Wall clock time and date at job start Tue Mar 31 2020 20:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00070 * 2 1 4 4 H 1.48500 * 109.46889 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47068 * 300.00173 * 3 2 1 6 6 H 1.48505 * 109.47087 * 60.00112 * 3 2 1 7 7 C 1.37879 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99962 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99892 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47305 * 180.02562 * 9 7 2 11 11 C 1.34964 * 125.97827 * 124.99931 * 10 9 7 12 12 C 1.35244 * 107.85725 * 179.71133 * 11 10 9 13 13 C 1.40404 * 107.86769 * 0.42847 * 12 11 10 14 14 N 1.40197 * 125.97061 * 179.82983 * 13 12 11 15 15 C 1.34781 * 119.99880 * 359.71778 * 14 13 12 16 16 O 1.21584 * 120.00117 * 5.12405 * 15 14 13 17 17 N 1.34777 * 119.99714 * 185.12564 * 15 14 13 18 18 C 1.46921 * 120.62947 * 174.74813 * 17 15 14 19 19 C 1.53198 * 108.77232 * 126.41144 * 18 17 15 20 20 H 1.09008 * 109.49277 * 174.61537 * 19 18 17 21 21 O 1.42898 * 109.50153 * 294.68510 * 19 18 17 22 22 C 1.53041 * 109.34015 * 54.62285 * 19 18 17 23 23 C 1.53034 * 109.53663 * 298.68295 * 22 19 18 24 24 H 1.09004 * 109.50042 * 301.34766 * 23 22 19 25 25 C 1.50703 * 109.50019 * 181.28631 * 23 22 19 26 26 O 1.20823 * 119.99581 * 0.05976 * 25 23 22 27 27 O 1.34221 * 120.00228 * 180.33980 * 25 23 22 28 28 C 1.46927 * 120.63083 * 354.77238 * 17 15 14 29 29 N 1.31205 * 108.05350 * 359.56542 * 13 12 11 30 30 H 0.97003 * 119.99935 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.47215 * 60.00138 * 9 7 2 32 32 H 1.08996 * 109.47345 * 300.00139 * 9 7 2 33 33 H 1.08001 * 126.06691 * 359.97438 * 11 10 9 34 34 H 1.08000 * 126.06417 * 180.26397 * 12 11 10 35 35 H 0.96996 * 119.99711 * 179.71534 * 14 13 12 36 36 H 1.09000 * 109.58898 * 246.19534 * 18 17 15 37 37 H 1.08994 * 109.59041 * 6.48609 * 18 17 15 38 38 H 0.96702 * 113.99806 * 300.00199 * 21 19 18 39 39 H 1.08994 * 109.48851 * 178.64389 * 22 19 18 40 40 H 1.08997 * 109.43437 * 58.68218 * 22 19 18 41 41 H 0.96706 * 117.00188 * 179.72774 * 27 25 23 42 42 H 1.08998 * 109.59084 * 113.79897 * 28 17 15 43 43 H 1.09004 * 109.58990 * 353.37040 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.2419 -4.6224 0.8941 12 6 3.2565 -5.4461 0.5459 13 6 3.8682 -4.9151 -0.6009 14 7 4.9641 -5.4662 -1.2798 15 6 5.5281 -6.6067 -0.8350 16 8 5.0308 -7.2074 0.0978 17 7 6.6435 -7.0812 -1.4244 18 6 7.3348 -8.2580 -0.8804 19 6 7.5029 -9.2916 -1.9985 20 1 8.0981 -10.1288 -1.6335 21 8 6.2181 -9.7631 -2.4095 22 6 8.2119 -8.6405 -3.1883 23 6 7.3612 -7.4854 -3.7213 24 1 6.3824 -7.8616 -4.0190 25 6 8.0450 -6.8650 -4.9124 26 8 9.1037 -7.3023 -5.2967 27 8 7.4806 -5.8231 -5.5428 28 6 7.1914 -6.4313 -2.6228 29 7 3.2315 -3.8159 -0.9294 30 1 -0.4850 0.8401 0.0004 31 1 0.6240 -2.5567 -0.8903 32 1 0.6247 -2.5571 0.8896 33 1 1.5779 -4.7521 1.7360 34 1 3.5464 -6.3504 1.0603 35 1 5.3162 -5.0268 -2.0695 36 1 8.3146 -7.9645 -0.5037 37 1 6.7450 -8.6861 -0.0699 38 1 5.7103 -10.1865 -1.7038 39 1 8.3544 -9.3802 -3.9760 40 1 9.1818 -8.2596 -2.8684 41 1 7.9586 -5.4563 -6.2992 42 1 8.1595 -5.9888 -2.3882 43 1 6.5057 -5.6556 -2.9636 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608183506.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:05 Heat of formation + Delta-G solvation = -71.550753 kcal Electronic energy + Delta-G solvation = -29355.176883 eV Core-core repulsion = 25017.049991 eV Total energy + Delta-G solvation = -4338.126892 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.33179 -40.62765 -39.89542 -38.32390 -36.53650 -35.84205 -34.81609 -33.39720 -32.97891 -31.19094 -30.45610 -29.27363 -26.84419 -25.86814 -25.25117 -23.25059 -22.41504 -21.37027 -20.56331 -20.19742 -19.35996 -18.48967 -18.28399 -17.36556 -16.99547 -16.72003 -16.57059 -16.33368 -15.58751 -15.50558 -15.02143 -14.88259 -14.58225 -14.30930 -14.22562 -13.95447 -13.82476 -13.49021 -13.28722 -12.79747 -12.43959 -12.24457 -12.18334 -11.94529 -11.84630 -11.76221 -11.64593 -11.33312 -11.07205 -10.93291 -10.87341 -10.58247 -10.41424 -10.25833 -10.09148 -9.67846 -9.47788 -8.95303 -8.63285 -8.10205 -7.41619 -6.23988 -4.28841 1.73253 2.18523 2.58128 2.64963 3.06343 3.22289 3.29808 3.31932 3.37889 3.78246 3.81595 4.01226 4.08233 4.26727 4.32522 4.39613 4.45144 4.70906 4.88125 4.93168 5.10723 5.11344 5.19894 5.24421 5.31862 5.52050 5.56101 5.65520 5.80594 5.98871 6.10121 6.28346 6.53444 6.55272 6.79252 6.94850 7.08663 7.29633 7.47255 7.47558 7.68941 7.76778 7.92610 8.06977 8.49286 8.66244 8.81591 9.36800 10.84775 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014693 B = 0.002622 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.242628 B =10675.995473 C =12046.113866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.069 0.931 9 C 0.258 3.742 10 N -0.320 5.320 11 C 0.051 3.949 12 C -0.286 4.286 13 C 0.274 3.726 14 N -0.643 5.643 15 C 0.723 3.277 16 O -0.563 6.563 17 N -0.619 5.619 18 C 0.095 3.905 19 C 0.092 3.908 20 H 0.076 0.924 21 O -0.560 6.560 22 C -0.096 4.096 23 C -0.092 4.092 24 H 0.126 0.874 25 C 0.487 3.513 26 O -0.513 6.513 27 O -0.511 6.511 28 C 0.121 3.879 29 N -0.306 5.306 30 H 0.266 0.734 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.167 0.833 34 H 0.160 0.840 35 H 0.406 0.594 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.384 0.616 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.413 0.587 42 H 0.079 0.921 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.402 -17.939 -5.723 24.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.088 0.912 9 C 0.141 3.859 10 N -0.102 5.102 11 C -0.099 4.099 12 C -0.317 4.317 13 C 0.020 3.980 14 N -0.294 5.294 15 C 0.424 3.576 16 O -0.439 6.439 17 N -0.357 5.357 18 C -0.029 4.029 19 C 0.032 3.968 20 H 0.094 0.906 21 O -0.366 6.366 22 C -0.134 4.134 23 C -0.112 4.112 24 H 0.144 0.856 25 C 0.328 3.672 26 O -0.401 6.401 27 O -0.323 6.323 28 C -0.003 4.003 29 N -0.137 5.137 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.185 0.815 34 H 0.177 0.823 35 H 0.243 0.757 36 H 0.096 0.904 37 H 0.123 0.877 38 H 0.232 0.768 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.273 0.727 42 H 0.097 0.903 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 15.990 -17.205 -6.176 24.287 hybrid contribution 0.755 0.635 0.032 0.987 sum 16.746 -16.570 -6.145 24.346 Atomic orbital electron populations 1.69928 1.06042 1.27499 1.49915 1.24948 0.94977 0.99549 0.94650 0.86281 0.80056 0.82503 0.77705 1.19574 1.20701 1.20790 1.21303 0.94035 0.89384 1.51828 0.91246 1.19740 0.85618 0.81310 0.99260 1.49060 1.23228 1.19776 1.18119 1.22550 1.00368 0.90173 0.96784 1.21473 1.02175 1.06209 1.01853 1.18787 0.90744 0.94093 0.94342 1.41572 1.31539 1.25044 1.31290 1.15412 0.79710 0.80361 0.82145 1.90851 1.62988 1.59386 1.30648 1.46950 1.27207 1.32102 1.29444 1.22316 0.97974 0.85590 0.97005 1.22197 0.85609 0.95080 0.93954 0.90628 1.86489 1.29417 1.79807 1.40932 1.21458 0.97646 0.96296 0.97973 1.21355 1.02439 0.96561 0.90876 0.85599 1.23283 0.83071 0.77176 0.83625 1.90730 1.22553 1.61235 1.65583 1.84561 1.54813 1.46147 1.46804 1.21540 1.00813 0.93845 0.84113 1.77326 1.03757 1.16388 1.16270 0.92394 0.93724 0.92544 0.81528 0.82269 0.75687 0.90406 0.87731 0.76791 0.89734 0.89299 0.72747 0.90275 0.88816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.27 13.29 55.43 0.74 -24.53 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.91 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -14.61 9.24 -34.44 -0.32 -14.92 16 8 H 0.07 2.00 7.81 -52.48 -0.41 1.58 16 9 C 0.26 6.54 6.26 -5.20 -0.03 6.51 16 10 N -0.32 -7.42 3.67 -62.56 -0.23 -7.65 16 11 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 12 C -0.29 -5.63 9.61 -39.83 -0.38 -6.01 16 13 C 0.27 5.50 8.11 -154.36 -1.25 4.25 16 14 N -0.64 -10.06 5.36 -15.51 -0.08 -10.14 16 15 C 0.72 10.37 8.26 -86.91 -0.72 9.66 16 16 O -0.56 -9.56 12.91 5.29 0.07 -9.49 16 17 N -0.62 -6.18 2.91 -178.50 -0.52 -6.70 16 18 C 0.09 0.71 6.08 -3.71 -0.02 0.68 16 19 C 0.09 0.57 3.81 -26.61 -0.10 0.47 16 20 H 0.08 0.32 8.14 -51.92 -0.42 -0.10 16 21 O -0.56 -4.51 12.51 -35.23 -0.44 -4.95 16 22 C -0.10 -0.65 4.21 -26.69 -0.11 -0.76 16 23 C -0.09 -0.71 2.64 -91.65 -0.24 -0.95 16 24 H 0.13 1.11 7.61 -51.93 -0.40 0.71 16 25 C 0.49 4.03 7.63 36.01 0.27 4.30 16 26 O -0.51 -5.52 16.74 -18.75 -0.31 -5.83 16 27 O -0.51 -3.43 13.35 -39.23 -0.52 -3.96 16 28 C 0.12 0.96 5.60 -3.71 -0.02 0.94 16 29 N -0.31 -7.03 12.42 31.44 0.39 -6.64 16 30 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 31 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 33 H 0.17 2.69 8.06 -52.49 -0.42 2.27 16 34 H 0.16 3.05 5.93 -52.49 -0.31 2.74 16 35 H 0.41 5.36 6.31 -40.82 -0.26 5.10 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.10 0.88 6.99 -51.93 -0.36 0.52 16 38 H 0.38 2.15 9.08 45.56 0.41 2.56 16 39 H 0.08 0.63 8.07 -51.93 -0.42 0.21 16 40 H 0.09 0.53 8.13 -51.93 -0.42 0.11 16 41 H 0.41 1.14 9.10 45.56 0.41 1.55 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.76 5.65 -51.93 -0.29 0.46 16 LS Contribution 364.04 15.07 5.49 5.49 Total: -1.00 -36.00 364.04 -7.38 -43.38 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -3.71 Total: 8.20 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: -3.22 Total: 6.57 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: 0.29 Total: -55.65 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -1.21 Total: -24.23 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.00 -7.38 -43.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183506.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.166 kcal (2) G-P(sol) polarization free energy of solvation -36.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds