Wall clock time and date at job start Tue Mar 31 2020 20:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86804 * 119.99912 * 2 1 4 4 H 1.48503 * 109.47267 * 239.99951 * 3 2 1 5 5 H 1.48504 * 109.47283 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47381 * 120.00012 * 3 2 1 7 7 C 1.38624 * 120.00490 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00345 * 179.97438 * 7 2 1 9 9 O 1.34819 * 119.99970 * 0.02562 * 7 2 1 10 10 C 1.35779 * 117.00292 * 174.47663 * 9 7 2 11 11 C 1.38899 * 120.00141 * 353.83772 * 10 9 7 12 12 C 1.38007 * 120.00312 * 180.02562 * 11 10 9 13 13 C 1.38906 * 119.99898 * 359.97438 * 12 11 10 14 14 N 1.40029 * 120.00257 * 179.97438 * 13 12 11 15 15 C 1.34778 * 119.99821 * 214.09155 * 14 13 12 16 16 O 1.21590 * 120.00164 * 6.00091 * 15 14 13 17 17 N 1.34773 * 119.99762 * 186.00170 * 15 14 13 18 18 C 1.47170 * 120.94377 * 354.99894 * 17 15 14 19 19 C 1.53295 * 108.37626 * 230.47817 * 18 17 15 20 20 O 1.42962 * 109.26150 * 307.76754 * 19 18 17 21 21 C 1.42961 * 114.16504 * 62.56369 * 20 19 18 22 22 H 1.08996 * 109.51639 * 57.38450 * 21 20 19 23 23 C 1.52996 * 109.51576 * 177.49459 * 21 20 19 24 24 C 1.53001 * 109.47136 * 294.99794 * 23 21 20 25 25 F 1.39894 * 109.47393 * 179.97438 * 24 23 21 26 26 C 1.47149 * 120.98205 * 175.02140 * 17 15 14 27 27 C 1.38915 * 120.00020 * 0.25351 * 13 12 11 28 28 C 1.38020 * 119.99550 * 359.48772 * 27 13 12 29 29 H 0.96999 * 119.99786 * 0.02562 * 1 2 3 30 30 H 1.08004 * 119.99491 * 0.03936 * 11 10 9 31 31 H 1.08002 * 120.00033 * 180.02562 * 12 11 10 32 32 H 0.96995 * 119.99844 * 34.08640 * 14 13 12 33 33 H 1.09002 * 109.64709 * 110.77745 * 18 17 15 34 34 H 1.09000 * 109.72802 * 350.22175 * 18 17 15 35 35 H 1.09004 * 109.51071 * 187.82380 * 19 18 17 36 36 H 1.08995 * 109.51475 * 67.72078 * 19 18 17 37 37 H 1.09000 * 109.47250 * 54.99201 * 23 21 20 38 38 H 1.09001 * 109.47581 * 174.99471 * 23 21 20 39 39 H 1.09010 * 109.46775 * 299.99787 * 24 23 21 40 40 H 1.09001 * 109.47149 * 59.99412 * 24 23 21 41 41 H 1.08991 * 109.68512 * 9.75478 * 26 17 15 42 42 H 1.09005 * 109.71174 * 249.21263 * 26 17 15 43 43 H 1.07998 * 120.00190 * 179.74995 * 27 13 12 44 44 H 1.07994 * 119.99607 * 180.25389 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.1035 1.6965 -1.2125 5 1 1.2847 2.7465 -0.0006 6 1 3.1035 1.6965 1.2125 7 6 2.0090 -1.2005 0.0005 8 1 3.0889 -1.2004 0.0001 9 8 1.3350 -2.3681 0.0005 10 6 2.0697 -3.5040 -0.1154 11 6 3.4356 -3.4262 -0.3552 12 6 4.1823 -4.5808 -0.4735 13 6 3.5680 -5.8207 -0.3523 14 7 4.3255 -6.9922 -0.4729 15 6 3.7812 -8.0923 -1.0297 16 8 2.6723 -8.0375 -1.5256 17 7 4.4659 -9.2531 -1.0368 18 6 5.8503 -9.3181 -0.5417 19 6 6.7107 -10.0144 -1.6022 20 8 6.1041 -11.2588 -1.9590 21 6 4.8099 -11.1300 -2.5525 22 1 4.8769 -10.4994 -3.4390 23 6 4.2888 -12.5132 -2.9475 24 6 5.1799 -13.0998 -4.0442 25 9 4.7039 -14.3648 -4.4050 26 6 3.8516 -10.4919 -1.5402 27 6 2.2011 -5.8986 -0.1171 28 6 1.4553 -4.7438 0.0065 29 1 -0.4850 0.8401 -0.0004 30 1 3.9133 -2.4621 -0.4489 31 1 5.2445 -4.5203 -0.6596 32 1 5.2419 -7.0120 -0.1557 33 1 5.8809 -9.8872 0.3875 34 1 6.2266 -8.3100 -0.3677 35 1 7.7072 -10.1973 -1.1999 36 1 6.7853 -9.3794 -2.4849 37 1 4.3042 -13.1695 -2.0773 38 1 3.2675 -12.4247 -3.3178 39 1 5.1645 -12.4436 -4.9145 40 1 6.2013 -13.1883 -3.6740 41 1 2.9043 -10.2604 -2.0269 42 1 3.6806 -11.1801 -0.7124 43 1 1.7228 -6.8626 -0.0268 44 1 0.3934 -4.8044 0.1934 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647317964.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:56 Heat of formation + Delta-G solvation = -133.719222 kcal Electronic energy + Delta-G solvation = -28461.771472 eV Core-core repulsion = 24101.028792 eV Total energy + Delta-G solvation = -4360.742680 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.55928 -41.97966 -40.74638 -39.85538 -38.20227 -36.11677 -35.36115 -34.68308 -34.10882 -31.88016 -30.77208 -29.90795 -28.26507 -27.21679 -25.17204 -24.23215 -23.80478 -22.92079 -22.20163 -20.97977 -19.86656 -19.54444 -18.92865 -18.15904 -17.78237 -17.20044 -16.80133 -16.62703 -16.52084 -16.37499 -16.31188 -16.05023 -15.62455 -15.50264 -15.49159 -15.25222 -14.85576 -14.59433 -14.50186 -14.14251 -13.65660 -13.58834 -13.44822 -13.26837 -13.17604 -12.81016 -12.70021 -12.41009 -12.33916 -12.14279 -12.10783 -11.77772 -11.59920 -11.40776 -11.33743 -11.16022 -10.95089 -10.57408 -9.84920 -9.67041 -8.57835 -8.43964 -6.11362 0.52257 0.56336 1.37046 1.38005 1.48511 1.54341 1.98644 2.20325 2.64367 2.74177 2.84246 3.17723 3.36142 3.52043 3.75692 3.87014 3.88522 4.00322 4.02625 4.09476 4.12926 4.18322 4.28458 4.30056 4.43920 4.49997 4.59742 4.65241 4.69244 4.74235 4.80097 4.88315 4.93920 5.04637 5.15589 5.17472 5.25982 5.31126 5.42494 5.56691 5.68804 5.80911 6.03684 6.07768 6.17110 6.78648 7.00126 7.40705 7.81199 8.79211 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.030201 B = 0.001870 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.909238 B =14973.465069 C =15368.290427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.026 4.026 3 Si 1.021 2.979 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.255 1.255 7 C -0.412 4.412 8 H 0.107 0.893 9 O -0.232 6.232 10 C 0.106 3.894 11 C -0.217 4.217 12 C -0.080 4.080 13 C 0.082 3.918 14 N -0.662 5.662 15 C 0.701 3.299 16 O -0.616 6.616 17 N -0.628 5.628 18 C 0.068 3.932 19 C 0.048 3.952 20 O -0.383 6.383 21 C 0.090 3.910 22 H 0.066 0.934 23 C -0.139 4.139 24 C 0.062 3.938 25 F -0.236 7.236 26 C 0.099 3.901 27 C -0.072 4.072 28 C -0.188 4.188 29 H 0.272 0.728 30 H 0.134 0.866 31 H 0.160 0.840 32 H 0.419 0.581 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.138 0.862 36 H 0.057 0.943 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.126 0.874 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.627 -23.251 -3.021 30.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.223 4.223 3 Si 0.840 3.160 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.179 1.179 7 C -0.488 4.488 8 H 0.124 0.876 9 O -0.139 6.139 10 C 0.056 3.944 11 C -0.237 4.237 12 C -0.100 4.100 13 C -0.012 4.012 14 N -0.313 5.313 15 C 0.403 3.597 16 O -0.495 6.495 17 N -0.366 5.366 18 C -0.054 4.054 19 C -0.029 4.029 20 O -0.301 6.301 21 C 0.031 3.969 22 H 0.084 0.916 23 C -0.177 4.177 24 C 0.008 3.992 25 F -0.217 7.217 26 C -0.024 4.024 27 C -0.093 4.093 28 C -0.208 4.208 29 H 0.081 0.919 30 H 0.151 0.849 31 H 0.177 0.823 32 H 0.259 0.741 33 H 0.112 0.888 34 H 0.124 0.876 35 H 0.155 0.845 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.115 0.885 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.144 0.856 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 18.531 -23.302 -3.311 29.955 hybrid contribution -0.169 1.086 0.125 1.107 sum 18.361 -22.216 -3.185 28.997 Atomic orbital electron populations 1.70204 1.08156 1.28810 1.48936 1.26641 0.96847 1.02916 0.95943 0.84621 0.77318 0.74072 0.80030 1.18010 1.20048 1.17921 1.21819 0.92661 0.81285 1.52992 0.87582 1.83972 1.35892 1.12579 1.81411 1.19859 0.91907 0.87593 0.95083 1.21124 0.93047 0.99872 1.09652 1.20785 1.00806 0.89118 0.99301 1.17119 0.90923 0.85423 1.07760 1.42274 1.16893 1.08786 1.63338 1.15984 0.83937 0.80918 0.78851 1.90935 1.21689 1.84453 1.52469 1.47315 1.15496 1.06768 1.66988 1.22696 0.79890 1.03714 0.99078 1.23156 0.97336 0.85282 0.97098 1.87957 1.31045 1.30302 1.80839 1.22281 0.83437 0.96634 0.94565 0.91565 1.22097 1.00603 0.94868 1.00163 1.22053 0.98949 0.79540 0.98685 1.92736 1.90732 1.44738 1.93524 1.22232 0.97476 0.84196 0.98494 1.20681 0.93438 0.96944 0.98196 1.20230 1.00150 0.89965 1.10433 0.91940 0.84873 0.82286 0.74055 0.88827 0.87557 0.84450 0.92422 0.89295 0.88502 0.89692 0.89258 0.89464 0.89576 0.85613 0.87061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.97 13.67 21.61 0.30 -56.68 16 2 C -0.03 -1.49 5.49 84.82 0.47 -1.02 16 3 Si 1.02 42.19 29.55 68.60 2.03 44.22 16 4 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 5 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 7 C -0.41 -23.64 9.43 67.91 0.64 -23.00 16 8 H 0.11 5.44 5.30 -2.91 -0.02 5.42 16 9 O -0.23 -14.03 9.75 -22.95 -0.22 -14.26 16 10 C 0.11 5.35 6.65 22.59 0.15 5.50 16 11 C -0.22 -9.07 9.12 22.37 0.20 -8.87 16 12 C -0.08 -2.57 9.96 22.38 0.22 -2.35 16 13 C 0.08 2.70 6.27 38.15 0.24 2.94 16 14 N -0.66 -15.81 5.25 -317.04 -1.67 -17.47 16 15 C 0.70 18.66 8.04 179.06 1.44 20.10 16 16 O -0.62 -22.41 13.56 -4.00 -0.05 -22.47 16 17 N -0.63 -11.18 3.02 -835.29 -2.52 -13.70 16 18 C 0.07 0.61 6.58 86.35 0.57 1.18 16 19 C 0.05 0.35 6.98 72.08 0.50 0.85 16 20 O -0.38 -4.34 9.92 -148.98 -1.48 -5.82 16 21 C 0.09 1.09 2.78 30.70 0.09 1.18 16 22 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 23 C -0.14 -1.45 5.38 30.59 0.16 -1.28 16 24 C 0.06 0.67 7.45 71.98 0.54 1.21 16 25 F -0.24 -3.97 17.36 44.97 0.78 -3.19 16 26 C 0.10 1.61 5.94 86.36 0.51 2.12 16 27 C -0.07 -2.85 8.64 22.38 0.19 -2.65 16 28 C -0.19 -8.63 9.99 22.38 0.22 -8.40 16 29 H 0.27 15.42 8.31 -92.71 -0.77 14.64 16 30 H 0.13 5.46 5.71 -2.91 -0.02 5.44 16 31 H 0.16 3.59 8.06 -2.91 -0.02 3.56 16 32 H 0.42 6.24 6.37 -92.71 -0.59 5.65 16 33 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.11 0.55 5.76 -2.39 -0.01 0.54 16 35 H 0.14 0.25 8.14 -2.38 -0.02 0.23 16 36 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 40 H 0.09 0.84 7.82 -2.39 -0.02 0.82 16 41 H 0.09 1.79 7.06 -2.39 -0.02 1.77 16 42 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 43 H 0.13 4.92 6.47 -2.91 -0.02 4.90 16 44 H 0.11 5.14 8.06 -2.91 -0.02 5.12 16 Total: -1.00 -80.50 366.18 3.76 -76.73 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: 0.46 Total: 25.15 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 6.15 Total: -12.51 kcal Atomic # 7 Polarization: -83.96 SS G_CDS: -3.89 Total: -87.85 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -1.76 Total: -42.55 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.78 Total: -3.19 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -80.50 3.76 -76.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647317964.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.989 kcal (2) G-P(sol) polarization free energy of solvation -80.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds