Wall clock time and date at job start Tue Mar 31 2020 20:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00053 * 2 1 4 4 H 1.48499 * 109.47444 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46967 * 300.00362 * 3 2 1 6 6 H 1.48500 * 109.46816 * 60.00159 * 3 2 1 7 7 C 1.37879 * 120.00390 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00489 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99527 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.46852 * 179.97438 * 9 7 2 11 11 C 1.34964 * 125.97274 * 125.00277 * 10 9 7 12 12 C 1.35239 * 107.86251 * 179.97438 * 11 10 9 13 13 C 1.40410 * 107.86299 * 359.97438 * 12 11 10 14 14 N 1.40192 * 125.96987 * 180.02562 * 13 12 11 15 15 C 1.34780 * 120.00506 * 0.02562 * 14 13 12 16 16 O 1.21595 * 119.99525 * 0.02562 * 15 14 13 17 17 N 1.34772 * 120.00534 * 179.97438 * 15 14 13 18 18 C 1.46494 * 120.00391 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.47491 * 180.02562 * 18 17 15 20 20 H 1.09004 * 110.45028 * 307.60306 * 19 18 17 21 21 C 1.54509 * 110.51400 * 70.35441 * 19 18 17 22 22 C 1.54479 * 104.06315 * 118.64658 * 21 19 18 23 23 O 1.44427 * 104.80368 * 336.02268 * 22 21 19 24 24 C 1.44429 * 105.27463 * 40.50963 * 23 22 21 25 25 H 1.09002 * 110.37277 * 78.32201 * 24 23 22 26 26 C 1.50695 * 110.46683 * 200.60864 * 24 23 22 27 27 O 1.20825 * 119.99806 * 0.43828 * 26 24 23 28 28 O 1.34224 * 120.00426 * 180.43800 * 26 24 23 29 29 N 1.31209 * 108.05655 * 0.02562 * 13 12 11 30 30 H 0.96999 * 120.00330 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.46818 * 60.00515 * 9 7 2 32 32 H 1.08993 * 109.47686 * 300.00775 * 9 7 2 33 33 H 1.08004 * 126.07208 * 359.72162 * 11 10 9 34 34 H 1.07999 * 126.07050 * 179.97438 * 12 11 10 35 35 H 0.97005 * 120.00069 * 179.97438 * 14 13 12 36 36 H 0.97000 * 119.99533 * 359.97438 * 17 15 14 37 37 H 1.09004 * 109.47090 * 299.99802 * 18 17 15 38 38 H 1.09001 * 109.46988 * 59.99692 * 18 17 15 39 39 H 1.08999 * 110.50980 * 237.29350 * 21 19 18 40 40 H 1.08999 * 110.51197 * 359.97438 * 21 19 18 41 41 H 1.08997 * 110.36822 * 217.19013 * 22 21 19 42 42 H 1.09005 * 110.36825 * 94.85037 * 22 21 19 43 43 H 0.96694 * 117.00697 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 2.2428 -4.6227 0.8924 12 6 3.2608 -5.4431 0.5466 13 6 3.8675 -4.9151 -0.6043 14 7 4.9623 -5.4664 -1.2846 15 6 5.5266 -6.6072 -0.8410 16 8 5.0859 -7.1584 0.1491 17 7 6.5788 -7.1374 -1.4954 18 6 7.1918 -8.3776 -1.0135 19 6 8.3575 -8.7593 -1.9280 20 1 8.0342 -8.7795 -2.9688 21 6 9.5353 -7.7766 -1.7428 22 6 10.6927 -8.6682 -1.2411 23 8 10.0448 -9.8099 -0.6390 24 6 8.9426 -10.1284 -1.5163 25 1 9.2996 -10.6678 -2.3937 26 6 7.9066 -10.9437 -0.7863 27 8 8.0713 -11.2287 0.3762 28 8 6.8007 -11.3532 -1.4275 29 7 3.2308 -3.8156 -0.9317 30 1 -0.4850 0.8400 0.0004 31 1 0.6242 -2.5566 -0.8904 32 1 0.6247 -2.5571 0.8895 33 1 1.5818 -4.7508 1.7369 34 1 3.5549 -6.3445 1.0638 35 1 5.3133 -5.0273 -2.0752 36 1 6.9297 -6.6982 -2.2859 37 1 7.5603 -8.2302 0.0018 38 1 6.4493 -9.1756 -1.0183 39 1 9.7965 -7.3102 -2.6927 40 1 9.2870 -7.0185 -1.0000 41 1 11.2883 -8.1353 -0.4999 42 1 11.3181 -8.9836 -2.0763 43 1 6.1651 -11.8739 -0.9177 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608183846.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:25 Heat of formation + Delta-G solvation = -100.334198 kcal Electronic energy + Delta-G solvation = -28562.850568 eV Core-core repulsion = 24223.475533 eV Total energy + Delta-G solvation = -4339.375035 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.27308 -41.92725 -40.85934 -39.93391 -37.22997 -36.60461 -36.05182 -35.27609 -33.41531 -32.45690 -31.19864 -30.92945 -28.68962 -27.44710 -25.09014 -24.70499 -23.13266 -22.63688 -21.96903 -21.71470 -21.15835 -19.36652 -18.96794 -18.69144 -18.40265 -17.99515 -17.83308 -17.10087 -17.04386 -16.52944 -16.29694 -16.06398 -15.86026 -15.69753 -15.56552 -15.32159 -14.79107 -14.47595 -14.25000 -14.12747 -13.85718 -13.80375 -13.63365 -12.93680 -12.87153 -12.73287 -12.62479 -12.47955 -12.31065 -12.23223 -12.05879 -11.91505 -11.65567 -11.50780 -11.39483 -11.17960 -10.87838 -10.71893 -10.29657 -9.72957 -9.06120 -8.32293 -6.46374 1.04715 1.06865 1.10163 1.37979 1.39221 1.52406 1.66240 1.69256 2.07506 2.36263 2.39082 2.92933 2.99322 3.10829 3.43026 3.51382 3.78370 3.97296 4.10912 4.12953 4.20688 4.27605 4.31239 4.41975 4.59136 4.74637 4.80458 4.87067 4.90380 4.93709 4.95928 5.03103 5.11186 5.14609 5.36219 5.51369 5.57589 5.68604 5.76320 5.87357 5.96897 6.29079 6.64094 6.75530 6.88758 7.14371 7.23601 7.40154 8.75429 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022245 B = 0.002007 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.394198 B =13945.216911 C =14791.532124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.017 3.983 3 Si 0.973 3.027 4 H -0.274 1.274 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.545 4.545 8 H 0.052 0.948 9 C 0.272 3.728 10 N -0.345 5.345 11 C 0.056 3.944 12 C -0.294 4.294 13 C 0.284 3.716 14 N -0.632 5.632 15 C 0.710 3.290 16 O -0.605 6.605 17 N -0.712 5.712 18 C 0.139 3.861 19 C -0.110 4.110 20 H 0.147 0.853 21 C -0.150 4.150 22 C 0.038 3.962 23 O -0.382 6.382 24 C 0.092 3.908 25 H 0.154 0.846 26 C 0.481 3.519 27 O -0.541 6.541 28 O -0.503 6.503 29 N -0.344 5.344 30 H 0.272 0.728 31 H 0.022 0.978 32 H 0.058 0.942 33 H 0.200 0.800 34 H 0.164 0.836 35 H 0.423 0.577 36 H 0.419 0.581 37 H 0.045 0.955 38 H 0.065 0.935 39 H 0.124 0.876 40 H 0.071 0.929 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.641 -20.208 -9.636 30.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.797 3.203 4 H -0.199 1.199 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.584 4.584 8 H 0.071 0.929 9 C 0.154 3.846 10 N -0.127 5.127 11 C -0.092 4.092 12 C -0.326 4.326 13 C 0.029 3.971 14 N -0.285 5.285 15 C 0.410 3.590 16 O -0.483 6.483 17 N -0.370 5.370 18 C 0.015 3.985 19 C -0.129 4.129 20 H 0.164 0.836 21 C -0.187 4.187 22 C -0.037 4.037 23 O -0.302 6.302 24 C 0.032 3.968 25 H 0.171 0.829 26 C 0.324 3.676 27 O -0.431 6.431 28 O -0.317 6.317 29 N -0.175 5.175 30 H 0.081 0.919 31 H 0.040 0.960 32 H 0.076 0.924 33 H 0.217 0.783 34 H 0.181 0.819 35 H 0.261 0.739 36 H 0.257 0.743 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.142 0.858 40 H 0.090 0.910 41 H 0.118 0.882 42 H 0.114 0.886 43 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 20.342 -19.520 -9.281 29.681 hybrid contribution -0.208 0.341 0.503 0.642 sum 20.134 -19.179 -8.778 29.160 Atomic orbital electron populations 1.70000 1.07219 1.28700 1.50068 1.25752 0.95853 1.02763 0.93936 0.85286 0.78412 0.78340 0.78278 1.19855 1.19780 1.19630 1.21423 0.93373 0.90933 1.52635 0.92939 1.19342 0.85677 0.81504 0.98117 1.48825 1.23985 1.20285 1.19613 1.23134 1.00451 0.88901 0.96746 1.21666 1.02224 1.06616 1.02052 1.19067 0.90961 0.93004 0.94094 1.41298 1.30450 1.25168 1.31544 1.15799 0.80706 0.79776 0.82754 1.90862 1.65673 1.63264 1.28459 1.44621 1.32205 1.27540 1.32654 1.21422 0.94507 0.85272 0.97313 1.22804 0.94793 0.92715 1.02622 0.83565 1.23166 0.92979 0.97888 1.04690 1.23792 0.95377 0.85069 0.99499 1.89268 1.42530 1.50232 1.48159 1.22650 0.85817 0.95238 0.93053 0.82908 1.23382 0.82054 0.77047 0.85164 1.90770 1.77757 1.54822 1.19726 1.84446 1.31249 1.67686 1.48369 1.77237 1.04916 1.17926 1.17444 0.91852 0.95975 0.92435 0.78338 0.81912 0.73937 0.74301 0.93699 0.91683 0.85812 0.90987 0.88246 0.88609 0.70679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.15 13.29 21.45 0.28 -51.86 16 2 C 0.02 0.95 5.46 84.66 0.46 1.41 16 3 Si 0.97 43.45 29.54 68.60 2.03 45.48 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 7 C -0.55 -30.78 9.24 25.60 0.24 -30.54 16 8 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 9 C 0.27 14.18 6.26 85.63 0.54 14.72 16 10 N -0.35 -16.34 3.67 -351.85 -1.29 -17.63 16 11 C 0.06 2.27 11.44 83.52 0.96 3.22 16 12 C -0.29 -11.85 9.61 22.11 0.21 -11.64 16 13 C 0.28 11.39 8.11 133.32 1.08 12.47 16 14 N -0.63 -18.53 5.45 -321.22 -1.75 -20.28 16 15 C 0.71 19.80 8.53 179.05 1.53 21.33 16 16 O -0.60 -22.12 13.47 -4.01 -0.05 -22.17 16 17 N -0.71 -11.72 5.45 -478.54 -2.61 -14.33 16 18 C 0.14 2.31 4.10 86.38 0.35 2.66 16 19 C -0.11 -0.80 3.05 -9.78 -0.03 -0.83 16 20 H 0.15 0.08 8.14 -2.38 -0.02 0.06 16 21 C -0.15 -0.76 6.59 31.61 0.21 -0.55 16 22 C 0.04 0.28 7.63 72.48 0.55 0.83 16 23 O -0.38 -6.22 10.92 -130.61 -1.43 -7.65 16 24 C 0.09 0.99 3.74 30.35 0.11 1.10 16 25 H 0.15 0.50 8.14 -2.39 -0.02 0.48 16 26 C 0.48 8.23 5.90 71.23 0.42 8.65 16 27 O -0.54 -14.69 17.31 28.20 0.49 -14.21 16 28 O -0.50 -5.66 12.31 -51.35 -0.63 -6.29 16 29 N -0.34 -15.95 12.42 -54.43 -0.68 -16.62 16 30 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 31 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 2.93 8.07 -2.39 -0.02 2.91 16 33 H 0.20 6.39 8.06 -2.91 -0.02 6.37 16 34 H 0.16 6.52 5.91 -2.91 -0.02 6.50 16 35 H 0.42 9.33 8.84 -92.70 -0.82 8.51 16 36 H 0.42 3.43 8.46 -92.71 -0.78 2.65 16 37 H 0.04 1.04 8.11 -2.38 -0.02 1.03 16 38 H 0.07 1.26 5.91 -2.39 -0.01 1.24 16 39 H 0.12 -0.16 8.14 -2.39 -0.02 -0.18 16 40 H 0.07 0.65 7.72 -2.39 -0.02 0.63 16 41 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.10 0.19 8.14 -2.38 -0.02 0.17 16 43 H 0.43 2.34 9.10 -74.06 -0.67 1.67 16 Total: -1.00 -85.35 369.95 -0.19 -85.54 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -1.18 Total: 17.20 kcal Atomic # 6 Polarization: 16.19 SS G_CDS: 6.63 Total: 22.82 kcal Atomic # 7 Polarization: -114.69 SS G_CDS: -6.04 Total: -120.73 kcal Atomic # 8 Polarization: -48.69 SS G_CDS: -1.62 Total: -50.31 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -85.35 -0.19 -85.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183846.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.793 kcal (2) G-P(sol) polarization free energy of solvation -85.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds