Wall clock time and date at job start Tue Mar 31 2020 20:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00353 * 2 1 4 4 H 1.48495 * 109.46854 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47068 * 120.00223 * 3 2 1 6 6 H 1.48504 * 109.46870 * 239.99980 * 3 2 1 7 7 C 1.37875 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00433 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00354 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47658 * 180.02562 * 9 7 2 11 11 C 1.34964 * 125.97690 * 124.71356 * 10 9 7 12 12 C 1.35241 * 107.86018 * 179.89779 * 11 10 9 13 13 C 1.40403 * 107.86707 * 0.37231 * 12 11 10 14 14 N 1.40194 * 125.97633 * 179.73973 * 13 12 11 15 15 C 1.34785 * 119.99587 * 0.02562 * 14 13 12 16 16 O 1.21586 * 120.00164 * 354.86422 * 15 14 13 17 17 N 1.34775 * 119.99748 * 174.86958 * 15 14 13 18 18 C 1.46930 * 120.63204 * 4.94153 * 17 15 14 19 19 C 1.53618 * 108.54537 * 126.36821 * 18 17 15 20 20 H 1.08998 * 109.66044 * 294.84866 * 19 18 17 21 21 C 1.50695 * 109.43321 * 174.72168 * 19 18 17 22 22 O 1.20829 * 120.00616 * 240.29116 * 21 19 18 23 23 O 1.34231 * 120.00001 * 60.28926 * 21 19 18 24 24 C 1.53040 * 109.24353 * 54.85755 * 19 18 17 25 25 C 1.53044 * 109.53451 * 298.51098 * 24 19 18 26 26 H 1.09002 * 109.52625 * 301.39532 * 25 24 19 27 27 O 1.42907 * 109.49782 * 181.31347 * 25 24 19 28 28 C 1.46931 * 120.63089 * 185.21855 * 17 15 14 29 29 N 1.31212 * 108.05548 * 359.76604 * 13 12 11 30 30 H 0.97000 * 120.00500 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47026 * 300.00733 * 9 7 2 32 32 H 1.09007 * 109.46722 * 59.99718 * 9 7 2 33 33 H 1.08005 * 126.07222 * 0.02562 * 11 10 9 34 34 H 1.07997 * 126.07066 * 180.13646 * 12 11 10 35 35 H 0.96999 * 120.00670 * 180.02562 * 14 13 12 36 36 H 1.09003 * 109.57963 * 246.20293 * 18 17 15 37 37 H 1.08998 * 109.58558 * 6.61942 * 18 17 15 38 38 H 0.96698 * 117.00405 * 180.02562 * 23 21 19 39 39 H 1.09001 * 109.46497 * 178.49025 * 24 19 18 40 40 H 1.08996 * 109.45421 * 58.52068 * 24 19 18 41 41 H 0.96696 * 114.00040 * 180.15456 * 27 25 24 42 42 H 1.08995 * 109.58417 * 353.37647 * 28 17 15 43 43 H 1.09000 * 109.58572 * 113.65273 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2028 -3.6127 0.0027 11 6 2.2452 -4.6187 0.9014 12 6 3.2610 -5.4417 0.5551 13 6 3.8693 -4.9147 -0.5953 14 7 4.9662 -5.4655 -1.2727 15 6 5.5312 -6.6048 -0.8261 16 8 5.1510 -7.1044 0.2151 17 7 6.5177 -7.1901 -1.5336 18 6 7.0622 -6.5435 -2.7354 19 6 8.5874 -6.4386 -2.5853 20 1 8.8295 -5.7705 -1.7588 21 6 9.1807 -5.8969 -3.8603 22 8 9.9820 -6.5545 -4.4810 23 8 8.8188 -4.6837 -4.3064 24 6 9.1634 -7.8284 -2.3042 25 6 8.5864 -8.3657 -0.9925 26 1 8.8280 -7.6801 -0.1803 27 8 9.1479 -9.6503 -0.7152 28 6 7.0650 -8.4899 -1.1213 29 7 3.2321 -3.8162 -0.9254 30 1 -0.4851 -0.8400 0.0004 31 1 0.6246 -2.5563 0.8919 32 1 0.6239 -2.5575 -0.8881 33 1 1.5839 -4.7454 1.7459 34 1 3.5549 -6.3422 1.0739 35 1 5.3186 -5.0267 -2.0628 36 1 6.8189 -7.1413 -3.6139 37 1 6.6344 -5.5464 -2.8395 38 1 9.2259 -4.3790 -5.1289 39 1 10.2484 -7.7624 -2.2236 40 1 8.9001 -8.5021 -3.1196 41 1 8.8245 -10.0527 0.1024 42 1 6.6390 -8.7773 -0.1601 43 1 6.8198 -9.2436 -1.8696 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608183508.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:13 Heat of formation + Delta-G solvation = -74.790082 kcal Electronic energy + Delta-G solvation = -29151.665151 eV Core-core repulsion = 24813.397792 eV Total energy + Delta-G solvation = -4338.267359 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.41715 -40.74574 -39.99927 -38.40681 -36.62672 -36.26163 -35.00907 -33.74242 -33.13071 -31.14144 -30.31857 -29.39270 -26.64944 -25.76920 -25.33362 -23.25846 -22.50000 -21.50221 -20.79141 -20.36861 -19.43257 -18.58758 -18.37752 -17.72299 -17.20615 -16.99236 -16.79589 -16.36858 -15.97118 -15.60651 -15.21506 -14.85847 -14.50672 -14.36070 -14.06747 -13.85612 -13.78063 -13.55962 -13.25585 -13.11149 -12.89737 -12.49496 -12.26697 -12.00219 -11.95777 -11.82245 -11.72337 -11.24708 -11.18671 -11.02981 -10.84705 -10.69502 -10.52633 -10.22046 -10.17771 -9.80454 -9.16282 -8.99071 -8.59812 -8.23592 -7.53147 -6.59700 -4.33887 1.63585 2.01320 2.42246 2.52662 2.92580 3.18526 3.36503 3.37980 3.57052 3.58912 3.66936 3.89361 4.07301 4.16814 4.32456 4.34764 4.39610 4.61353 4.78278 4.83594 4.98583 5.10425 5.13979 5.18980 5.29552 5.41141 5.54381 5.66033 5.66531 5.84680 6.02499 6.13884 6.35924 6.40399 6.60555 6.66979 6.78343 7.14988 7.33545 7.39490 7.55123 7.73489 7.81338 8.32390 8.35338 8.51813 8.60189 9.34353 10.77870 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013750 B = 0.002621 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.879780 B =10681.119474 C =12269.033006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.023 3.977 3 Si 1.077 2.923 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.608 4.608 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.318 5.318 11 C 0.051 3.949 12 C -0.283 4.283 13 C 0.275 3.725 14 N -0.642 5.642 15 C 0.721 3.279 16 O -0.560 6.560 17 N -0.623 5.623 18 C 0.118 3.882 19 C -0.094 4.094 20 H 0.121 0.879 21 C 0.489 3.511 22 O -0.507 6.507 23 O -0.511 6.511 24 C -0.099 4.099 25 C 0.095 3.905 26 H 0.066 0.934 27 O -0.559 6.559 28 C 0.097 3.903 29 N -0.303 5.303 30 H 0.267 0.733 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.168 0.832 34 H 0.162 0.838 35 H 0.407 0.593 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.415 0.585 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.385 0.615 42 H 0.103 0.897 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.074 -16.195 -4.888 24.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.182 4.182 3 Si 0.903 3.097 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.646 4.646 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.100 5.100 11 C -0.098 4.098 12 C -0.315 4.315 13 C 0.021 3.979 14 N -0.294 5.294 15 C 0.421 3.579 16 O -0.435 6.435 17 N -0.363 5.363 18 C -0.006 4.006 19 C -0.114 4.114 20 H 0.139 0.861 21 C 0.330 3.670 22 O -0.394 6.394 23 O -0.323 6.323 24 C -0.137 4.137 25 C 0.035 3.965 26 H 0.084 0.916 27 O -0.364 6.364 28 C -0.027 4.027 29 N -0.133 5.133 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.185 0.815 34 H 0.179 0.821 35 H 0.244 0.756 36 H 0.102 0.898 37 H 0.115 0.885 38 H 0.275 0.725 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.233 0.767 42 H 0.122 0.878 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 16.764 -14.070 -5.314 22.522 hybrid contribution 0.429 -1.876 0.050 1.925 sum 17.193 -15.947 -5.263 24.033 Atomic orbital electron populations 1.70849 1.06788 1.30443 1.45941 1.25920 0.96308 1.02806 0.93138 0.83422 0.74814 0.74573 0.76842 1.20533 1.21232 1.21131 1.22105 0.95382 0.90436 1.56704 0.91830 1.19757 0.86297 0.82812 0.97993 1.48776 1.23267 1.19665 1.18243 1.22557 1.00437 0.90197 0.96641 1.21489 1.01971 1.06377 1.01635 1.18782 0.90627 0.94084 0.94436 1.41565 1.31314 1.24996 1.31497 1.15438 0.79440 0.80014 0.82958 1.90872 1.64683 1.65187 1.22708 1.47028 1.38587 1.22220 1.28473 1.21691 0.90554 0.99662 0.88670 1.21413 0.96648 0.98903 0.94424 0.86149 1.23002 0.78995 0.78882 0.86125 1.90759 1.32544 1.58878 1.57269 1.84543 1.67656 1.34483 1.45593 1.21330 1.01826 0.93164 0.97338 1.22042 0.91558 0.85676 0.97264 0.91584 1.86512 1.69361 1.33053 1.47472 1.22295 0.93375 0.83692 1.03301 1.77351 1.03587 1.16059 1.16346 0.92265 0.93613 0.94779 0.81491 0.82102 0.75555 0.89820 0.88497 0.72505 0.89556 0.89685 0.76689 0.87830 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.11 13.65 55.43 0.76 -25.35 16 2 C 0.02 0.63 5.46 -17.82 -0.10 0.54 16 3 Si 1.08 24.62 29.90 -169.99 -5.08 19.53 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.29 -6.30 7.11 56.52 0.40 -5.89 16 7 C -0.61 -16.90 9.24 -34.44 -0.32 -17.22 16 8 H 0.06 1.84 7.81 -52.48 -0.41 1.43 16 9 C 0.25 6.23 5.57 -5.20 -0.03 6.20 16 10 N -0.32 -7.30 3.67 -62.56 -0.23 -7.53 16 11 C 0.05 1.01 11.43 -17.24 -0.20 0.81 16 12 C -0.28 -5.47 9.61 -39.83 -0.38 -5.86 16 13 C 0.27 5.38 8.11 -154.36 -1.25 4.12 16 14 N -0.64 -9.58 5.36 -15.50 -0.08 -9.66 16 15 C 0.72 9.92 8.26 -86.91 -0.72 9.20 16 16 O -0.56 -9.33 12.91 5.29 0.07 -9.26 16 17 N -0.62 -5.90 2.97 -178.23 -0.53 -6.43 16 18 C 0.12 0.85 5.64 -3.49 -0.02 0.83 16 19 C -0.09 -0.63 2.79 -91.43 -0.26 -0.88 16 20 H 0.12 0.75 8.14 -51.93 -0.42 0.32 16 21 C 0.49 3.71 7.62 36.00 0.27 3.98 16 22 O -0.51 -5.32 16.74 -18.75 -0.31 -5.64 16 23 O -0.51 -3.02 13.36 -39.26 -0.52 -3.55 16 24 C -0.10 -0.72 4.11 -26.69 -0.11 -0.83 16 25 C 0.09 0.66 3.62 -26.61 -0.10 0.56 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 O -0.56 -3.90 13.32 -35.23 -0.47 -4.37 16 28 C 0.10 0.76 6.06 -3.71 -0.02 0.74 16 29 N -0.30 -6.85 12.42 31.44 0.39 -6.46 16 30 H 0.27 7.53 7.22 -40.82 -0.29 7.23 16 31 H 0.05 1.10 7.94 -51.93 -0.41 0.69 16 32 H 0.03 0.89 8.01 -51.92 -0.42 0.47 16 33 H 0.17 2.65 8.06 -52.48 -0.42 2.23 16 34 H 0.16 3.01 5.93 -52.49 -0.31 2.70 16 35 H 0.41 5.00 6.31 -40.82 -0.26 4.74 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.10 0.67 5.64 -51.93 -0.29 0.38 16 38 H 0.42 0.87 9.10 45.56 0.41 1.28 16 39 H 0.09 0.69 8.07 -51.93 -0.42 0.27 16 40 H 0.08 0.67 8.13 -51.93 -0.42 0.24 16 41 H 0.39 1.20 9.08 45.56 0.41 1.62 16 42 H 0.10 0.90 6.99 -51.93 -0.36 0.54 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 364.00 15.07 5.49 5.49 Total: -1.00 -36.90 364.00 -7.43 -44.33 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -3.68 Total: 6.69 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -3.22 Total: 2.20 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: 0.31 Total: -55.43 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -1.24 Total: -22.81 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -5.08 Total: 19.53 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.90 -7.43 -44.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183508.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.459 kcal (2) G-P(sol) polarization free energy of solvation -36.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds