Wall clock time and date at job start Tue Mar 31 2020 21:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35222 * 126.06126 * 2 1 4 4 C 1.40458 * 107.86588 * 180.14671 * 3 2 1 5 5 N 1.39934 * 125.97962 * 179.86153 * 4 3 2 6 6 C 1.34769 * 119.99876 * 359.72455 * 5 4 3 7 7 O 1.21393 * 120.00259 * 359.97438 * 6 5 4 8 8 C 1.49346 * 120.00168 * 179.97438 * 6 5 4 9 9 O 1.21363 * 119.99554 * 359.97438 * 8 6 5 10 10 N 1.34777 * 119.99974 * 180.27495 * 8 6 5 11 11 C 1.46505 * 119.99725 * 179.72256 * 10 8 6 12 12 H 1.09002 * 109.47222 * 324.99988 * 11 10 8 13 13 C 1.53005 * 109.47006 * 84.99705 * 11 10 8 14 14 C 1.52994 * 109.47138 * 204.99517 * 11 10 8 15 15 C 1.50702 * 109.46814 * 64.99878 * 14 11 10 16 16 O 1.20819 * 120.00204 * 0.02562 * 15 14 11 17 17 O 1.34231 * 119.99861 * 179.97438 * 15 14 11 18 18 N 1.31271 * 108.04192 * 359.60636 * 4 3 2 19 19 N 1.34991 * 126.06362 * 179.71525 * 2 1 3 20 20 C 1.46495 * 125.96767 * 359.96829 * 19 2 1 21 21 C 1.50701 * 109.47300 * 270.00109 * 20 19 2 22 22 H 1.07996 * 120.00012 * 0.02562 * 21 20 19 23 23 C 1.37885 * 119.99892 * 180.02562 * 21 20 19 24 24 N 1.31516 * 119.99608 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99874 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47153 * 90.00172 * 25 23 21 27 27 H 1.48498 * 109.46869 * 210.00074 * 25 23 21 28 28 H 1.48504 * 109.47030 * 329.99780 * 25 23 21 29 29 H 1.08997 * 109.46908 * 270.28961 * 1 2 3 30 30 H 1.09000 * 109.47501 * 30.28565 * 1 2 3 31 31 H 1.08999 * 109.47067 * 150.28909 * 1 2 3 32 32 H 1.07994 * 126.06620 * 0.02562 * 3 2 1 33 33 H 0.97001 * 119.99771 * 179.71386 * 5 4 3 34 34 H 0.97001 * 120.00485 * 359.71515 * 10 8 6 35 35 H 1.08994 * 109.47191 * 60.00066 * 13 11 10 36 36 H 1.09003 * 109.46937 * 180.02562 * 13 11 10 37 37 H 1.08998 * 109.47131 * 299.99980 * 13 11 10 38 38 H 1.09000 * 109.47152 * 184.99949 * 14 11 10 39 39 H 1.09001 * 109.47542 * 305.00310 * 14 11 10 40 40 H 0.96700 * 117.00123 * 180.02562 * 17 15 14 41 41 H 1.09000 * 109.47439 * 30.00900 * 20 19 2 42 42 H 1.09008 * 109.46594 * 150.00573 * 20 19 2 43 43 H 0.96999 * 119.99054 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3030 1.0931 0.0000 4 6 3.6373 0.6545 -0.0034 5 7 4.7719 1.4736 -0.0073 6 6 4.6351 2.8143 -0.0136 7 8 3.5276 3.3114 -0.0163 8 6 5.8460 3.6885 -0.0171 9 8 6.9531 3.1915 -0.0138 10 7 5.7091 5.0293 -0.0178 11 6 6.8969 5.8868 -0.0151 12 1 7.6829 5.4171 0.5764 13 6 7.3876 6.0830 -1.4510 14 6 6.5437 7.2455 0.5932 15 6 6.1780 7.0664 2.0441 16 8 6.1982 5.9652 2.5408 17 8 5.8307 8.1305 2.7850 18 7 3.6338 -0.6582 0.0032 19 7 2.3017 -1.0912 0.0054 20 6 1.8497 -2.4847 0.0130 21 6 1.6954 -2.9550 1.4364 22 1 1.9118 -2.2830 2.2536 23 6 1.2778 -4.2434 1.6953 24 7 1.0147 -5.0618 0.7000 25 14 1.0857 -4.8261 3.4596 26 1 -0.2972 -4.5494 3.9246 27 1 1.3488 -6.2859 3.5301 28 1 2.0530 -4.1064 4.3267 29 1 -0.3633 0.0052 1.0276 30 1 -0.3634 0.8874 -0.5182 31 1 -0.3633 -0.8926 -0.5093 32 1 1.9716 2.1209 0.0004 33 1 5.6568 1.0763 -0.0053 34 1 4.8242 5.4266 -0.0201 35 1 6.6018 6.5526 -2.0425 36 1 8.2717 6.7206 -1.4490 37 1 7.6392 5.1150 -1.8844 38 1 7.4019 7.9130 0.5145 39 1 5.6985 7.6755 0.0559 40 1 5.6047 7.9660 3.7107 41 1 0.8909 -2.5585 -0.5001 42 1 2.5842 -3.1075 -0.4978 43 1 0.7213 -5.9682 0.8822 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001611150494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:53 Heat of formation + Delta-G solvation = -111.205278 kcal Electronic energy + Delta-G solvation = -28573.733666 eV Core-core repulsion = 24233.887225 eV Total energy + Delta-G solvation = -4339.846441 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.54369 -41.76402 -41.12935 -39.76323 -37.57933 -36.86724 -36.38633 -35.34129 -33.11323 -32.86449 -32.67186 -29.42462 -28.86281 -27.93592 -26.75837 -24.85772 -23.72793 -22.44730 -21.63217 -21.42306 -20.96889 -19.26770 -18.98847 -18.79957 -18.25486 -17.64328 -17.55122 -17.20982 -17.11004 -16.82333 -16.41094 -16.26085 -15.90972 -15.37281 -15.12963 -14.79057 -14.68559 -14.32972 -13.85264 -13.84299 -13.74724 -13.60042 -13.50350 -13.29756 -13.16755 -13.01125 -12.90324 -12.67587 -12.58579 -12.48558 -12.25799 -12.19331 -12.06638 -11.60406 -11.59762 -11.45657 -10.80871 -10.73732 -10.38989 -9.68399 -9.25639 -8.34917 -6.51894 0.04132 0.84263 1.06076 1.26413 1.36665 1.38153 1.49319 1.70838 1.80894 2.14427 2.23637 2.32615 2.55635 2.95529 3.22512 3.49245 3.79180 4.05339 4.09114 4.16400 4.38784 4.46840 4.58739 4.63743 4.67118 4.70669 4.78743 4.83043 4.90179 4.93297 4.97812 5.06031 5.17559 5.24274 5.35572 5.51896 5.68008 5.76846 5.78879 5.81226 6.14172 6.21159 6.54344 6.59547 6.79412 6.91833 7.01188 7.18921 8.71617 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018413 B = 0.002181 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.330749 B =12833.366167 C =13198.065850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.091 3.909 3 C -0.293 4.293 4 C 0.265 3.735 5 N -0.601 5.601 6 C 0.515 3.485 7 O -0.507 6.507 8 C 0.528 3.472 9 O -0.537 6.537 10 N -0.675 5.675 11 C 0.145 3.855 12 H 0.079 0.921 13 C -0.159 4.159 14 C -0.115 4.115 15 C 0.471 3.529 16 O -0.554 6.554 17 O -0.514 6.514 18 N -0.354 5.354 19 N -0.338 5.338 20 C 0.274 3.726 21 C -0.554 4.554 22 H 0.048 0.952 23 C 0.024 3.976 24 N -0.917 5.917 25 Si 0.971 3.029 26 H -0.262 1.262 27 H -0.274 1.274 28 H -0.278 1.278 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.069 0.931 32 H 0.175 0.825 33 H 0.427 0.573 34 H 0.418 0.582 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.045 0.955 38 H 0.162 0.838 39 H 0.146 0.854 40 H 0.425 0.575 41 H 0.057 0.943 42 H 0.025 0.975 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.102 30.277 -2.730 31.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.040 4.040 3 C -0.323 4.323 4 C 0.012 3.988 5 N -0.251 5.251 6 C 0.296 3.704 7 O -0.381 6.381 8 C 0.308 3.692 9 O -0.414 6.414 10 N -0.328 5.328 11 C 0.042 3.958 12 H 0.098 0.902 13 C -0.217 4.217 14 C -0.152 4.152 15 C 0.315 3.685 16 O -0.444 6.444 17 O -0.328 6.328 18 N -0.184 5.184 19 N -0.121 5.121 20 C 0.155 3.845 21 C -0.592 4.592 22 H 0.067 0.933 23 C -0.177 4.177 24 N -0.555 5.555 25 Si 0.795 3.205 26 H -0.187 1.187 27 H -0.199 1.199 28 H -0.203 1.203 29 H 0.103 0.897 30 H 0.129 0.871 31 H 0.088 0.912 32 H 0.193 0.807 33 H 0.266 0.734 34 H 0.256 0.744 35 H 0.101 0.899 36 H 0.118 0.882 37 H 0.064 0.936 38 H 0.180 0.820 39 H 0.163 0.837 40 H 0.286 0.714 41 H 0.075 0.925 42 H 0.043 0.957 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.858 28.765 -3.054 30.252 hybrid contribution -0.480 -0.625 1.589 1.774 sum 8.378 28.140 -1.465 29.397 Atomic orbital electron populations 1.20503 0.84846 1.04504 1.04134 1.21824 0.96870 0.86198 0.99070 1.21456 0.89163 1.00335 1.21361 1.19213 0.88265 0.89336 1.02032 1.42132 1.08075 1.04798 1.70061 1.20477 0.90471 0.82081 0.77374 1.90671 1.26666 1.73971 1.46750 1.19345 0.87537 0.84307 0.78046 1.90774 1.26548 1.74752 1.49300 1.45701 1.12034 1.03883 1.71147 1.21148 0.86923 0.88877 0.98887 0.90242 1.22168 1.03437 1.02856 0.93213 1.21872 1.08583 0.98223 0.86509 1.24020 0.72103 0.81339 0.90993 1.90828 1.50507 1.28556 1.74516 1.84481 1.79328 1.39052 1.29912 1.77249 1.00381 1.09855 1.30951 1.48873 1.01547 1.07817 1.53841 1.19306 0.95106 0.72220 0.97869 1.21420 1.47649 0.98442 0.91711 0.93321 1.25718 0.93936 0.95850 1.02246 1.69998 1.44983 1.07426 1.33074 0.85363 0.79005 0.77558 0.78603 1.18722 1.19891 1.20322 0.89674 0.87109 0.91162 0.80739 0.73435 0.74423 0.89920 0.88150 0.93597 0.82009 0.83665 0.71360 0.92504 0.95726 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.64 10.11 71.24 0.72 -1.92 16 2 C 0.09 3.79 6.92 41.38 0.29 4.08 16 3 C -0.29 -11.80 9.51 22.12 0.21 -11.59 16 4 C 0.27 11.25 8.10 133.40 1.08 12.33 16 5 N -0.60 -21.04 5.43 -308.89 -1.68 -22.72 16 6 C 0.51 15.90 7.85 87.24 0.69 16.58 16 7 O -0.51 -16.36 13.60 -3.38 -0.05 -16.41 16 8 C 0.53 13.79 7.85 87.24 0.68 14.47 16 9 O -0.54 -16.24 16.14 -3.29 -0.05 -16.29 16 10 N -0.67 -11.94 4.21 -443.95 -1.87 -13.81 16 11 C 0.14 1.70 2.14 44.99 0.10 1.80 16 12 H 0.08 1.39 7.39 -2.39 -0.02 1.37 16 13 C -0.16 -1.22 9.48 71.98 0.68 -0.54 16 14 C -0.11 -0.50 5.35 29.85 0.16 -0.34 16 15 C 0.47 5.79 8.19 71.24 0.58 6.37 16 16 O -0.55 -12.63 16.11 21.98 0.35 -12.28 16 17 O -0.51 -4.11 13.42 -51.43 -0.69 -4.80 16 18 N -0.35 -17.27 12.60 -54.54 -0.69 -17.96 16 19 N -0.34 -16.58 3.59 -338.44 -1.22 -17.79 16 20 C 0.27 14.58 5.99 85.63 0.51 15.09 16 21 C -0.55 -31.39 9.39 25.60 0.24 -31.15 16 22 H 0.05 2.86 7.81 -2.91 -0.02 2.83 16 23 C 0.02 1.31 5.46 84.66 0.46 1.77 16 24 N -0.92 -52.02 13.29 21.45 0.28 -51.73 16 25 Si 0.97 43.58 29.54 68.60 2.03 45.61 16 26 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 27 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 28 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 29 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.07 2.32 7.07 -2.39 -0.02 2.30 16 32 H 0.18 6.45 5.91 -2.91 -0.02 6.43 16 33 H 0.43 13.92 8.29 -92.71 -0.77 13.15 16 34 H 0.42 6.15 8.07 -92.71 -0.75 5.40 16 35 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 37 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.16 -0.35 8.14 -2.39 -0.02 -0.37 16 39 H 0.15 -0.13 8.14 -2.39 -0.02 -0.15 16 40 H 0.43 1.08 9.10 -74.06 -0.67 0.40 16 41 H 0.06 2.96 7.04 -2.39 -0.02 2.94 16 42 H 0.02 1.42 8.14 -2.38 -0.02 1.40 16 43 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -80.51 379.74 1.74 -78.77 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -1.09 Total: 22.46 kcal Atomic # 6 Polarization: 20.55 SS G_CDS: 6.41 Total: 26.95 kcal Atomic # 7 Polarization: -118.85 SS G_CDS: -5.17 Total: -124.01 kcal Atomic # 8 Polarization: -49.34 SS G_CDS: -0.44 Total: -49.77 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -80.51 1.74 -78.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611150494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.440 kcal (2) G-P(sol) polarization free energy of solvation -80.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds