Wall clock time and date at job start Tue Mar 31 2020 20:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00053 * 2 1 4 4 H 1.48499 * 109.47444 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46967 * 300.00362 * 3 2 1 6 6 H 1.48500 * 109.46816 * 60.00159 * 3 2 1 7 7 C 1.37879 * 120.00390 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00489 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99527 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.46852 * 179.97438 * 9 7 2 11 11 C 1.34964 * 125.97274 * 125.00277 * 10 9 7 12 12 C 1.35239 * 107.86251 * 179.97438 * 11 10 9 13 13 C 1.40410 * 107.86299 * 359.97438 * 12 11 10 14 14 N 1.40192 * 125.96987 * 180.02562 * 13 12 11 15 15 C 1.34780 * 120.00506 * 0.02562 * 14 13 12 16 16 O 1.21595 * 119.99525 * 0.02562 * 15 14 13 17 17 N 1.34772 * 120.00534 * 179.97438 * 15 14 13 18 18 C 1.46494 * 120.00391 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.47491 * 180.02562 * 18 17 15 20 20 H 1.09004 * 110.45028 * 307.60306 * 19 18 17 21 21 C 1.54509 * 110.51400 * 70.35441 * 19 18 17 22 22 C 1.54479 * 104.06315 * 118.64658 * 21 19 18 23 23 O 1.44427 * 104.80368 * 336.02268 * 22 21 19 24 24 C 1.44429 * 105.27463 * 40.50963 * 23 22 21 25 25 H 1.09002 * 110.37277 * 78.32201 * 24 23 22 26 26 C 1.50695 * 110.46683 * 200.60864 * 24 23 22 27 27 O 1.20825 * 119.99806 * 0.43828 * 26 24 23 28 28 O 1.34224 * 120.00426 * 180.43800 * 26 24 23 29 29 N 1.31209 * 108.05655 * 0.02562 * 13 12 11 30 30 H 0.96999 * 120.00330 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.46818 * 60.00515 * 9 7 2 32 32 H 1.08993 * 109.47686 * 300.00775 * 9 7 2 33 33 H 1.08004 * 126.07208 * 359.72162 * 11 10 9 34 34 H 1.07999 * 126.07050 * 179.97438 * 12 11 10 35 35 H 0.97005 * 120.00069 * 179.97438 * 14 13 12 36 36 H 0.97000 * 119.99533 * 359.97438 * 17 15 14 37 37 H 1.09004 * 109.47090 * 299.99802 * 18 17 15 38 38 H 1.09001 * 109.46988 * 59.99692 * 18 17 15 39 39 H 1.08999 * 110.50980 * 237.29350 * 21 19 18 40 40 H 1.08999 * 110.51197 * 359.97438 * 21 19 18 41 41 H 1.08997 * 110.36822 * 217.19013 * 22 21 19 42 42 H 1.09005 * 110.36825 * 94.85037 * 22 21 19 43 43 H 0.96694 * 117.00697 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 2.2428 -4.6227 0.8924 12 6 3.2608 -5.4431 0.5466 13 6 3.8675 -4.9151 -0.6043 14 7 4.9623 -5.4664 -1.2846 15 6 5.5266 -6.6072 -0.8410 16 8 5.0859 -7.1584 0.1491 17 7 6.5788 -7.1374 -1.4954 18 6 7.1918 -8.3776 -1.0135 19 6 8.3575 -8.7593 -1.9280 20 1 8.0342 -8.7795 -2.9688 21 6 9.5353 -7.7766 -1.7428 22 6 10.6927 -8.6682 -1.2411 23 8 10.0448 -9.8099 -0.6390 24 6 8.9426 -10.1284 -1.5163 25 1 9.2996 -10.6678 -2.3937 26 6 7.9066 -10.9437 -0.7863 27 8 8.0713 -11.2287 0.3762 28 8 6.8007 -11.3532 -1.4275 29 7 3.2308 -3.8156 -0.9317 30 1 -0.4850 0.8400 0.0004 31 1 0.6242 -2.5566 -0.8904 32 1 0.6247 -2.5571 0.8895 33 1 1.5818 -4.7508 1.7369 34 1 3.5549 -6.3445 1.0638 35 1 5.3133 -5.0273 -2.0752 36 1 6.9297 -6.6982 -2.2859 37 1 7.5603 -8.2302 0.0018 38 1 6.4493 -9.1756 -1.0183 39 1 9.7965 -7.3102 -2.6927 40 1 9.2870 -7.0185 -1.0000 41 1 11.2883 -8.1353 -0.4999 42 1 11.3181 -8.9836 -2.0763 43 1 6.1651 -11.8739 -0.9177 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608183846.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:25 Heat of formation + Delta-G solvation = -70.784259 kcal Electronic energy + Delta-G solvation = -28561.569187 eV Core-core repulsion = 24223.475533 eV Total energy + Delta-G solvation = -4338.093654 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.40631 -40.68134 -39.67122 -39.27152 -36.54359 -35.66137 -34.65365 -33.39091 -32.53084 -30.91358 -30.67135 -29.28627 -27.16651 -26.28911 -24.31536 -23.10698 -22.26038 -21.73793 -21.07918 -20.41113 -19.82001 -18.48755 -18.04240 -17.66108 -17.25259 -16.66133 -16.56301 -16.34990 -15.65863 -15.63060 -15.38593 -15.10190 -14.72231 -14.57997 -14.20540 -14.10548 -13.76970 -13.57350 -13.16556 -12.78921 -12.40163 -12.34935 -12.23310 -12.13337 -11.89670 -11.82896 -11.67124 -11.46510 -11.05486 -10.91600 -10.88209 -10.46805 -10.41742 -10.26444 -10.10212 -9.70135 -9.49024 -9.31684 -8.63695 -8.10114 -7.41471 -6.24256 -4.29130 1.71527 2.13871 2.28630 2.65591 3.10209 3.21950 3.29434 3.34882 3.38242 3.55599 3.82383 3.85704 3.96952 4.17076 4.29052 4.37971 4.47081 4.48022 4.68371 4.77198 4.83357 5.10906 5.11293 5.14728 5.33753 5.40869 5.48847 5.57215 5.80632 6.01327 6.07660 6.12477 6.25375 6.53542 6.55787 6.87199 6.99785 7.09882 7.44673 7.49007 7.69841 7.81537 7.96033 8.07146 8.55174 8.66466 8.81386 9.36456 10.84480 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022245 B = 0.002007 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.394198 B =13945.216911 C =14791.532124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.069 0.931 9 C 0.258 3.742 10 N -0.321 5.321 11 C 0.051 3.949 12 C -0.286 4.286 13 C 0.275 3.725 14 N -0.642 5.642 15 C 0.713 3.287 16 O -0.565 6.565 17 N -0.742 5.742 18 C 0.139 3.861 19 C -0.122 4.122 20 H 0.110 0.890 21 C -0.155 4.155 22 C 0.044 3.956 23 O -0.344 6.344 24 C 0.094 3.906 25 H 0.116 0.884 26 C 0.482 3.518 27 O -0.487 6.487 28 O -0.512 6.512 29 N -0.307 5.307 30 H 0.266 0.734 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.168 0.832 34 H 0.160 0.840 35 H 0.407 0.593 36 H 0.397 0.603 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.069 0.931 43 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.933 -20.323 -7.754 28.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.087 0.913 9 C 0.141 3.859 10 N -0.102 5.102 11 C -0.099 4.099 12 C -0.318 4.318 13 C 0.021 3.979 14 N -0.292 5.292 15 C 0.412 3.588 16 O -0.440 6.440 17 N -0.399 5.399 18 C 0.015 3.985 19 C -0.142 4.142 20 H 0.128 0.872 21 C -0.193 4.193 22 C -0.032 4.032 23 O -0.262 6.262 24 C 0.034 3.966 25 H 0.133 0.867 26 C 0.322 3.678 27 O -0.372 6.372 28 O -0.326 6.326 29 N -0.138 5.138 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.185 0.815 34 H 0.178 0.822 35 H 0.241 0.759 36 H 0.231 0.769 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.121 0.879 42 H 0.087 0.913 43 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 18.599 -19.618 -7.327 28.008 hybrid contribution 0.284 0.528 -0.079 0.604 sum 18.883 -19.090 -7.405 27.854 Atomic orbital electron populations 1.69925 1.06036 1.27503 1.49911 1.24952 0.94985 0.99559 0.94660 0.86277 0.80046 0.82493 0.77707 1.19585 1.20716 1.20764 1.21298 0.94023 0.89380 1.51822 0.91266 1.19739 0.85623 0.81312 0.99255 1.49055 1.23302 1.19720 1.18168 1.22558 1.00328 0.90221 0.96775 1.21511 1.02021 1.06475 1.01743 1.18775 0.90718 0.94096 0.94339 1.41341 1.31636 1.24946 1.31296 1.15586 0.80001 0.80240 0.82956 1.90890 1.64239 1.62301 1.26527 1.44865 1.34277 1.27871 1.32869 1.21389 0.93430 0.86165 0.97550 1.22775 0.96198 0.93219 1.01962 0.87225 1.23149 0.93903 0.98697 1.03525 1.23569 0.95039 0.85851 0.98766 1.89293 1.41656 1.48820 1.46471 1.22312 0.86713 0.94770 0.92764 0.86679 1.22707 0.81585 0.77838 0.85705 1.90793 1.76556 1.52508 1.17359 1.84466 1.31603 1.67902 1.48602 1.77315 1.03903 1.16233 1.16375 0.92390 0.93755 0.92525 0.81512 0.82222 0.75886 0.76864 0.90660 0.90580 0.89215 0.89268 0.87908 0.91303 0.72092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.32 13.29 55.43 0.74 -24.58 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.91 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.53 -14.65 9.24 -34.44 -0.32 -14.97 16 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 9 C 0.26 6.57 6.26 -5.19 -0.03 6.54 16 10 N -0.32 -7.49 3.67 -62.56 -0.23 -7.72 16 11 C 0.05 1.04 11.44 -17.24 -0.20 0.84 16 12 C -0.29 -5.78 9.61 -39.83 -0.38 -6.17 16 13 C 0.27 5.53 8.11 -154.36 -1.25 4.28 16 14 N -0.64 -9.77 5.45 -15.50 -0.08 -9.85 16 15 C 0.71 10.30 8.53 -86.92 -0.74 9.56 16 16 O -0.56 -10.33 13.47 5.28 0.07 -10.26 16 17 N -0.74 -6.85 5.45 -65.23 -0.36 -7.20 16 18 C 0.14 1.24 4.10 -4.05 -0.02 1.22 16 19 C -0.12 -0.63 3.05 -89.05 -0.27 -0.90 16 20 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 21 C -0.16 -0.64 6.59 -25.16 -0.17 -0.80 16 22 C 0.04 0.21 7.63 37.93 0.29 0.50 16 23 O -0.34 -2.97 10.92 -54.44 -0.59 -3.56 16 24 C 0.09 0.61 3.74 -27.11 -0.10 0.51 16 25 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 26 C 0.48 4.23 5.90 36.00 0.21 4.45 16 27 O -0.49 -6.33 17.31 -25.27 -0.44 -6.76 16 28 O -0.51 -3.16 12.31 -39.24 -0.48 -3.65 16 29 N -0.31 -7.06 12.42 31.44 0.39 -6.67 16 30 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.04 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 33 H 0.17 2.77 8.06 -52.48 -0.42 2.34 16 34 H 0.16 3.20 5.91 -52.49 -0.31 2.89 16 35 H 0.41 4.85 8.84 -40.82 -0.36 4.49 16 36 H 0.40 2.31 8.46 -40.82 -0.35 1.97 16 37 H 0.08 0.86 8.11 -51.93 -0.42 0.43 16 38 H 0.08 0.76 5.91 -51.93 -0.31 0.46 16 39 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.09 0.49 7.72 -51.93 -0.40 0.08 16 41 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 43 H 0.42 1.23 9.10 45.56 0.41 1.64 16 LS Contribution 369.95 15.07 5.58 5.58 Total: -1.00 -37.94 369.95 -8.16 -46.10 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -4.65 Total: 5.66 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: -3.08 Total: 6.64 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: 0.46 Total: -56.03 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -1.44 Total: -24.23 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.94 -8.16 -46.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183846.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.687 kcal (2) G-P(sol) polarization free energy of solvation -37.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds