Wall clock time and date at job start Tue Mar 31 2020 20:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00070 * 2 1 4 4 H 1.48500 * 109.46889 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47068 * 300.00173 * 3 2 1 6 6 H 1.48505 * 109.47087 * 60.00112 * 3 2 1 7 7 C 1.37879 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99962 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99892 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47305 * 180.02562 * 9 7 2 11 11 C 1.34964 * 125.97827 * 124.99931 * 10 9 7 12 12 C 1.35244 * 107.85725 * 179.71133 * 11 10 9 13 13 C 1.40404 * 107.86769 * 0.42847 * 12 11 10 14 14 N 1.40197 * 125.97061 * 179.82983 * 13 12 11 15 15 C 1.34781 * 119.99880 * 359.71778 * 14 13 12 16 16 O 1.21584 * 120.00117 * 5.12405 * 15 14 13 17 17 N 1.34777 * 119.99714 * 185.12564 * 15 14 13 18 18 C 1.46921 * 120.62947 * 174.74813 * 17 15 14 19 19 C 1.53198 * 108.77232 * 126.41144 * 18 17 15 20 20 H 1.09008 * 109.49277 * 174.61537 * 19 18 17 21 21 O 1.42898 * 109.50153 * 294.68510 * 19 18 17 22 22 C 1.53041 * 109.34015 * 54.62285 * 19 18 17 23 23 C 1.53034 * 109.53663 * 298.68295 * 22 19 18 24 24 H 1.09004 * 109.50042 * 301.34766 * 23 22 19 25 25 C 1.50703 * 109.50019 * 181.28631 * 23 22 19 26 26 O 1.20823 * 119.99581 * 0.05976 * 25 23 22 27 27 O 1.34221 * 120.00228 * 180.33980 * 25 23 22 28 28 C 1.46927 * 120.63083 * 354.77238 * 17 15 14 29 29 N 1.31205 * 108.05350 * 359.56542 * 13 12 11 30 30 H 0.97003 * 119.99935 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.47215 * 60.00138 * 9 7 2 32 32 H 1.08996 * 109.47345 * 300.00139 * 9 7 2 33 33 H 1.08001 * 126.06691 * 359.97438 * 11 10 9 34 34 H 1.08000 * 126.06417 * 180.26397 * 12 11 10 35 35 H 0.96996 * 119.99711 * 179.71534 * 14 13 12 36 36 H 1.09000 * 109.58898 * 246.19534 * 18 17 15 37 37 H 1.08994 * 109.59041 * 6.48609 * 18 17 15 38 38 H 0.96702 * 113.99806 * 300.00199 * 21 19 18 39 39 H 1.08994 * 109.48851 * 178.64389 * 22 19 18 40 40 H 1.08997 * 109.43437 * 58.68218 * 22 19 18 41 41 H 0.96706 * 117.00188 * 179.72774 * 27 25 23 42 42 H 1.08998 * 109.59084 * 113.79897 * 28 17 15 43 43 H 1.09004 * 109.58990 * 353.37040 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.2419 -4.6224 0.8941 12 6 3.2565 -5.4461 0.5459 13 6 3.8682 -4.9151 -0.6009 14 7 4.9641 -5.4662 -1.2798 15 6 5.5281 -6.6067 -0.8350 16 8 5.0308 -7.2074 0.0978 17 7 6.6435 -7.0812 -1.4244 18 6 7.3348 -8.2580 -0.8804 19 6 7.5029 -9.2916 -1.9985 20 1 8.0981 -10.1288 -1.6335 21 8 6.2181 -9.7631 -2.4095 22 6 8.2119 -8.6405 -3.1883 23 6 7.3612 -7.4854 -3.7213 24 1 6.3824 -7.8616 -4.0190 25 6 8.0450 -6.8650 -4.9124 26 8 9.1037 -7.3023 -5.2967 27 8 7.4806 -5.8231 -5.5428 28 6 7.1914 -6.4313 -2.6228 29 7 3.2315 -3.8159 -0.9294 30 1 -0.4850 0.8401 0.0004 31 1 0.6240 -2.5567 -0.8903 32 1 0.6247 -2.5571 0.8896 33 1 1.5779 -4.7521 1.7360 34 1 3.5464 -6.3504 1.0603 35 1 5.3162 -5.0268 -2.0695 36 1 8.3146 -7.9645 -0.5037 37 1 6.7450 -8.6861 -0.0699 38 1 5.7103 -10.1865 -1.7038 39 1 8.3544 -9.3802 -3.9760 40 1 9.1818 -8.2596 -2.8684 41 1 7.9586 -5.4563 -6.2992 42 1 8.1595 -5.9888 -2.3882 43 1 6.5057 -5.6556 -2.9636 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608183506.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:04 Heat of formation + Delta-G solvation = -99.242564 kcal Electronic energy + Delta-G solvation = -29356.377690 eV Core-core repulsion = 25017.049991 eV Total energy + Delta-G solvation = -4339.327699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.36539 -41.75298 -40.95970 -39.14687 -37.16595 -36.59901 -36.23090 -35.23712 -33.82491 -32.70531 -31.36919 -30.85843 -28.59512 -26.78888 -25.94273 -24.95670 -23.37233 -22.50033 -21.83779 -21.18421 -20.47389 -19.38269 -19.07960 -18.67424 -18.18232 -17.97166 -17.63632 -17.27121 -16.88424 -16.55503 -16.28391 -15.96874 -15.63201 -15.45837 -15.28038 -14.99926 -14.76811 -14.44216 -14.26782 -14.11325 -13.96739 -13.77249 -13.59954 -12.96788 -12.84589 -12.71740 -12.57188 -12.42948 -12.30902 -12.26850 -12.06397 -11.94682 -11.63088 -11.58430 -11.37349 -11.20711 -10.94301 -10.70951 -9.84782 -9.65291 -9.02061 -8.31395 -6.45412 1.00279 1.11447 1.14665 1.38380 1.39836 1.52856 1.69415 1.91404 2.13233 2.36537 2.39617 2.78545 3.00274 3.29442 3.45957 3.66267 3.79645 3.88245 3.99535 4.12709 4.23197 4.32765 4.38252 4.57907 4.62737 4.65195 4.75121 4.83551 4.93177 4.97101 4.98504 5.03619 5.12256 5.14983 5.45364 5.57633 5.57773 5.66790 5.84910 5.98123 6.31452 6.55724 6.68364 6.85463 6.94763 7.11743 7.24625 7.35454 8.76279 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014693 B = 0.002622 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.242628 B =10675.995473 C =12046.113866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.018 3.982 3 Si 0.972 3.028 4 H -0.274 1.274 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.546 4.546 8 H 0.053 0.947 9 C 0.273 3.727 10 N -0.345 5.345 11 C 0.056 3.944 12 C -0.290 4.290 13 C 0.283 3.717 14 N -0.639 5.639 15 C 0.719 3.281 16 O -0.592 6.592 17 N -0.607 5.607 18 C 0.090 3.910 19 C 0.098 3.902 20 H 0.105 0.895 21 O -0.581 6.581 22 C -0.095 4.095 23 C -0.087 4.087 24 H 0.114 0.886 25 C 0.495 3.505 26 O -0.539 6.539 27 O -0.512 6.512 28 C 0.118 3.882 29 N -0.348 5.348 30 H 0.272 0.728 31 H 0.021 0.979 32 H 0.059 0.941 33 H 0.201 0.799 34 H 0.168 0.832 35 H 0.416 0.584 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.393 0.607 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.430 0.570 42 H 0.101 0.899 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.189 -18.287 -5.557 26.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.182 4.182 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.584 4.584 8 H 0.071 0.929 9 C 0.154 3.846 10 N -0.127 5.127 11 C -0.092 4.092 12 C -0.321 4.321 13 C 0.028 3.972 14 N -0.293 5.293 15 C 0.420 3.580 16 O -0.469 6.469 17 N -0.344 5.344 18 C -0.032 4.032 19 C 0.038 3.962 20 H 0.122 0.878 21 O -0.389 6.389 22 C -0.133 4.133 23 C -0.107 4.107 24 H 0.132 0.868 25 C 0.337 3.663 26 O -0.429 6.429 27 O -0.326 6.326 28 C -0.005 4.005 29 N -0.179 5.179 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.218 0.782 34 H 0.186 0.814 35 H 0.255 0.745 36 H 0.121 0.879 37 H 0.114 0.886 38 H 0.242 0.758 39 H 0.096 0.904 40 H 0.120 0.880 41 H 0.292 0.708 42 H 0.119 0.881 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 17.818 -17.580 -6.044 25.751 hybrid contribution 0.267 0.625 -0.073 0.683 sum 18.085 -16.956 -6.118 25.534 Atomic orbital electron populations 1.70003 1.07228 1.28674 1.50129 1.25741 0.95831 1.02731 0.93941 0.85296 0.78440 0.78386 0.78258 1.19837 1.19885 1.19574 1.21437 0.93401 0.90961 1.52569 0.92908 1.19329 0.85678 0.81539 0.98072 1.48815 1.23881 1.20402 1.19615 1.23162 1.00541 0.88790 0.96737 1.21659 1.02156 1.06400 1.01892 1.19094 0.90889 0.93040 0.94190 1.41628 1.30594 1.25563 1.31500 1.15580 0.80472 0.79821 0.82096 1.90818 1.64078 1.60024 1.32005 1.47002 1.25616 1.32368 1.29400 1.22600 0.98517 0.84878 0.97244 1.22277 0.85300 0.95448 0.93176 0.87790 1.86464 1.30402 1.80044 1.41977 1.21498 0.98092 0.95739 0.97962 1.21282 1.02047 0.96741 0.90632 0.86823 1.23278 0.82485 0.77020 0.83496 1.90725 1.23673 1.62079 1.66390 1.84534 1.54995 1.45577 1.47525 1.21698 1.01609 0.93803 0.83390 1.77242 1.04909 1.18274 1.17501 0.91872 0.96134 0.92351 0.78212 0.81430 0.74487 0.87933 0.88646 0.75778 0.90367 0.87976 0.70763 0.88124 0.89113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.19 13.29 21.45 0.28 -51.90 16 2 C 0.02 0.98 5.46 84.66 0.46 1.44 16 3 Si 0.97 43.46 29.54 68.60 2.03 45.49 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.55 -30.76 9.24 25.60 0.24 -30.52 16 8 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 9 C 0.27 14.16 6.26 85.63 0.54 14.70 16 10 N -0.35 -16.25 3.67 -351.85 -1.29 -17.54 16 11 C 0.06 2.21 11.44 83.52 0.96 3.16 16 12 C -0.29 -11.29 9.61 22.11 0.21 -11.08 16 13 C 0.28 11.36 8.11 133.31 1.08 12.44 16 14 N -0.64 -19.67 5.36 -321.23 -1.72 -21.39 16 15 C 0.72 19.93 8.26 179.05 1.48 21.41 16 16 O -0.59 -19.61 12.91 -3.98 -0.05 -19.66 16 17 N -0.61 -11.07 2.91 -836.90 -2.44 -13.50 16 18 C 0.09 1.13 6.08 86.37 0.53 1.66 16 19 C 0.10 0.99 3.81 30.67 0.12 1.10 16 20 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 21 O -0.58 -8.52 12.51 -148.98 -1.86 -10.38 16 22 C -0.10 -1.09 4.21 30.62 0.13 -0.96 16 23 C -0.09 -1.20 2.64 -11.46 -0.03 -1.23 16 24 H 0.11 1.90 7.61 -2.39 -0.02 1.88 16 25 C 0.49 7.46 7.63 71.24 0.54 8.01 16 26 O -0.54 -10.83 16.74 21.97 0.37 -10.46 16 27 O -0.51 -6.13 13.35 -51.33 -0.69 -6.81 16 28 C 0.12 1.66 5.60 86.36 0.48 2.15 16 29 N -0.35 -16.25 12.42 -54.43 -0.68 -16.93 16 30 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 31 H 0.02 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.06 2.96 8.07 -2.39 -0.02 2.94 16 33 H 0.20 6.19 8.06 -2.91 -0.02 6.16 16 34 H 0.17 6.28 5.93 -2.91 -0.02 6.26 16 35 H 0.42 10.76 6.31 -92.71 -0.59 10.18 16 36 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.10 1.45 6.99 -2.39 -0.02 1.43 16 38 H 0.39 3.96 9.08 -74.06 -0.67 3.29 16 39 H 0.08 1.03 8.07 -2.39 -0.02 1.01 16 40 H 0.10 0.91 8.13 -2.39 -0.02 0.89 16 41 H 0.43 1.70 9.10 -74.05 -0.67 1.03 16 42 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.09 1.34 5.65 -2.39 -0.01 1.33 16 Total: -1.00 -77.59 364.04 -0.15 -77.74 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: -0.83 Total: 23.08 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: 6.73 Total: 22.28 kcal Atomic # 7 Polarization: -115.42 SS G_CDS: -5.84 Total: -121.26 kcal Atomic # 8 Polarization: -45.09 SS G_CDS: -2.23 Total: -47.32 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -77.59 -0.15 -77.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183506.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.504 kcal (2) G-P(sol) polarization free energy of solvation -77.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds