Wall clock time and date at job start Tue Mar 31 2020 20:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00353 * 2 1 4 4 H 1.48495 * 109.46854 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47068 * 120.00223 * 3 2 1 6 6 H 1.48504 * 109.46870 * 239.99980 * 3 2 1 7 7 C 1.37875 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00433 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00354 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47658 * 180.02562 * 9 7 2 11 11 C 1.34964 * 125.97690 * 124.71356 * 10 9 7 12 12 C 1.35241 * 107.86018 * 179.89779 * 11 10 9 13 13 C 1.40403 * 107.86707 * 0.37231 * 12 11 10 14 14 N 1.40194 * 125.97633 * 179.73973 * 13 12 11 15 15 C 1.34785 * 119.99587 * 0.02562 * 14 13 12 16 16 O 1.21586 * 120.00164 * 354.86422 * 15 14 13 17 17 N 1.34775 * 119.99748 * 174.86958 * 15 14 13 18 18 C 1.46930 * 120.63204 * 4.94153 * 17 15 14 19 19 C 1.53618 * 108.54537 * 126.36821 * 18 17 15 20 20 H 1.08998 * 109.66044 * 294.84866 * 19 18 17 21 21 C 1.50695 * 109.43321 * 174.72168 * 19 18 17 22 22 O 1.20829 * 120.00616 * 240.29116 * 21 19 18 23 23 O 1.34231 * 120.00001 * 60.28926 * 21 19 18 24 24 C 1.53040 * 109.24353 * 54.85755 * 19 18 17 25 25 C 1.53044 * 109.53451 * 298.51098 * 24 19 18 26 26 H 1.09002 * 109.52625 * 301.39532 * 25 24 19 27 27 O 1.42907 * 109.49782 * 181.31347 * 25 24 19 28 28 C 1.46931 * 120.63089 * 185.21855 * 17 15 14 29 29 N 1.31212 * 108.05548 * 359.76604 * 13 12 11 30 30 H 0.97000 * 120.00500 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47026 * 300.00733 * 9 7 2 32 32 H 1.09007 * 109.46722 * 59.99718 * 9 7 2 33 33 H 1.08005 * 126.07222 * 0.02562 * 11 10 9 34 34 H 1.07997 * 126.07066 * 180.13646 * 12 11 10 35 35 H 0.96999 * 120.00670 * 180.02562 * 14 13 12 36 36 H 1.09003 * 109.57963 * 246.20293 * 18 17 15 37 37 H 1.08998 * 109.58558 * 6.61942 * 18 17 15 38 38 H 0.96698 * 117.00405 * 180.02562 * 23 21 19 39 39 H 1.09001 * 109.46497 * 178.49025 * 24 19 18 40 40 H 1.08996 * 109.45421 * 58.52068 * 24 19 18 41 41 H 0.96696 * 114.00040 * 180.15456 * 27 25 24 42 42 H 1.08995 * 109.58417 * 353.37647 * 28 17 15 43 43 H 1.09000 * 109.58572 * 113.65273 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2028 -3.6127 0.0027 11 6 2.2452 -4.6187 0.9014 12 6 3.2610 -5.4417 0.5551 13 6 3.8693 -4.9147 -0.5953 14 7 4.9662 -5.4655 -1.2727 15 6 5.5312 -6.6048 -0.8261 16 8 5.1510 -7.1044 0.2151 17 7 6.5177 -7.1901 -1.5336 18 6 7.0622 -6.5435 -2.7354 19 6 8.5874 -6.4386 -2.5853 20 1 8.8295 -5.7705 -1.7588 21 6 9.1807 -5.8969 -3.8603 22 8 9.9820 -6.5545 -4.4810 23 8 8.8188 -4.6837 -4.3064 24 6 9.1634 -7.8284 -2.3042 25 6 8.5864 -8.3657 -0.9925 26 1 8.8280 -7.6801 -0.1803 27 8 9.1479 -9.6503 -0.7152 28 6 7.0650 -8.4899 -1.1213 29 7 3.2321 -3.8162 -0.9254 30 1 -0.4851 -0.8400 0.0004 31 1 0.6246 -2.5563 0.8919 32 1 0.6239 -2.5575 -0.8881 33 1 1.5839 -4.7454 1.7459 34 1 3.5549 -6.3422 1.0739 35 1 5.3186 -5.0267 -2.0628 36 1 6.8189 -7.1413 -3.6139 37 1 6.6344 -5.5464 -2.8395 38 1 9.2259 -4.3790 -5.1289 39 1 10.2484 -7.7624 -2.2236 40 1 8.9001 -8.5021 -3.1196 41 1 8.8245 -10.0527 0.1024 42 1 6.6390 -8.7773 -0.1601 43 1 6.8198 -9.2436 -1.8696 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608183508.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:12 Heat of formation + Delta-G solvation = -103.320582 kcal Electronic energy + Delta-G solvation = -29152.902326 eV Core-core repulsion = 24813.397792 eV Total energy + Delta-G solvation = -4339.504535 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.46079 -41.81382 -41.03290 -39.19117 -37.19318 -36.97176 -36.47000 -35.54178 -33.94632 -32.65119 -31.24260 -30.90963 -28.26014 -26.81587 -25.99730 -25.05664 -23.41293 -22.61066 -22.02220 -21.35762 -20.54030 -19.44431 -19.18968 -19.09106 -18.44193 -18.14680 -17.43411 -17.31694 -17.06024 -16.60032 -16.30678 -15.98014 -15.82570 -15.58069 -15.21930 -14.98182 -14.95550 -14.57248 -14.34069 -14.04037 -13.87443 -13.72822 -13.67470 -13.50283 -13.20900 -12.60610 -12.58670 -12.50474 -12.34990 -12.04983 -11.94381 -11.85861 -11.73581 -11.63220 -11.29163 -11.12014 -10.99465 -10.67648 -9.98798 -9.77454 -9.14097 -8.75100 -6.53892 0.89477 0.98552 1.10379 1.52596 1.58830 1.59566 1.75616 1.81220 2.03530 2.29894 2.49978 2.68396 3.03174 3.06651 3.46333 3.62789 3.69451 3.78274 3.87310 4.05703 4.11955 4.21375 4.25745 4.45627 4.50382 4.56729 4.59703 4.69262 4.75235 4.80281 4.87023 4.93065 5.05421 5.10349 5.32470 5.50827 5.55986 5.63975 5.84505 5.95791 6.29156 6.42708 6.47318 6.80253 6.92425 7.00766 7.21963 7.25129 8.60515 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013750 B = 0.002621 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.879780 B =10681.119474 C =12269.033006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.019 4.019 3 Si 1.119 2.881 4 H -0.277 1.277 5 H -0.271 1.271 6 H -0.274 1.274 7 C -0.621 4.621 8 H 0.046 0.954 9 C 0.260 3.740 10 N -0.344 5.344 11 C 0.055 3.945 12 C -0.287 4.287 13 C 0.286 3.714 14 N -0.636 5.636 15 C 0.720 3.280 16 O -0.590 6.590 17 N -0.610 5.610 18 C 0.116 3.884 19 C -0.087 4.087 20 H 0.129 0.871 21 C 0.498 3.502 22 O -0.539 6.539 23 O -0.509 6.509 24 C -0.096 4.096 25 C 0.105 3.895 26 H 0.067 0.933 27 O -0.570 6.570 28 C 0.097 3.903 29 N -0.345 5.345 30 H 0.261 0.739 31 H 0.053 0.947 32 H 0.017 0.983 33 H 0.201 0.799 34 H 0.170 0.830 35 H 0.418 0.582 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.432 0.568 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.401 0.599 42 H 0.096 0.904 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.429 -16.589 -4.949 25.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.219 4.219 3 Si 0.940 3.060 4 H -0.202 1.202 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.659 4.659 8 H 0.065 0.935 9 C 0.141 3.859 10 N -0.126 5.126 11 C -0.093 4.093 12 C -0.318 4.318 13 C 0.030 3.970 14 N -0.290 5.290 15 C 0.421 3.579 16 O -0.467 6.467 17 N -0.348 5.348 18 C -0.007 4.007 19 C -0.107 4.107 20 H 0.147 0.853 21 C 0.340 3.660 22 O -0.429 6.429 23 O -0.323 6.323 24 C -0.134 4.134 25 C 0.045 3.955 26 H 0.085 0.915 27 O -0.378 6.378 28 C -0.026 4.026 29 N -0.176 5.176 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.034 0.966 33 H 0.218 0.782 34 H 0.188 0.812 35 H 0.259 0.741 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.295 0.705 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.252 0.748 42 H 0.115 0.885 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 18.159 -14.505 -5.404 23.861 hybrid contribution 0.098 -1.906 0.037 1.909 sum 18.257 -16.411 -5.367 25.128 Atomic orbital electron populations 1.70944 1.07498 1.30196 1.47428 1.27260 0.96421 1.06069 0.92111 0.82888 0.74144 0.71117 0.77846 1.20151 1.19661 1.19929 1.22298 0.94736 0.92103 1.56737 0.93532 1.19407 0.86413 0.82792 0.97332 1.48549 1.23985 1.20304 1.19779 1.23171 1.00637 0.88864 0.96595 1.21683 1.01903 1.06566 1.01695 1.19075 0.90774 0.92945 0.94210 1.41581 1.30286 1.25426 1.31677 1.15552 0.79972 0.79501 0.82877 1.90843 1.65882 1.65799 1.24149 1.47003 1.37108 1.22340 1.28363 1.21871 0.90740 1.00065 0.88073 1.21343 0.96041 0.98870 0.94471 0.85307 1.23012 0.78240 0.78895 0.85827 1.90757 1.34063 1.59818 1.58222 1.84513 1.67528 1.33592 1.46661 1.21287 1.01438 0.93337 0.97305 1.21893 0.90634 0.85871 0.97126 0.91497 1.86488 1.69525 1.32991 1.48780 1.22430 0.93862 0.82923 1.03343 1.77266 1.04750 1.17989 1.17577 0.92959 0.92890 0.96567 0.78231 0.81244 0.74147 0.88158 0.88066 0.70547 0.90220 0.90134 0.74813 0.88524 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.60 13.65 21.45 0.29 -53.30 16 2 C -0.02 -1.05 5.46 84.65 0.46 -0.59 16 3 Si 1.12 48.97 29.90 68.60 2.05 51.03 16 4 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 6 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.62 -34.84 9.24 25.60 0.24 -34.60 16 8 H 0.05 2.73 7.81 -2.91 -0.02 2.70 16 9 C 0.26 13.18 5.57 85.64 0.48 13.65 16 10 N -0.34 -15.86 3.67 -351.85 -1.29 -17.15 16 11 C 0.06 2.12 11.43 83.52 0.96 3.08 16 12 C -0.29 -10.83 9.61 22.11 0.21 -10.62 16 13 C 0.29 10.99 8.11 133.31 1.08 12.07 16 14 N -0.64 -18.19 5.36 -321.22 -1.72 -19.91 16 15 C 0.72 18.74 8.26 179.05 1.48 20.22 16 16 O -0.59 -18.93 12.91 -3.99 -0.05 -18.98 16 17 N -0.61 -10.37 2.97 -836.06 -2.48 -12.85 16 18 C 0.12 1.40 5.64 86.51 0.49 1.88 16 19 C -0.09 -1.00 2.79 -11.32 -0.03 -1.03 16 20 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 21 C 0.50 6.70 7.62 71.23 0.54 7.24 16 22 O -0.54 -10.67 16.74 21.95 0.37 -10.30 16 23 O -0.51 -4.99 13.36 -51.43 -0.69 -5.68 16 24 C -0.10 -1.23 4.11 30.62 0.13 -1.11 16 25 C 0.10 1.27 3.62 30.67 0.11 1.38 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 O -0.57 -6.91 13.32 -148.98 -1.98 -8.90 16 28 C 0.10 1.34 6.06 86.36 0.52 1.86 16 29 N -0.35 -15.66 12.42 -54.43 -0.68 -16.34 16 30 H 0.26 14.94 7.22 -92.71 -0.67 14.27 16 31 H 0.05 2.58 7.94 -2.39 -0.02 2.56 16 32 H 0.02 0.88 8.01 -2.38 -0.02 0.86 16 33 H 0.20 6.00 8.06 -2.91 -0.02 5.98 16 34 H 0.17 6.13 5.93 -2.91 -0.02 6.12 16 35 H 0.42 9.69 6.31 -92.71 -0.58 9.10 16 36 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.10 1.17 5.64 -2.39 -0.01 1.15 16 38 H 0.43 0.97 9.10 -74.06 -0.67 0.30 16 39 H 0.08 1.17 8.07 -2.39 -0.02 1.15 16 40 H 0.08 1.13 8.13 -2.39 -0.02 1.11 16 41 H 0.40 1.77 9.08 -74.06 -0.67 1.10 16 42 H 0.10 1.53 6.99 -2.39 -0.02 1.51 16 43 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -78.99 364.00 -0.25 -79.24 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -0.73 Total: 19.71 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: 6.66 Total: 13.44 kcal Atomic # 7 Polarization: -113.68 SS G_CDS: -5.88 Total: -119.55 kcal Atomic # 8 Polarization: -41.50 SS G_CDS: -2.36 Total: -43.86 kcal Atomic # 14 Polarization: 48.97 SS G_CDS: 2.05 Total: 51.03 kcal Total: -78.99 -0.25 -79.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183508.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.085 kcal (2) G-P(sol) polarization free energy of solvation -78.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds