Wall clock time and date at job start Tue Mar 31 2020 20:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86799 * 119.99923 * 2 1 4 4 H 1.48491 * 109.47409 * 240.00540 * 3 2 1 5 5 H 1.48499 * 109.47245 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46999 * 120.00543 * 3 2 1 7 7 C 1.38652 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99765 * 179.97438 * 7 2 1 9 9 O 1.34824 * 120.00202 * 359.97438 * 7 2 1 10 10 C 1.35755 * 116.99992 * 174.94876 * 9 7 2 11 11 C 1.38892 * 120.07019 * 5.51251 * 10 9 7 12 12 C 1.38072 * 119.93341 * 179.97438 * 11 10 9 13 13 C 1.38335 * 120.06579 * 359.75007 * 12 11 10 14 14 C 1.38273 * 120.13522 * 0.50945 * 13 12 11 15 15 C 1.50707 * 119.96118 * 179.76496 * 14 13 12 16 16 N 1.46495 * 109.47063 * 269.72234 * 15 14 13 17 17 C 1.34779 * 119.99990 * 180.02562 * 16 15 14 18 18 O 1.21588 * 119.99474 * 5.15177 * 17 16 15 19 19 N 1.34773 * 119.99981 * 185.15080 * 17 16 15 20 20 C 1.46920 * 120.63402 * 354.91729 * 19 17 16 21 21 C 1.53187 * 108.89546 * 126.29989 * 20 19 17 22 22 C 1.53355 * 109.14971 * 54.57637 * 21 20 19 23 23 H 1.09003 * 109.42613 * 58.76047 * 22 21 20 24 24 O 1.42898 * 109.40731 * 178.68263 * 22 21 20 25 25 C 1.53033 * 109.60768 * 298.71602 * 22 21 20 26 26 H 1.09001 * 109.50119 * 181.31927 * 25 22 21 27 27 F 1.39905 * 109.50102 * 301.41898 * 25 22 21 28 28 C 1.46926 * 120.62913 * 174.89821 * 19 17 16 29 29 C 1.38121 * 120.07127 * 359.48632 * 14 13 12 30 30 H 0.97002 * 120.00130 * 359.97438 * 1 2 3 31 31 H 1.08004 * 120.03642 * 359.96072 * 11 10 9 32 32 H 1.07996 * 119.97108 * 179.97438 * 12 11 10 33 33 H 1.08000 * 119.92589 * 180.27048 * 13 12 11 34 34 H 1.09001 * 109.46862 * 149.71930 * 15 14 13 35 35 H 1.08994 * 109.47187 * 29.72659 * 15 14 13 36 36 H 0.96999 * 120.00080 * 359.97438 * 16 15 14 37 37 H 1.09001 * 109.58883 * 246.16465 * 20 19 17 38 38 H 1.09002 * 109.58523 * 6.44122 * 20 19 17 39 39 H 1.09000 * 109.49992 * 174.66304 * 21 20 19 40 40 H 1.08997 * 109.49671 * 294.75802 * 21 20 19 41 41 H 0.96703 * 114.00101 * 300.12313 * 24 22 21 42 42 H 1.09003 * 109.58674 * 353.41551 * 28 19 17 43 43 H 1.09004 * 109.58845 * 113.83948 * 28 19 17 44 44 H 1.08001 * 120.03449 * 180.23162 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2846 2.7465 0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 3.4573 -3.4394 -0.0955 12 6 4.2024 -4.5968 -0.2040 13 6 3.5684 -5.8209 -0.3195 14 6 2.1875 -5.8885 -0.3372 15 6 1.5009 -7.2236 -0.4685 16 7 1.2838 -7.5238 -1.8858 17 6 0.6806 -8.6739 -2.2464 18 8 0.2329 -9.4182 -1.3955 19 7 0.5737 -8.9989 -3.5500 20 6 1.0090 -8.0607 -4.5935 21 6 1.9973 -8.7743 -5.5212 22 6 1.3489 -10.0571 -6.0558 23 1 0.4330 -9.8049 -6.5903 24 8 2.2549 -10.7116 -6.9463 25 6 1.0178 -10.9900 -4.8888 26 1 0.5786 -11.9109 -5.2724 27 9 2.1883 -11.2888 -4.1831 28 6 0.0201 -10.2983 -3.9545 29 6 1.4366 -4.7343 -0.2289 30 1 -0.4850 0.8401 0.0004 31 1 3.9529 -2.4844 -0.0015 32 1 5.2812 -4.5468 -0.1951 33 1 4.1534 -6.7251 -0.3998 34 1 0.5412 -7.1909 0.0472 35 1 2.1256 -7.9986 -0.0244 36 1 1.5735 -6.8945 -2.5648 37 1 0.1450 -7.7262 -5.1677 38 1 1.4960 -7.2015 -4.1323 39 1 2.2540 -8.1184 -6.3531 40 1 2.8999 -9.0278 -4.9654 41 1 2.5091 -10.1776 -7.7113 42 1 -0.1432 -10.9167 -3.0719 43 1 -0.9246 -10.1464 -4.4767 44 1 0.3580 -4.7881 -0.2391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650078456.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:17 Heat of formation + Delta-G solvation = -119.888481 kcal Electronic energy + Delta-G solvation = -28925.879831 eV Core-core repulsion = 24565.736896 eV Total energy + Delta-G solvation = -4360.142934 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -47.84847 -40.46741 -39.16589 -38.27167 -36.88939 -36.04230 -34.62290 -32.37231 -31.82256 -31.46357 -30.34816 -29.11678 -26.24698 -25.35671 -24.64944 -23.81167 -21.75810 -21.42274 -20.83573 -19.80249 -18.82253 -17.86992 -17.59587 -17.02511 -16.62092 -16.33251 -16.10411 -15.82805 -15.24825 -14.93730 -14.73932 -14.49603 -14.48417 -14.17312 -14.14634 -13.76044 -13.67304 -13.53562 -13.17677 -12.80587 -12.54301 -12.35678 -12.26736 -12.15860 -12.05276 -11.69214 -11.51560 -11.39800 -10.95213 -10.84713 -10.81556 -10.72426 -10.51737 -10.50902 -10.15440 -9.43982 -9.18335 -8.91416 -8.72766 -8.27742 -7.35418 -6.51508 -4.11186 1.82540 2.24160 2.55196 3.08739 3.09182 3.10889 3.12523 3.50715 3.77488 3.90554 4.06149 4.11881 4.23188 4.47195 4.50183 4.58548 4.77023 4.90254 4.91687 5.03673 5.06457 5.15293 5.25274 5.28527 5.37236 5.44231 5.52636 5.75170 5.76514 5.83700 5.90379 6.05105 6.16346 6.23360 6.51388 6.53462 6.73198 6.79695 6.97392 7.07817 7.17344 7.25208 7.33186 7.68379 7.86706 7.92516 8.52527 8.93701 9.62337 10.66145 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017834 B = 0.002242 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.694175 B =12483.229761 C =12814.549282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.394 4.394 8 H 0.092 0.908 9 O -0.176 6.176 10 C 0.150 3.850 11 C -0.225 4.225 12 C -0.076 4.076 13 C -0.194 4.194 14 C -0.073 4.073 15 C 0.185 3.815 16 N -0.735 5.735 17 C 0.712 3.288 18 O -0.589 6.589 19 N -0.632 5.632 20 C 0.111 3.889 21 C -0.170 4.170 22 C 0.081 3.919 23 H 0.075 0.925 24 O -0.560 6.560 25 C 0.087 3.913 26 H 0.099 0.901 27 F -0.198 7.198 28 C 0.107 3.893 29 C -0.170 4.170 30 H 0.271 0.729 31 H 0.128 0.872 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.398 0.602 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.382 0.618 42 H 0.113 0.887 43 H 0.086 0.914 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.689 -16.403 -13.655 21.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.470 4.470 8 H 0.109 0.891 9 O -0.079 6.079 10 C 0.096 3.904 11 C -0.245 4.245 12 C -0.095 4.095 13 C -0.214 4.214 14 C -0.074 4.074 15 C 0.062 3.938 16 N -0.391 5.391 17 C 0.413 3.587 18 O -0.467 6.467 19 N -0.370 5.370 20 C -0.012 4.012 21 C -0.208 4.208 22 C 0.021 3.979 23 H 0.093 0.907 24 O -0.366 6.366 25 C 0.050 3.950 26 H 0.117 0.883 27 F -0.179 7.179 28 C -0.017 4.017 29 C -0.190 4.190 30 H 0.081 0.919 31 H 0.145 0.855 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.235 0.765 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.230 0.770 42 H 0.131 0.869 43 H 0.104 0.896 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.887 -17.199 -12.497 21.343 hybrid contribution 0.885 1.750 -0.783 2.112 sum 2.772 -15.449 -13.280 20.560 Atomic orbital electron populations 1.70027 1.05975 1.27890 1.45693 1.25292 0.95842 0.98851 0.96446 0.85781 0.78718 0.79733 0.79213 1.19489 1.20238 1.19458 1.21274 0.91768 0.80782 1.53177 0.89096 1.83983 1.34249 1.11398 1.78291 1.19324 0.90256 0.88067 0.92737 1.21242 0.93840 0.99104 1.10285 1.20750 0.98580 0.92236 0.97894 1.20498 0.93355 0.97129 1.10372 1.19277 0.93488 0.92850 1.01773 1.20032 1.00064 0.93525 0.80175 1.45427 1.63793 1.20725 1.09194 1.15768 0.78830 0.82083 0.81999 1.90908 1.54059 1.52607 1.49094 1.47137 1.67651 1.17768 1.04438 1.21623 0.97894 0.92092 0.89614 1.22698 1.00461 0.97005 1.00670 1.22407 0.93036 0.91944 0.90494 0.90731 1.86552 1.66285 1.45281 1.38474 1.22014 0.83622 0.99072 0.90294 0.88284 1.92854 1.50317 1.94522 1.80194 1.22042 0.94965 0.84650 1.00071 1.20092 0.99453 0.89789 1.09696 0.91885 0.85466 0.87277 0.87475 0.90857 0.91095 0.76530 0.90633 0.89376 0.89640 0.89707 0.76965 0.86924 0.89607 0.86372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.70 13.67 55.48 0.76 -23.94 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 19.94 29.55 -169.99 -5.02 14.91 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.39 -10.66 9.49 30.89 0.29 -10.37 16 8 H 0.09 2.26 5.20 -52.48 -0.27 1.99 16 9 O -0.18 -4.85 9.76 0.05 0.00 -4.85 16 10 C 0.15 3.45 6.65 -39.11 -0.26 3.19 16 11 C -0.23 -4.64 9.17 -39.40 -0.36 -5.00 16 12 C -0.08 -1.32 10.04 -39.61 -0.40 -1.72 16 13 C -0.19 -3.16 9.70 -39.53 -0.38 -3.54 16 14 C -0.07 -1.23 5.25 -104.65 -0.55 -1.78 16 15 C 0.19 2.79 5.80 -5.19 -0.03 2.76 16 16 N -0.73 -10.04 5.46 -66.42 -0.36 -10.41 16 17 C 0.71 10.31 8.29 -86.92 -0.72 9.59 16 18 O -0.59 -10.61 15.79 5.29 0.08 -10.52 16 19 N -0.63 -6.81 2.95 -178.50 -0.53 -7.33 16 20 C 0.11 0.86 6.42 -3.72 -0.02 0.84 16 21 C -0.17 -1.16 5.61 -26.45 -0.15 -1.31 16 22 C 0.08 0.54 3.25 -26.53 -0.09 0.46 16 23 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 24 O -0.56 -4.17 13.28 -35.23 -0.47 -4.64 16 25 C 0.09 0.75 3.84 -26.61 -0.10 0.64 16 26 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 27 F -0.20 -2.51 16.44 2.25 0.04 -2.48 16 28 C 0.11 0.95 6.16 -3.71 -0.02 0.93 16 29 C -0.17 -3.41 9.65 -39.40 -0.38 -3.79 16 30 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.13 2.63 5.64 -52.48 -0.30 2.33 16 32 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 33 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 35 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 36 H 0.40 4.83 5.92 -40.82 -0.24 4.59 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.70 5.56 -51.93 -0.29 0.41 16 39 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.08 0.79 7.74 -51.93 -0.40 0.39 16 41 H 0.38 1.16 9.08 45.56 0.41 1.57 16 42 H 0.11 1.21 7.04 -51.93 -0.37 0.85 16 43 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.12 2.35 8.06 -52.49 -0.42 1.92 16 LS Contribution 368.58 15.07 5.55 5.55 Total: -1.00 -34.67 368.58 -8.03 -42.70 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -4.81 Total: 9.11 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -3.27 Total: -8.11 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: -0.13 Total: -41.68 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.38 Total: -20.01 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.48 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.67 -8.03 -42.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650078456.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.188 kcal (2) G-P(sol) polarization free energy of solvation -34.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds