Wall clock time and date at job start Tue Mar 31 2020 21:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38283 * 119.92490 * 2 1 4 4 C 1.38147 * 120.11480 * 179.74346 * 3 2 1 5 5 C 1.38815 * 119.95032 * 0.55449 * 4 3 2 6 6 N 1.40038 * 120.07578 * 179.72102 * 5 4 3 7 7 C 1.34783 * 120.00275 * 20.33438 * 6 5 4 8 8 O 1.21295 * 119.99567 * 5.38598 * 7 6 5 9 9 C 1.50697 * 120.00019 * 185.38878 * 7 6 5 10 10 H 1.08995 * 109.47292 * 60.00247 * 9 7 6 11 11 C 1.52997 * 109.46981 * 299.99858 * 9 7 6 12 12 N 1.46502 * 109.46760 * 180.02562 * 9 7 6 13 13 C 1.36935 * 120.00262 * 64.50182 * 12 9 7 14 14 H 1.07992 * 119.99885 * 34.81240 * 13 12 9 15 15 C 1.38813 * 119.99637 * 215.09549 * 13 12 9 16 16 N 1.31615 * 120.00366 * 22.30083 * 15 13 12 17 17 Si 1.86804 * 119.99682 * 202.30597 * 15 13 12 18 18 H 1.48508 * 109.47160 * 89.99861 * 17 15 13 19 19 H 1.48500 * 109.47011 * 209.99852 * 17 15 13 20 20 H 1.48502 * 109.46982 * 329.99890 * 17 15 13 21 21 C 1.46503 * 119.99563 * 244.49861 * 12 9 7 22 22 C 1.53005 * 109.47044 * 269.99852 * 21 12 9 23 23 C 1.50700 * 109.47036 * 180.02562 * 22 21 12 24 24 O 1.20833 * 119.99949 * 0.02562 * 23 22 21 25 25 O 1.34228 * 120.00170 * 180.02562 * 23 22 21 26 26 C 1.39044 * 119.84141 * 359.44812 * 5 4 3 27 27 F 1.35102 * 120.05353 * 180.29218 * 26 5 4 28 28 C 1.38271 * 119.92407 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.46922 * 269.97724 * 1 2 3 30 30 H 1.09003 * 109.46833 * 29.97862 * 1 2 3 31 31 H 1.08999 * 109.46715 * 149.97410 * 1 2 3 32 32 H 1.08004 * 119.94125 * 0.04750 * 3 2 1 33 33 H 1.07998 * 120.02202 * 180.27947 * 4 3 2 34 34 H 0.97004 * 120.00161 * 200.33431 * 6 5 4 35 35 H 1.09002 * 109.46945 * 178.12885 * 11 9 7 36 36 H 1.09001 * 109.47211 * 298.12133 * 11 9 7 37 37 H 1.09000 * 109.47065 * 58.12984 * 11 9 7 38 38 H 0.97002 * 120.00313 * 180.02562 * 16 15 13 39 39 H 1.08997 * 109.47825 * 30.00201 * 21 12 9 40 40 H 1.09004 * 109.46976 * 150.00562 * 21 12 9 41 41 H 1.08997 * 109.47202 * 300.00017 * 22 21 12 42 42 H 1.08995 * 109.46920 * 60.00411 * 22 21 12 43 43 H 0.96703 * 117.00046 * 180.02562 * 25 23 22 44 44 H 1.07999 * 119.97369 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5783 1.2031 0.0054 5 6 4.2753 0.0026 -0.0009 6 7 5.6757 0.0042 -0.0014 7 6 6.3486 1.0975 0.4094 8 8 5.7452 2.0430 0.8711 9 6 7.8505 1.1450 0.2952 10 1 8.1390 1.0357 -0.7502 11 6 8.4605 0.0059 1.1144 12 7 8.3385 2.4287 0.8053 13 6 8.1751 2.7470 2.1271 14 1 8.2338 1.9747 2.8797 15 6 7.9280 4.0613 2.4990 16 7 7.4226 4.9081 1.6273 17 14 8.3131 4.6284 4.2367 18 1 9.7077 5.1356 4.2943 19 1 7.3754 5.7134 4.6225 20 1 8.1623 3.4870 5.1747 21 6 9.0016 3.3717 -0.0987 22 6 10.5064 3.0951 -0.1100 23 6 11.1886 4.0656 -1.0395 24 8 10.5380 4.8939 -1.6317 25 8 12.5189 4.0099 -1.2095 26 6 3.5798 -1.2013 -0.0009 27 9 4.2539 -2.3722 -0.0010 28 6 2.1968 -1.1984 -0.0005 29 1 -0.3633 -0.0004 1.0276 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6546 2.1326 0.0008 33 1 4.1155 2.1399 0.0099 34 1 6.1616 -0.7814 -0.2974 35 1 9.5449 0.0201 1.0051 36 1 8.1997 0.1338 2.1650 37 1 8.0717 -0.9475 0.7569 38 1 7.2503 5.8266 1.8870 39 1 8.6025 3.2515 -1.1058 40 1 8.8222 4.3908 0.2440 41 1 10.9056 3.2154 0.8971 42 1 10.6859 2.0761 -0.4527 43 1 12.9114 4.6533 -1.8154 44 1 1.6551 -2.1327 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607797784.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:22 Heat of formation + Delta-G solvation = -139.692099 kcal Electronic energy + Delta-G solvation = -29700.736556 eV Core-core repulsion = 25339.734872 eV Total energy + Delta-G solvation = -4361.001684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.90101 -41.44684 -41.09425 -39.61576 -37.71786 -36.94023 -35.88528 -34.01760 -33.16628 -32.19439 -31.50138 -30.04551 -27.49518 -26.87037 -25.22242 -24.20743 -23.62859 -22.35162 -21.60335 -21.00073 -19.39105 -19.04374 -18.26494 -17.87156 -17.65514 -17.22357 -17.16300 -16.86791 -16.66498 -16.55979 -15.92960 -15.75297 -15.34264 -15.00322 -14.79375 -14.60854 -14.39815 -14.29404 -14.21344 -13.99533 -13.51496 -13.12443 -13.00622 -12.98789 -12.87850 -12.77461 -12.64197 -12.60419 -12.48785 -12.45075 -12.27797 -12.00546 -11.82668 -11.53213 -11.46827 -11.28119 -10.51900 -10.29251 -9.80304 -8.86287 -8.60926 -7.76568 -5.35490 0.12933 0.25830 1.33326 1.45071 1.47634 1.54617 1.88181 2.05448 2.29608 2.55567 2.68132 3.18459 3.36176 3.60130 3.73623 3.89085 4.05555 4.24655 4.25088 4.31838 4.33182 4.41406 4.52771 4.63780 4.72359 4.73281 4.86056 4.90224 4.97267 4.99923 5.10567 5.13432 5.17710 5.24946 5.33762 5.47054 5.55225 5.60649 5.67508 5.76479 5.87268 6.03554 6.42673 6.58581 7.10356 7.18849 7.44089 7.84762 8.33831 9.21544 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012328 B = 0.003337 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.767782 B = 8388.171545 C = 9279.347093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.086 4.086 3 C -0.111 4.111 4 C -0.138 4.138 5 C 0.111 3.889 6 N -0.670 5.670 7 C 0.478 3.522 8 O -0.511 6.511 9 C 0.145 3.855 10 H 0.105 0.895 11 C -0.140 4.140 12 N -0.563 5.563 13 C -0.245 4.245 14 H 0.063 0.937 15 C -0.029 4.029 16 N -0.902 5.902 17 Si 0.944 3.056 18 H -0.279 1.279 19 H -0.306 1.306 20 H -0.271 1.271 21 C 0.160 3.840 22 C -0.118 4.118 23 C 0.487 3.513 24 O -0.557 6.557 25 O -0.512 6.512 26 C 0.049 3.951 27 F -0.140 7.140 28 C -0.128 4.128 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.139 0.861 33 H 0.127 0.873 34 H 0.419 0.581 35 H 0.081 0.919 36 H 0.039 0.961 37 H 0.079 0.921 38 H 0.243 0.757 39 H 0.024 0.976 40 H 0.069 0.931 41 H 0.101 0.899 42 H 0.121 0.879 43 H 0.422 0.578 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.380 -14.026 -6.494 15.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.087 4.087 3 C -0.130 4.130 4 C -0.159 4.159 5 C 0.013 3.987 6 N -0.318 5.318 7 C 0.264 3.736 8 O -0.383 6.383 9 C 0.034 3.966 10 H 0.123 0.877 11 C -0.199 4.199 12 N -0.281 5.281 13 C -0.376 4.376 14 H 0.081 0.919 15 C -0.227 4.227 16 N -0.545 5.545 17 Si 0.774 3.226 18 H -0.206 1.206 19 H -0.233 1.233 20 H -0.196 1.196 21 C 0.033 3.967 22 C -0.158 4.158 23 C 0.331 3.669 24 O -0.448 6.448 25 O -0.325 6.325 26 C 0.027 3.973 27 F -0.119 7.119 28 C -0.147 4.147 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.157 0.843 33 H 0.145 0.855 34 H 0.257 0.743 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.097 0.903 38 H 0.052 0.948 39 H 0.043 0.957 40 H 0.086 0.914 41 H 0.120 0.880 42 H 0.139 0.861 43 H 0.283 0.717 44 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -4.056 -13.215 -6.024 15.079 hybrid contribution 0.673 0.942 0.407 1.228 sum -3.383 -12.273 -5.616 13.915 Atomic orbital electron populations 1.20815 0.87837 1.04230 1.03418 1.20049 0.98146 0.91211 0.99327 1.21262 0.92720 0.99347 0.99655 1.21509 0.95420 0.97590 1.01340 1.18136 0.84525 0.93356 1.02640 1.43958 1.03526 1.18779 1.65526 1.23258 0.93137 0.81142 0.76013 1.90706 1.69615 1.36761 1.41236 1.20954 0.86219 0.89836 0.99631 0.87732 1.22011 1.02242 0.95865 0.99760 1.43903 1.62164 1.15816 1.06240 1.18974 1.42729 0.92521 0.83337 0.91917 1.25734 0.98370 0.99052 0.99553 1.70191 1.43759 1.04521 1.36005 0.85639 0.77355 0.77557 0.82081 1.20579 1.23316 1.19616 1.20589 0.87781 0.97018 0.91294 1.21972 0.97124 0.98321 0.98344 1.23912 0.80276 0.82986 0.79690 1.90706 1.66874 1.38785 1.48425 1.84533 1.22844 1.60179 1.64959 1.17429 0.90915 0.79147 1.09789 1.91444 1.80554 1.45269 1.94585 1.21120 0.90564 1.00552 1.02456 0.90159 0.90516 0.89552 0.84276 0.85541 0.74313 0.90005 0.94166 0.90270 0.94786 0.95712 0.91359 0.88037 0.86091 0.71675 0.81736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 10.01 71.24 0.71 -0.82 16 2 C -0.09 -1.95 5.88 -19.85 -0.12 -2.06 16 3 C -0.11 -3.18 9.69 22.26 0.22 -2.96 16 4 C -0.14 -5.01 8.78 22.39 0.20 -4.82 16 5 C 0.11 3.70 6.50 38.16 0.25 3.95 16 6 N -0.67 -21.90 5.26 -303.32 -1.60 -23.50 16 7 C 0.48 19.55 6.90 87.66 0.60 20.15 16 8 O -0.51 -26.69 12.41 -3.08 -0.04 -26.72 16 9 C 0.14 5.28 3.17 44.24 0.14 5.42 16 10 H 0.10 3.23 7.83 -2.39 -0.02 3.21 16 11 C -0.14 -4.04 9.03 71.98 0.65 -3.39 16 12 N -0.56 -25.65 2.14 -682.21 -1.46 -27.11 16 13 C -0.25 -12.75 7.72 84.03 0.65 -12.10 16 14 H 0.06 3.26 6.63 -2.91 -0.02 3.24 16 15 C -0.03 -1.60 4.96 84.86 0.42 -1.18 16 16 N -0.90 -54.47 11.35 21.65 0.25 -54.22 16 17 Si 0.94 45.32 29.61 68.60 2.03 47.35 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.31 -15.26 7.11 99.48 0.71 -14.55 16 20 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 21 C 0.16 7.22 4.54 86.38 0.39 7.61 16 22 C -0.12 -4.06 6.14 29.85 0.18 -3.88 16 23 C 0.49 16.41 8.33 71.24 0.59 17.00 16 24 O -0.56 -23.27 16.74 21.94 0.37 -22.91 16 25 O -0.51 -12.59 13.42 -51.40 -0.69 -13.28 16 26 C 0.05 1.37 7.31 22.48 0.16 1.54 16 27 F -0.14 -3.65 16.77 44.97 0.75 -2.89 16 28 C -0.13 -2.90 9.67 22.29 0.22 -2.68 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 30 H 0.08 1.00 8.08 -2.39 -0.02 0.98 16 31 H 0.09 0.90 8.08 -2.39 -0.02 0.89 16 32 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 33 H 0.13 5.69 5.46 -2.91 -0.02 5.67 16 34 H 0.42 10.61 7.62 -92.71 -0.71 9.91 16 35 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.04 1.37 6.75 -2.39 -0.02 1.36 16 37 H 0.08 1.71 7.40 -2.39 -0.02 1.69 16 38 H 0.24 14.53 8.31 -92.71 -0.77 13.76 16 39 H 0.02 1.12 7.92 -2.39 -0.02 1.10 16 40 H 0.07 3.79 5.32 -2.39 -0.01 3.77 16 41 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 42 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 43 H 0.42 6.46 9.10 -74.05 -0.67 5.79 16 44 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -77.24 374.83 4.57 -72.67 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: -0.31 Total: 28.84 kcal Atomic # 6 Polarization: 16.50 SS G_CDS: 5.27 Total: 21.77 kcal Atomic # 7 Polarization: -102.02 SS G_CDS: -2.81 Total: -104.83 kcal Atomic # 8 Polarization: -62.55 SS G_CDS: -0.36 Total: -62.91 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.75 Total: -2.89 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -77.24 4.57 -72.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607797784.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.022 kcal (2) G-P(sol) polarization free energy of solvation -77.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds