Wall clock time and date at job start Tue Mar 31 2020 21:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35222 * 126.06126 * 2 1 4 4 C 1.40458 * 107.86588 * 180.14671 * 3 2 1 5 5 N 1.39934 * 125.97962 * 179.86153 * 4 3 2 6 6 C 1.34769 * 119.99876 * 359.72455 * 5 4 3 7 7 O 1.21393 * 120.00259 * 359.97438 * 6 5 4 8 8 C 1.49346 * 120.00168 * 179.97438 * 6 5 4 9 9 O 1.21363 * 119.99554 * 359.97438 * 8 6 5 10 10 N 1.34777 * 119.99974 * 180.27495 * 8 6 5 11 11 C 1.46505 * 119.99725 * 179.72256 * 10 8 6 12 12 H 1.09002 * 109.47222 * 324.99988 * 11 10 8 13 13 C 1.53005 * 109.47006 * 84.99705 * 11 10 8 14 14 C 1.52994 * 109.47138 * 204.99517 * 11 10 8 15 15 C 1.50702 * 109.46814 * 64.99878 * 14 11 10 16 16 O 1.20819 * 120.00204 * 0.02562 * 15 14 11 17 17 O 1.34231 * 119.99861 * 179.97438 * 15 14 11 18 18 N 1.31271 * 108.04192 * 359.60636 * 4 3 2 19 19 N 1.34991 * 126.06362 * 179.71525 * 2 1 3 20 20 C 1.46495 * 125.96767 * 359.96829 * 19 2 1 21 21 C 1.50701 * 109.47300 * 270.00109 * 20 19 2 22 22 H 1.07996 * 120.00012 * 0.02562 * 21 20 19 23 23 C 1.37885 * 119.99892 * 180.02562 * 21 20 19 24 24 N 1.31516 * 119.99608 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99874 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47153 * 90.00172 * 25 23 21 27 27 H 1.48498 * 109.46869 * 210.00074 * 25 23 21 28 28 H 1.48504 * 109.47030 * 329.99780 * 25 23 21 29 29 H 1.08997 * 109.46908 * 270.28961 * 1 2 3 30 30 H 1.09000 * 109.47501 * 30.28565 * 1 2 3 31 31 H 1.08999 * 109.47067 * 150.28909 * 1 2 3 32 32 H 1.07994 * 126.06620 * 0.02562 * 3 2 1 33 33 H 0.97001 * 119.99771 * 179.71386 * 5 4 3 34 34 H 0.97001 * 120.00485 * 359.71515 * 10 8 6 35 35 H 1.08994 * 109.47191 * 60.00066 * 13 11 10 36 36 H 1.09003 * 109.46937 * 180.02562 * 13 11 10 37 37 H 1.08998 * 109.47131 * 299.99980 * 13 11 10 38 38 H 1.09000 * 109.47152 * 184.99949 * 14 11 10 39 39 H 1.09001 * 109.47542 * 305.00310 * 14 11 10 40 40 H 0.96700 * 117.00123 * 180.02562 * 17 15 14 41 41 H 1.09000 * 109.47439 * 30.00900 * 20 19 2 42 42 H 1.09008 * 109.46594 * 150.00573 * 20 19 2 43 43 H 0.96999 * 119.99054 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3030 1.0931 0.0000 4 6 3.6373 0.6545 -0.0034 5 7 4.7719 1.4736 -0.0073 6 6 4.6351 2.8143 -0.0136 7 8 3.5276 3.3114 -0.0163 8 6 5.8460 3.6885 -0.0171 9 8 6.9531 3.1915 -0.0138 10 7 5.7091 5.0293 -0.0178 11 6 6.8969 5.8868 -0.0151 12 1 7.6829 5.4171 0.5764 13 6 7.3876 6.0830 -1.4510 14 6 6.5437 7.2455 0.5932 15 6 6.1780 7.0664 2.0441 16 8 6.1982 5.9652 2.5408 17 8 5.8307 8.1305 2.7850 18 7 3.6338 -0.6582 0.0032 19 7 2.3017 -1.0912 0.0054 20 6 1.8497 -2.4847 0.0130 21 6 1.6954 -2.9550 1.4364 22 1 1.9118 -2.2830 2.2536 23 6 1.2778 -4.2434 1.6953 24 7 1.0147 -5.0618 0.7000 25 14 1.0857 -4.8261 3.4596 26 1 -0.2972 -4.5494 3.9246 27 1 1.3488 -6.2859 3.5301 28 1 2.0530 -4.1064 4.3267 29 1 -0.3633 0.0052 1.0276 30 1 -0.3634 0.8874 -0.5182 31 1 -0.3633 -0.8926 -0.5093 32 1 1.9716 2.1209 0.0004 33 1 5.6568 1.0763 -0.0053 34 1 4.8242 5.4266 -0.0201 35 1 6.6018 6.5526 -2.0425 36 1 8.2717 6.7206 -1.4490 37 1 7.6392 5.1150 -1.8844 38 1 7.4019 7.9130 0.5145 39 1 5.6985 7.6755 0.0559 40 1 5.6047 7.9660 3.7107 41 1 0.8909 -2.5585 -0.5001 42 1 2.5842 -3.1075 -0.4978 43 1 0.7213 -5.9682 0.8822 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001611150494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:54 Heat of formation + Delta-G solvation = -83.515903 kcal Electronic energy + Delta-G solvation = -28572.532965 eV Core-core repulsion = 24233.887225 eV Total energy + Delta-G solvation = -4338.645739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.20172 -40.75486 -40.13096 -38.59968 -36.90414 -36.11748 -34.98418 -33.38941 -32.12470 -31.49589 -30.88824 -28.99378 -27.05699 -26.42285 -25.42931 -23.34565 -22.70396 -21.38073 -20.90095 -19.88966 -19.61815 -18.48547 -17.96930 -17.24179 -17.02955 -16.71182 -16.41348 -16.00669 -15.92815 -15.53443 -15.22898 -14.60480 -14.32411 -14.18507 -14.16061 -13.86187 -13.30741 -13.12256 -13.03441 -12.87226 -12.50733 -12.47991 -12.34995 -12.23618 -11.92227 -11.89276 -11.61643 -11.43554 -11.39691 -11.08930 -10.99572 -10.82317 -10.52808 -10.25269 -9.95352 -9.59244 -9.56579 -9.53304 -8.64850 -8.01393 -7.54746 -6.26462 -4.33889 1.25189 1.77229 2.06063 2.51922 2.66938 3.06364 3.17451 3.21486 3.28107 3.34712 3.68849 3.83815 3.94206 4.29345 4.40252 4.44670 4.55915 4.85667 4.91445 4.98069 5.07635 5.20798 5.34497 5.46279 5.64688 5.74055 5.85667 5.95102 6.07342 6.08329 6.12139 6.34802 6.38860 6.56393 6.87655 6.91577 7.03154 7.31299 7.42599 7.44929 7.66042 7.68659 7.87166 7.97717 8.00568 8.57597 8.73179 9.32492 10.81022 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018413 B = 0.002181 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.330749 B =12833.366167 C =13198.065850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.093 3.907 3 C -0.288 4.288 4 C 0.258 3.742 5 N -0.599 5.599 6 C 0.513 3.487 7 O -0.500 6.500 8 C 0.525 3.475 9 O -0.514 6.514 10 N -0.693 5.693 11 C 0.151 3.849 12 H 0.104 0.896 13 C -0.165 4.165 14 C -0.124 4.124 15 C 0.470 3.530 16 O -0.498 6.498 17 O -0.520 6.520 18 N -0.311 5.311 19 N -0.313 5.313 20 C 0.257 3.743 21 C -0.536 4.536 22 H 0.065 0.935 23 C 0.066 3.934 24 N -0.891 5.891 25 Si 0.907 3.093 26 H -0.277 1.277 27 H -0.283 1.283 28 H -0.272 1.272 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.160 0.840 33 H 0.423 0.577 34 H 0.411 0.589 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.126 0.874 39 H 0.115 0.885 40 H 0.413 0.587 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.508 27.349 -2.935 28.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.039 4.039 3 C -0.319 4.319 4 C 0.005 3.995 5 N -0.247 5.247 6 C 0.293 3.707 7 O -0.373 6.373 8 C 0.305 3.695 9 O -0.389 6.389 10 N -0.347 5.347 11 C 0.047 3.953 12 H 0.122 0.878 13 C -0.223 4.223 14 C -0.162 4.162 15 C 0.311 3.689 16 O -0.385 6.385 17 O -0.333 6.333 18 N -0.141 5.141 19 N -0.095 5.095 20 C 0.140 3.860 21 C -0.575 4.575 22 H 0.083 0.917 23 C -0.138 4.138 24 N -0.529 5.529 25 Si 0.734 3.266 26 H -0.203 1.203 27 H -0.209 1.209 28 H -0.197 1.197 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.178 0.822 33 H 0.260 0.740 34 H 0.247 0.753 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.144 0.856 39 H 0.134 0.866 40 H 0.272 0.728 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.275 25.745 -3.253 27.557 hybrid contribution -0.647 0.086 1.660 1.784 sum 8.628 25.831 -1.593 27.281 Atomic orbital electron populations 1.20342 0.87692 1.02920 1.03268 1.21081 0.95003 0.87067 1.00748 1.21228 0.89515 0.99870 1.21306 1.18894 0.86790 0.89687 1.04082 1.41996 1.08773 1.04364 1.69558 1.19919 0.89559 0.82580 0.78627 1.90703 1.25961 1.73928 1.46678 1.19768 0.88988 0.83348 0.77351 1.90777 1.26324 1.74226 1.47529 1.45610 1.10477 1.05100 1.73485 1.20900 0.88678 0.88098 0.97657 0.87806 1.22204 1.01755 1.03572 0.94803 1.21758 1.05956 0.99676 0.88770 1.23386 0.73593 0.82005 0.89879 1.90833 1.47891 1.26518 1.73231 1.84500 1.79971 1.39909 1.28882 1.77335 0.99941 1.08261 1.28598 1.49073 1.00891 1.07953 1.51611 1.19738 0.96058 0.71161 0.99060 1.21310 1.46874 0.98023 0.91282 0.91720 1.24927 0.94641 0.96010 0.98190 1.69920 1.44858 1.06986 1.31166 0.86345 0.78660 0.77918 0.83722 1.20291 1.20852 1.19666 0.90326 0.90746 0.90757 0.82237 0.74011 0.75280 0.91683 0.90822 0.90962 0.85627 0.86647 0.72770 0.92646 0.92858 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.40 10.11 36.01 0.36 -1.04 16 2 C 0.09 1.93 6.92 -82.28 -0.57 1.36 16 3 C -0.29 -5.86 9.51 -39.82 -0.38 -6.24 16 4 C 0.26 5.37 8.10 -154.55 -1.25 4.12 16 5 N -0.60 -10.28 5.43 -11.58 -0.06 -10.35 16 6 C 0.51 7.96 7.85 -11.64 -0.09 7.87 16 7 O -0.50 -8.28 13.60 5.46 0.07 -8.21 16 8 C 0.53 6.90 7.85 -11.63 -0.09 6.80 16 9 O -0.51 -7.64 16.14 5.49 0.09 -7.56 16 10 N -0.69 -6.56 4.21 -54.27 -0.23 -6.79 16 11 C 0.15 1.03 2.14 -67.93 -0.15 0.88 16 12 H 0.10 0.93 7.39 -51.93 -0.38 0.55 16 13 C -0.17 -0.85 9.48 37.16 0.35 -0.49 16 14 C -0.12 -0.49 5.35 -27.89 -0.15 -0.64 16 15 C 0.47 3.34 8.19 36.01 0.29 3.64 16 16 O -0.50 -5.79 16.11 -18.74 -0.30 -6.09 16 17 O -0.52 -2.69 13.42 -39.26 -0.53 -3.21 16 18 N -0.31 -7.32 12.60 31.41 0.40 -6.92 16 19 N -0.31 -7.44 3.59 -58.33 -0.21 -7.65 16 20 C 0.26 6.60 5.99 -5.20 -0.03 6.57 16 21 C -0.54 -14.83 9.39 -34.44 -0.32 -15.16 16 22 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 23 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 24 N -0.89 -25.08 13.29 55.43 0.74 -24.34 16 25 Si 0.91 21.25 29.54 -169.99 -5.02 16.23 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 29 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 1.25 7.07 -51.93 -0.37 0.88 16 32 H 0.16 3.05 5.91 -52.49 -0.31 2.74 16 33 H 0.42 6.63 8.29 -40.82 -0.34 6.29 16 34 H 0.41 3.41 8.07 -40.82 -0.33 3.08 16 35 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.13 0.17 8.14 -51.93 -0.42 -0.26 16 39 H 0.12 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.41 0.85 9.10 45.56 0.41 1.27 16 41 H 0.06 1.39 7.04 -51.93 -0.37 1.03 16 42 H 0.05 1.46 8.14 -51.92 -0.42 1.03 16 43 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 379.74 15.07 5.72 5.72 Total: -1.00 -35.98 379.74 -6.06 -42.04 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -4.61 Total: 7.73 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: -2.12 Total: 9.39 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: 0.63 Total: -56.05 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.67 Total: -25.06 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.98 -6.06 -42.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611150494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.474 kcal (2) G-P(sol) polarization free energy of solvation -35.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds