Wall clock time and date at job start Tue Mar 31 2020 20:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86804 * 119.99912 * 2 1 4 4 H 1.48503 * 109.47267 * 239.99951 * 3 2 1 5 5 H 1.48504 * 109.47283 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47381 * 120.00012 * 3 2 1 7 7 C 1.38624 * 120.00490 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00345 * 179.97438 * 7 2 1 9 9 O 1.34819 * 119.99970 * 0.02562 * 7 2 1 10 10 C 1.35779 * 117.00292 * 174.47663 * 9 7 2 11 11 C 1.38899 * 120.00141 * 353.83772 * 10 9 7 12 12 C 1.38007 * 120.00312 * 180.02562 * 11 10 9 13 13 C 1.38906 * 119.99898 * 359.97438 * 12 11 10 14 14 N 1.40029 * 120.00257 * 179.97438 * 13 12 11 15 15 C 1.34778 * 119.99821 * 214.09155 * 14 13 12 16 16 O 1.21590 * 120.00164 * 6.00091 * 15 14 13 17 17 N 1.34773 * 119.99762 * 186.00170 * 15 14 13 18 18 C 1.47170 * 120.94377 * 354.99894 * 17 15 14 19 19 C 1.53295 * 108.37626 * 230.47817 * 18 17 15 20 20 O 1.42962 * 109.26150 * 307.76754 * 19 18 17 21 21 C 1.42961 * 114.16504 * 62.56369 * 20 19 18 22 22 H 1.08996 * 109.51639 * 57.38450 * 21 20 19 23 23 C 1.52996 * 109.51576 * 177.49459 * 21 20 19 24 24 C 1.53001 * 109.47136 * 294.99794 * 23 21 20 25 25 F 1.39894 * 109.47393 * 179.97438 * 24 23 21 26 26 C 1.47149 * 120.98205 * 175.02140 * 17 15 14 27 27 C 1.38915 * 120.00020 * 0.25351 * 13 12 11 28 28 C 1.38020 * 119.99550 * 359.48772 * 27 13 12 29 29 H 0.96999 * 119.99786 * 0.02562 * 1 2 3 30 30 H 1.08004 * 119.99491 * 0.03936 * 11 10 9 31 31 H 1.08002 * 120.00033 * 180.02562 * 12 11 10 32 32 H 0.96995 * 119.99844 * 34.08640 * 14 13 12 33 33 H 1.09002 * 109.64709 * 110.77745 * 18 17 15 34 34 H 1.09000 * 109.72802 * 350.22175 * 18 17 15 35 35 H 1.09004 * 109.51071 * 187.82380 * 19 18 17 36 36 H 1.08995 * 109.51475 * 67.72078 * 19 18 17 37 37 H 1.09000 * 109.47250 * 54.99201 * 23 21 20 38 38 H 1.09001 * 109.47581 * 174.99471 * 23 21 20 39 39 H 1.09010 * 109.46775 * 299.99787 * 24 23 21 40 40 H 1.09001 * 109.47149 * 59.99412 * 24 23 21 41 41 H 1.08991 * 109.68512 * 9.75478 * 26 17 15 42 42 H 1.09005 * 109.71174 * 249.21263 * 26 17 15 43 43 H 1.07998 * 120.00190 * 179.74995 * 27 13 12 44 44 H 1.07994 * 119.99607 * 180.25389 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.1035 1.6965 -1.2125 5 1 1.2847 2.7465 -0.0006 6 1 3.1035 1.6965 1.2125 7 6 2.0090 -1.2005 0.0005 8 1 3.0889 -1.2004 0.0001 9 8 1.3350 -2.3681 0.0005 10 6 2.0697 -3.5040 -0.1154 11 6 3.4356 -3.4262 -0.3552 12 6 4.1823 -4.5808 -0.4735 13 6 3.5680 -5.8207 -0.3523 14 7 4.3255 -6.9922 -0.4729 15 6 3.7812 -8.0923 -1.0297 16 8 2.6723 -8.0375 -1.5256 17 7 4.4659 -9.2531 -1.0368 18 6 5.8503 -9.3181 -0.5417 19 6 6.7107 -10.0144 -1.6022 20 8 6.1041 -11.2588 -1.9590 21 6 4.8099 -11.1300 -2.5525 22 1 4.8769 -10.4994 -3.4390 23 6 4.2888 -12.5132 -2.9475 24 6 5.1799 -13.0998 -4.0442 25 9 4.7039 -14.3648 -4.4050 26 6 3.8516 -10.4919 -1.5402 27 6 2.2011 -5.8986 -0.1171 28 6 1.4553 -4.7438 0.0065 29 1 -0.4850 0.8401 -0.0004 30 1 3.9133 -2.4621 -0.4489 31 1 5.2445 -4.5203 -0.6596 32 1 5.2419 -7.0120 -0.1557 33 1 5.8809 -9.8872 0.3875 34 1 6.2266 -8.3100 -0.3677 35 1 7.7072 -10.1973 -1.1999 36 1 6.7853 -9.3794 -2.4849 37 1 4.3042 -13.1695 -2.0773 38 1 3.2675 -12.4247 -3.3178 39 1 5.1645 -12.4436 -4.9145 40 1 6.2013 -13.1883 -3.6740 41 1 2.9043 -10.2604 -2.0269 42 1 3.6806 -11.1801 -0.7124 43 1 1.7228 -6.8626 -0.0268 44 1 0.3934 -4.8044 0.1934 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647317964.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:57 Heat of formation + Delta-G solvation = -110.578348 kcal Electronic energy + Delta-G solvation = -28460.768009 eV Core-core repulsion = 24101.028792 eV Total energy + Delta-G solvation = -4359.739217 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -47.94667 -40.94573 -39.45614 -38.58337 -36.61847 -35.17103 -34.30990 -33.80710 -32.17819 -30.26744 -30.16223 -28.64811 -27.14421 -25.34328 -24.53676 -23.36783 -22.27719 -21.85063 -21.19906 -19.81133 -18.67822 -17.93941 -17.49870 -17.21645 -16.63635 -16.46246 -16.07537 -15.81446 -15.67213 -15.53378 -14.97193 -14.75241 -14.58340 -14.45386 -14.04359 -13.93509 -13.54518 -13.38677 -13.12122 -12.83925 -12.78579 -12.51598 -12.24546 -11.87071 -11.81490 -11.60320 -11.56122 -11.52795 -11.20130 -11.06718 -11.00574 -10.71937 -10.57750 -10.47961 -10.02663 -9.70602 -9.28357 -8.89040 -8.69523 -8.21971 -6.92663 -6.44531 -4.02810 2.11692 2.18624 2.37980 3.10563 3.12641 3.14085 3.16595 3.20802 3.70866 3.93433 3.96577 4.28503 4.36997 4.41077 4.53686 4.56786 4.63040 4.66631 4.75918 4.84043 5.07868 5.10134 5.14501 5.24666 5.27687 5.31119 5.37774 5.50258 5.52446 5.64805 5.74933 5.95762 6.12816 6.20754 6.24779 6.57370 6.60282 6.79769 6.87909 7.06630 7.18214 7.21281 7.41092 7.77574 7.85952 7.99534 8.54092 9.00560 9.71222 10.73365 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.030201 B = 0.001870 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.909238 B =14973.465069 C =15368.290427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.091 0.909 9 O -0.176 6.176 10 C 0.146 3.854 11 C -0.218 4.218 12 C -0.092 4.092 13 C 0.053 3.947 14 N -0.673 5.673 15 C 0.705 3.295 16 O -0.569 6.569 17 N -0.636 5.636 18 C 0.075 3.925 19 C 0.050 3.950 20 O -0.376 6.376 21 C 0.079 3.921 22 H 0.070 0.930 23 C -0.144 4.144 24 C 0.064 3.936 25 F -0.220 7.220 26 C 0.104 3.896 27 C -0.066 4.066 28 C -0.176 4.176 29 H 0.270 0.730 30 H 0.131 0.869 31 H 0.109 0.891 32 H 0.396 0.604 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.058 0.942 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.106 0.894 42 H 0.075 0.925 43 H 0.124 0.876 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.328 -21.919 -2.958 26.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.108 0.892 9 O -0.080 6.080 10 C 0.092 3.908 11 C -0.238 4.238 12 C -0.112 4.112 13 C -0.040 4.040 14 N -0.322 5.322 15 C 0.407 3.593 16 O -0.446 6.446 17 N -0.376 5.376 18 C -0.049 4.049 19 C -0.028 4.028 20 O -0.295 6.295 21 C 0.020 3.980 22 H 0.087 0.913 23 C -0.182 4.182 24 C 0.010 3.990 25 F -0.201 7.201 26 C -0.020 4.020 27 C -0.086 4.086 28 C -0.196 4.196 29 H 0.080 0.920 30 H 0.149 0.851 31 H 0.127 0.873 32 H 0.232 0.768 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.127 0.873 36 H 0.076 0.924 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.124 0.876 42 H 0.093 0.907 43 H 0.142 0.858 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 14.128 -21.866 -3.260 26.236 hybrid contribution 1.013 1.095 0.117 1.496 sum 15.141 -20.771 -3.143 25.895 Atomic orbital electron populations 1.70037 1.05940 1.27769 1.45907 1.25286 0.95847 0.98829 0.96603 0.85789 0.78696 0.79849 0.79118 1.19547 1.20294 1.19527 1.21247 0.91700 0.80906 1.52938 0.89185 1.84008 1.34130 1.11393 1.78450 1.19413 0.90333 0.88066 0.93007 1.20957 0.94176 0.98289 1.10347 1.20424 0.98704 0.90766 1.01352 1.17027 0.91504 0.83727 1.11715 1.42488 1.16196 1.10186 1.63368 1.15805 0.84328 0.80004 0.79173 1.90950 1.19454 1.83577 1.50577 1.47260 1.14217 1.07969 1.68117 1.22347 0.82182 1.02086 0.98237 1.22968 0.96481 0.85990 0.97342 1.87948 1.31382 1.29281 1.80913 1.22431 0.83691 0.96446 0.95407 0.91254 1.22143 1.00468 0.95461 1.00098 1.21932 0.98743 0.80233 0.98140 1.92768 1.90488 1.43494 1.93358 1.22108 0.97658 0.84548 0.97667 1.20598 0.92178 0.97868 0.97982 1.20126 1.00071 0.89530 1.09890 0.91961 0.85088 0.87281 0.76782 0.90223 0.89397 0.87333 0.92380 0.89436 0.88763 0.90848 0.89945 0.87550 0.90677 0.85820 0.86103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.26 13.67 55.48 0.76 -24.50 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 20.32 29.55 -169.99 -5.02 15.29 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.39 -10.85 9.43 30.87 0.29 -10.56 16 8 H 0.09 2.28 5.30 -52.49 -0.28 2.00 16 9 O -0.18 -5.04 9.75 -0.01 0.00 -5.04 16 10 C 0.15 3.54 6.65 -39.09 -0.26 3.28 16 11 C -0.22 -4.63 9.12 -39.42 -0.36 -4.99 16 12 C -0.09 -1.63 9.96 -39.42 -0.39 -2.02 16 13 C 0.05 0.94 6.27 -83.61 -0.52 0.41 16 14 N -0.67 -9.25 5.25 -14.18 -0.07 -9.32 16 15 C 0.70 10.19 8.04 -86.92 -0.70 9.49 16 16 O -0.57 -10.57 13.56 5.29 0.07 -10.50 16 17 N -0.64 -6.55 3.02 -177.99 -0.54 -7.09 16 18 C 0.08 0.50 6.58 -3.52 -0.02 0.48 16 19 C 0.05 0.28 6.98 37.31 0.26 0.54 16 20 O -0.38 -2.77 9.92 -35.23 -0.35 -3.12 16 21 C 0.08 0.57 2.78 -26.58 -0.07 0.50 16 22 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 23 C -0.14 -0.87 5.38 -26.73 -0.14 -1.02 16 24 C 0.06 0.41 7.45 37.16 0.28 0.68 16 25 F -0.22 -1.98 17.36 2.25 0.04 -1.94 16 26 C 0.10 0.93 5.94 -3.53 -0.02 0.91 16 27 C -0.07 -1.31 8.64 -39.41 -0.34 -1.65 16 28 C -0.18 -3.88 9.99 -39.41 -0.39 -4.28 16 29 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.13 2.75 5.71 -52.48 -0.30 2.45 16 31 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.40 3.95 6.37 -40.82 -0.26 3.69 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.46 5.76 -51.93 -0.30 0.16 16 35 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 40 H 0.08 0.48 7.82 -51.93 -0.41 0.08 16 41 H 0.11 1.11 7.06 -51.93 -0.37 0.75 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.12 2.41 6.47 -52.49 -0.34 2.07 16 44 H 0.12 2.58 8.06 -52.49 -0.42 2.16 16 LS Contribution 366.18 15.07 5.52 5.52 Total: -1.00 -34.41 366.18 -7.71 -42.12 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -5.61 Total: 5.84 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -2.50 Total: -7.26 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.15 Total: -40.91 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.28 Total: -18.66 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.41 -7.71 -42.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647317964.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.461 kcal (2) G-P(sol) polarization free energy of solvation -34.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds