30597 * 15 13 12 18 18 H 1.48508 * 109.47160 * 89.99861 * 17 15 13 19 19 H 1.48500 * 109.47011 * 209.99852 * 17 15 13 20 20 H 1.48502 * 109.46982 * 329.99890 * 17 15 13 21 21 C 1.46503 * 119.99563 * 244.49861 * 12 9 7 22 22 C 1.53005 * 109.47044 * 269.99852 * 21 12 9 23 23 C 1.50700 * 109.47036 * 180.02562 * 22 21 12 24 24 O 1.20833 * 119.99949 * 0.02562 * 23 22 21 25 25 O 1.34228 * 120.00170 * 180.02562 * 23 22 21 26 26 C 1.39044 * 119.84141 * 359.44812 * 5 4 3 27 27 F 1.35102 * 120.05353 * 180.29218 * 26 5 4 28 28 C 1.38271 * 119.92407 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.46922 * 269.97724 * 1 2 3 30 30 H 1.09003 * 109.46833 * 29.97862 * 1 2 3 31 31 H 1.08999 * 109.46715 * 149.97410 * 1 2 3 32 32 H 1.08004 * 119.94125 * 0.04750 * 3 2 1 33 33 H 1.07998 * 120.02202 * 180.27947 * 4 3 2 34 34 H 0.97004 * 120.00161 * 200.33431 * 6 5 4 35 35 H 1.09002 * 109.46945 * 178.12885 * 11 9 7 36 36 H 1.09001 * 109.47211 * 298.12133 * 11 9 7 37 37 H 1.09000 * 109.47065 * 58.12984 * 11 9 7 38 38 H 0.97002 * 120.00313 * 180.02562 * 16 15 13 39 39 H 1.08997 * 109.47825 * 30.00201 * 21 12 9 40 40 H 1.09004 * 109.46976 * 150.00562 * 21 12 9 41 41 H 1.08997 * 109.47202 * 300.00017 * 22 21 12 42 42 H 1.08995 * 109.46920 * 60.00411 * 22 21 12 43 43 H 0.96703 * 117.00046 * 180.02562 * 25 23 22 44 44 H 1.07999 * 119.97369 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5783 1.2031 0.0054 5 6 4.2753 0.0026 -0.0009 6 7 5.6757 0.0042 -0.0014 7 6 6.3486 1.0975 0.4094 8 8 5.7452 2.0430 0.8711 9 6 7.8505 1.1450 0.2952 10 1 8.1390 1.0357 -0.7502 11 6 8.4605 0.0059 1.1144 12 7 8.3385 2.4287 0.8053 13 6 8.1751 2.7470 2.1271 14 1 8.2338 1.9747 2.8797 15 6 7.9280 4.0613 2.4990 16 7 7.4226 4.9081 1.6273 17 14 8.3131 4.6284 4.2367 18 1 9.7077 5.1356 4.2943 19 1 7.3754 5.7134 4.6225 20 1 8.1623 3.4870 5.1747 21 6 9.0016 3.3717 -0.0987 22 6 10.5064 3.0951 -0.1100 23 6 11.1886 4.0656 -1.0395 24 8 10.5380 4.8939 -1.6317 25 8 12.5189 4.0099 -1.2095 26 6 3.5798 -1.2013 -0.0009 27 9 4.2539 -2.3722 -0.0010 28 6 2.1968 -1.1984 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6546 2.1326 0.0008 33 1 4.1155 2.1399 0.0099 34 1 6.1616 -0.7814 -0.2974 35 1 9.5449 0.0201 1.0051 36 1 8.1997 0.1338 2.1650 37 1 8.0717 -0.9475 0.7569 38 1 7.2503 5.8266 1.8870 39 1 8.6025 3.2515 -1.1058 40 1 8.8222 4.3908 0.2440 41 1 10.9056 3.2154 0.8971 42 1 10.6859 2.0761 -0.4527 43 1 12.9114 4.6533 -1.8154 44 1 1.6551 -2.1327 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607797784.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:23 Heat of formation + Delta-G solvation = -118.244735 kcal Electronic energy + Delta-G solvation = -29699.806528 eV Core-core repulsion = 25339.734872 eV Total energy + Delta-G solvation = -4360.071656 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -48.75443 -40.04465 -39.71984 -38.32610 -36.16514 -35.56966 -34.44435 -32.39843 -31.49164 -30.98970 -30.36420 -28.46632 -26.41647 -25.07517 -23.81219 -22.97005 -22.18195 -21.10252 -20.13291 -19.47153 -17.97518 -17.70044 -16.81039 -16.68975 -16.18637 -15.78045 -15.65942 -15.59543 -15.30828 -15.02070 -14.39688 -14.28843 -13.85596 -13.64783 -13.58858 -13.40092 -13.22464 -13.00346 -12.87216 -12.46004 -12.12350 -11.98877 -11.78277 -11.66802 -11.53605 -11.50624 -11.18276 -11.10623 -11.05242 -10.83544 -10.73497 -10.21540 -10.06462 -10.01796 -9.97714 -9.75438 -8.84202 -8.59609 -8.48775 -7.62696 -6.74536 -5.79473 -3.36977 1.30061 1.41946 2.71170 3.33069 3.34036 3.38776 3.45294 3.45862 3.59316 3.89406 4.33722 4.45627 4.79242 4.96070 5.17763 5.23239 5.30466 5.34424 5.43828 5.55169 5.61286 5.69278 5.73358 5.80678 5.87248 5.88404 5.95839 6.07326 6.13613 6.22513 6.32488 6.39365 6.43208 6.48944 6.68793 6.75710 6.77572 6.81479 6.93089 7.26301 7.65602 7.78598 7.88020 8.32593 8.43413 8.91240 9.09450 9.71752 10.24233 11.21966 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012328 B = 0.003337 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.767782 B = 8388.171545 C = 9279.347093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.099 4.099 3 C -0.104 4.104 4 C -0.113 4.113 5 C 0.138 3.862 6 N -0.685 5.685 7 C 0.480 3.520 8 O -0.454 6.454 9 C 0.151 3.849 10 H 0.078 0.922 11 C -0.152 4.152 12 N -0.550 5.550 13 C -0.264 4.264 14 H 0.066 0.934 15 C 0.026 3.974 16 N -0.864 5.864 17 Si 0.895 3.105 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.278 1.278 21 C 0.156 3.844 22 C -0.130 4.130 23 C 0.477 3.523 24 O -0.516 6.516 25 O -0.528 6.528 26 C 0.048 3.952 27 F -0.144 7.144 28 C -0.134 4.134 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.128 0.872 33 H 0.167 0.833 34 H 0.404 0.596 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.043 0.957 38 H 0.254 0.746 39 H 0.033 0.967 40 H 0.113 0.887 41 H 0.104 0.896 42 H 0.086 0.914 43 H 0.398 0.602 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.284 -10.693 -6.014 12.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.100 4.100 3 C -0.123 4.123 4 C -0.134 4.134 5 C 0.040 3.960 6 N -0.331 5.331 7 C 0.265 3.735 8 O -0.322 6.322 9 C 0.039 3.961 10 H 0.096 0.904 11 C -0.211 4.211 12 N -0.267 5.267 13 C -0.393 4.393 14 H 0.084 0.916 15 C -0.177 4.177 16 N -0.504 5.504 17 Si 0.724 3.276 18 H -0.213 1.213 19 H -0.217 1.217 20 H -0.203 1.203 21 C 0.030 3.970 22 C -0.170 4.170 23 C 0.319 3.681 24 O -0.404 6.404 25 O -0.340 6.340 26 C 0.026 3.974 27 F -0.123 7.123 28 C -0.153 4.153 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.146 0.854 33 H 0.184 0.816 34 H 0.239 0.761 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.052 0.948 40 H 0.130 0.870 41 H 0.122 0.878 42 H 0.104 0.896 43 H 0.256 0.744 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.004 -9.802 -5.523 11.942 hybrid contribution 0.715 0.041 0.368 0.805 sum -3.289 -9.761 -5.155 11.518 Atomic orbital electron populations 1.20714 0.90913 1.02567 1.02226 1.19634 0.96088 0.92302 1.01971 1.21064 0.93816 0.97591 0.99835 1.21761 0.94021 0.98647 0.98937 1.18045 0.84651 0.92677 1.00657 1.44369 1.03216 1.19233 1.66306 1.23112 0.92442 0.81192 0.76732 1.90693 1.68516 1.34593 1.38364 1.20667 0.87039 0.90828 0.97581 0.90411 1.22116 1.01196 0.95783 1.02030 1.43813 1.61172 1.14776 1.06982 1.18855 1.45594 0.93037 0.81840 0.91624 1.25141 0.97189 0.98399 0.96992 1.70010 1.40893 1.04911 1.34548 0.86440 0.77763 0.78391 0.85004 1.21303 1.21745 1.20295 1.20876 0.84802 0.99057 0.92304 1.22305 1.00311 0.96322 0.98060 1.24176 0.79355 0.83992 0.80552 1.90701 1.65670 1.37270 1.46738 1.84623 1.25162 1.59606 1.64590 1.17357 0.90170 0.79811 1.10095 1.91433 1.80447 1.45796 1.94632 1.20690 0.91370 0.99013 1.04275 0.91308 0.91467 0.91795 0.85430 0.81581 0.76092 0.91852 0.91601 0.93808 0.93544 0.94810 0.87001 0.87778 0.89553 0.74442 0.85129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 36.01 0.36 -0.61 16 2 C -0.10 -1.24 5.88 -104.59 -0.62 -1.85 16 3 C -0.10 -1.49 9.69 -39.60 -0.38 -1.88 16 4 C -0.11 -1.97 8.78 -39.40 -0.35 -2.31 16 5 C 0.14 2.30 6.50 -83.60 -0.54 1.75 16 6 N -0.68 -11.22 5.26 -9.81 -0.05 -11.27 16 7 C 0.48 9.58 6.90 -10.98 -0.08 9.50 16 8 O -0.45 -11.17 12.41 5.54 0.07 -11.10 16 9 C 0.15 2.80 3.17 -69.08 -0.22 2.58 16 10 H 0.08 1.26 7.83 -51.93 -0.41 0.86 16 11 C -0.15 -2.36 9.03 37.16 0.34 -2.03 16 12 N -0.55 -12.33 2.14 -166.98 -0.36 -12.69 16 13 C -0.26 -6.69 7.72 -15.06 -0.12 -6.81 16 14 H 0.07 1.68 6.63 -52.49 -0.35 1.33 16 15 C 0.03 0.68 4.96 -17.43 -0.09 0.60 16 16 N -0.86 -24.55 11.35 55.49 0.63 -23.92 16 17 Si 0.89 21.29 29.61 -169.99 -5.03 16.25 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C 0.16 3.44 4.54 -4.04 -0.02 3.42 16 22 C -0.13 -2.30 6.14 -27.88 -0.17 -2.47 16 23 C 0.48 8.26 8.33 36.01 0.30 8.56 16 24 O -0.52 -10.66 16.74 -18.76 -0.31 -10.97 16 25 O -0.53 -7.17 13.42 -39.25 -0.53 -7.70 16 26 C 0.05 0.71 7.31 -39.26 -0.29 0.42 16 27 F -0.14 -2.06 16.77 2.25 0.04 -2.03 16 28 C -0.13 -1.73 9.67 -39.55 -0.38 -2.11 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 31 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 32 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 33 H 0.17 3.40 5.46 -52.49 -0.29 3.11 16 34 H 0.40 5.42 7.62 -40.82 -0.31 5.11 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 1.17 6.75 -51.93 -0.35 0.82 16 37 H 0.04 0.55 7.40 -51.93 -0.38 0.16 16 38 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.03 0.74 7.92 -51.93 -0.41 0.33 16 40 H 0.11 2.94 5.32 -51.93 -0.28 2.66 16 41 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 42 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 43 H 0.40 3.59 9.10 45.56 0.41 4.00 16 44 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 374.83 15.07 5.65 5.65 Total: -1.00 -32.70 374.83 -7.02 -39.72 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -4.87 Total: 11.30 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: -2.25 Total: 6.76 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: 0.22 Total: -47.88 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -0.77 Total: -29.77 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.70 -7.02 -39.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607797784.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.524 kcal (2) G-P(sol) polarization free energy of solvation -32.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds