Wall clock time and date at job start Tue Mar 31 2020 20:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86799 * 119.99923 * 2 1 4 4 H 1.48491 * 109.47409 * 240.00540 * 3 2 1 5 5 H 1.48499 * 109.47245 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46999 * 120.00543 * 3 2 1 7 7 C 1.38652 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99765 * 179.97438 * 7 2 1 9 9 O 1.34824 * 120.00202 * 359.97438 * 7 2 1 10 10 C 1.35755 * 116.99992 * 174.94876 * 9 7 2 11 11 C 1.38892 * 120.07019 * 5.51251 * 10 9 7 12 12 C 1.38072 * 119.93341 * 179.97438 * 11 10 9 13 13 C 1.38335 * 120.06579 * 359.75007 * 12 11 10 14 14 C 1.38273 * 120.13522 * 0.50945 * 13 12 11 15 15 C 1.50707 * 119.96118 * 179.76496 * 14 13 12 16 16 N 1.46495 * 109.47063 * 269.72234 * 15 14 13 17 17 C 1.34779 * 119.99990 * 180.02562 * 16 15 14 18 18 O 1.21588 * 119.99474 * 5.15177 * 17 16 15 19 19 N 1.34773 * 119.99981 * 185.15080 * 17 16 15 20 20 C 1.46920 * 120.63402 * 354.91729 * 19 17 16 21 21 C 1.53187 * 108.89546 * 126.29989 * 20 19 17 22 22 C 1.53355 * 109.14971 * 54.57637 * 21 20 19 23 23 H 1.09003 * 109.42613 * 58.76047 * 22 21 20 24 24 O 1.42898 * 109.40731 * 178.68263 * 22 21 20 25 25 C 1.53033 * 109.60768 * 298.71602 * 22 21 20 26 26 H 1.09001 * 109.50119 * 181.31927 * 25 22 21 27 27 F 1.39905 * 109.50102 * 301.41898 * 25 22 21 28 28 C 1.46926 * 120.62913 * 174.89821 * 19 17 16 29 29 C 1.38121 * 120.07127 * 359.48632 * 14 13 12 30 30 H 0.97002 * 120.00130 * 359.97438 * 1 2 3 31 31 H 1.08004 * 120.03642 * 359.96072 * 11 10 9 32 32 H 1.07996 * 119.97108 * 179.97438 * 12 11 10 33 33 H 1.08000 * 119.92589 * 180.27048 * 13 12 11 34 34 H 1.09001 * 109.46862 * 149.71930 * 15 14 13 35 35 H 1.08994 * 109.47187 * 29.72659 * 15 14 13 36 36 H 0.96999 * 120.00080 * 359.97438 * 16 15 14 37 37 H 1.09001 * 109.58883 * 246.16465 * 20 19 17 38 38 H 1.09002 * 109.58523 * 6.44122 * 20 19 17 39 39 H 1.09000 * 109.49992 * 174.66304 * 21 20 19 40 40 H 1.08997 * 109.49671 * 294.75802 * 21 20 19 41 41 H 0.96703 * 114.00101 * 300.12313 * 24 22 21 42 42 H 1.09003 * 109.58674 * 353.41551 * 28 19 17 43 43 H 1.09004 * 109.58845 * 113.83948 * 28 19 17 44 44 H 1.08001 * 120.03449 * 180.23162 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2846 2.7465 0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 3.4573 -3.4394 -0.0955 12 6 4.2024 -4.5968 -0.2040 13 6 3.5684 -5.8209 -0.3195 14 6 2.1875 -5.8885 -0.3372 15 6 1.5009 -7.2236 -0.4685 16 7 1.2838 -7.5238 -1.8858 17 6 0.6806 -8.6739 -2.2464 18 8 0.2329 -9.4182 -1.3955 19 7 0.5737 -8.9989 -3.5500 20 6 1.0090 -8.0607 -4.5935 21 6 1.9973 -8.7743 -5.5212 22 6 1.3489 -10.0571 -6.0558 23 1 0.4330 -9.8049 -6.5903 24 8 2.2549 -10.7116 -6.9463 25 6 1.0178 -10.9900 -4.8888 26 1 0.5786 -11.9109 -5.2724 27 9 2.1883 -11.2888 -4.1831 28 6 0.0201 -10.2983 -3.9545 29 6 1.4366 -4.7343 -0.2289 30 1 -0.4850 0.8401 0.0004 31 1 3.9529 -2.4844 -0.0015 32 1 5.2812 -4.5468 -0.1951 33 1 4.1534 -6.7251 -0.3998 34 1 0.5412 -7.1909 0.0472 35 1 2.1256 -7.9986 -0.0244 36 1 1.5735 -6.8945 -2.5648 37 1 0.1450 -7.7262 -5.1677 38 1 1.4960 -7.2015 -4.1323 39 1 2.2540 -8.1184 -6.3531 40 1 2.8999 -9.0278 -4.9654 41 1 2.5091 -10.1776 -7.7113 42 1 -0.1432 -10.9167 -3.0719 43 1 -0.9246 -10.1464 -4.4767 44 1 0.3580 -4.7881 -0.2391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650078456.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:16 Heat of formation + Delta-G solvation = -145.813990 kcal Electronic energy + Delta-G solvation = -28927.004045 eV Core-core repulsion = 24565.736896 eV Total energy + Delta-G solvation = -4361.267149 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.66441 -41.50209 -40.76998 -39.04804 -38.44403 -36.82192 -35.90108 -34.28867 -32.80683 -32.18661 -31.50815 -30.68648 -27.65499 -26.97829 -25.58995 -24.48168 -23.27763 -22.56516 -22.10676 -20.72958 -19.89474 -19.29966 -18.70280 -18.29912 -17.58950 -17.18406 -16.85399 -16.80514 -16.74402 -16.34335 -16.10995 -15.80169 -15.56385 -15.39359 -15.36025 -14.97151 -14.69617 -14.44593 -14.28061 -14.09960 -13.83393 -13.67708 -13.38061 -13.22674 -13.03012 -12.82246 -12.78361 -12.52904 -12.36997 -12.28132 -12.21547 -12.13617 -11.49353 -11.31822 -11.20920 -10.94405 -10.80083 -10.31836 -9.78787 -9.62501 -9.04442 -8.46599 -6.15250 0.34999 0.69511 1.36355 1.45874 1.52219 1.58310 2.02952 2.17985 2.71467 2.93381 3.00399 3.19443 3.37262 3.44496 3.55087 3.66203 3.80906 3.88769 4.08512 4.09463 4.19305 4.30081 4.36870 4.40483 4.47946 4.51599 4.57981 4.60171 4.67079 4.72144 4.80066 4.84286 5.00779 5.11520 5.19986 5.24811 5.35649 5.41855 5.61150 5.69803 5.70802 5.76947 6.01634 6.15282 6.81917 6.83153 6.98075 7.43240 7.77984 8.76213 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017834 B = 0.002242 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.694175 B =12483.229761 C =12814.549282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.022 4.022 3 Si 1.017 2.983 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.413 4.413 8 H 0.104 0.896 9 O -0.231 6.231 10 C 0.114 3.886 11 C -0.233 4.233 12 C -0.068 4.068 13 C -0.169 4.169 14 C -0.058 4.058 15 C 0.192 3.808 16 N -0.730 5.730 17 C 0.705 3.295 18 O -0.631 6.631 19 N -0.628 5.628 20 C 0.106 3.894 21 C -0.162 4.162 22 C 0.085 3.915 23 H 0.108 0.892 24 O -0.580 6.580 25 C 0.077 3.923 26 H 0.118 0.882 27 F -0.226 7.226 28 C 0.105 3.895 29 C -0.179 4.179 30 H 0.272 0.728 31 H 0.122 0.878 32 H 0.149 0.851 33 H 0.144 0.856 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.406 0.594 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.114 0.886 40 H 0.055 0.945 41 H 0.401 0.599 42 H 0.088 0.912 43 H 0.120 0.880 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.757 -17.382 -15.707 23.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.836 3.164 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.489 4.489 8 H 0.121 0.879 9 O -0.138 6.138 10 C 0.064 3.936 11 C -0.252 4.252 12 C -0.086 4.086 13 C -0.188 4.188 14 C -0.059 4.059 15 C 0.068 3.932 16 N -0.388 5.388 17 C 0.407 3.593 18 O -0.512 6.512 19 N -0.365 5.365 20 C -0.017 4.017 21 C -0.201 4.201 22 C 0.026 3.974 23 H 0.125 0.875 24 O -0.389 6.389 25 C 0.040 3.960 26 H 0.136 0.864 27 F -0.207 7.207 28 C -0.018 4.018 29 C -0.199 4.199 30 H 0.081 0.919 31 H 0.140 0.860 32 H 0.167 0.833 33 H 0.162 0.838 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.245 0.755 37 H 0.121 0.879 38 H 0.103 0.897 39 H 0.132 0.868 40 H 0.074 0.926 41 H 0.252 0.748 42 H 0.106 0.894 43 H 0.138 0.862 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.004 -18.219 -14.613 23.696 hybrid contribution 0.340 1.679 -0.219 1.727 sum 4.344 -16.540 -14.832 22.637 Atomic orbital electron populations 1.70181 1.08058 1.28863 1.48796 1.26572 0.96796 1.02735 0.95863 0.84664 0.77389 0.74323 0.79976 1.17961 1.19868 1.18252 1.21787 0.92561 0.81340 1.53237 0.87886 1.83951 1.35906 1.12551 1.81351 1.19830 0.91616 0.87796 0.94405 1.21377 0.92982 1.00411 1.10433 1.21149 1.00427 0.91046 0.96005 1.20975 0.93044 0.98241 1.06526 1.19406 0.93939 0.92406 1.00151 1.19880 0.99570 0.92527 0.81199 1.45251 1.63845 1.20955 1.08717 1.15962 0.78646 0.81728 0.83009 1.90877 1.55814 1.53811 1.50727 1.47246 1.66812 1.18788 1.03678 1.21890 0.99252 0.91415 0.89105 1.22652 0.98853 0.97669 1.00925 1.22419 0.94234 0.90831 0.89959 0.87468 1.86508 1.66629 1.46362 1.39446 1.22339 0.82463 1.00531 0.90669 0.86394 1.92794 1.52079 1.94830 1.81038 1.22193 0.96548 0.83493 0.99606 1.20196 0.99394 0.90077 1.10226 0.91865 0.86007 0.83341 0.83805 0.91976 0.90091 0.75550 0.87939 0.89732 0.86780 0.92569 0.74792 0.89354 0.86211 0.87429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.59 13.67 21.61 0.30 -55.29 16 2 C -0.02 -1.22 5.49 84.83 0.47 -0.76 16 3 Si 1.02 41.59 29.55 68.60 2.03 43.61 16 4 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 7 C -0.41 -23.30 9.49 67.92 0.64 -22.66 16 8 H 0.10 5.26 5.20 -2.91 -0.02 5.25 16 9 O -0.23 -13.48 9.76 -22.73 -0.22 -13.70 16 10 C 0.11 5.40 6.65 22.58 0.15 5.55 16 11 C -0.23 -9.45 9.17 22.39 0.21 -9.24 16 12 C -0.07 -2.13 10.04 22.25 0.22 -1.91 16 13 C -0.17 -4.87 9.70 22.30 0.22 -4.66 16 14 C -0.06 -1.87 5.25 -19.88 -0.10 -1.98 16 15 C 0.19 5.56 5.80 85.64 0.50 6.06 16 16 N -0.73 -19.15 5.46 -482.30 -2.63 -21.78 16 17 C 0.71 19.97 8.29 179.05 1.49 21.45 16 18 O -0.63 -22.90 15.79 -3.99 -0.06 -22.96 16 19 N -0.63 -12.57 2.95 -836.92 -2.47 -15.04 16 20 C 0.11 1.36 6.42 86.36 0.55 1.91 16 21 C -0.16 -1.75 5.61 30.78 0.17 -1.58 16 22 C 0.08 0.87 3.25 30.72 0.10 0.97 16 23 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 24 O -0.58 -7.02 13.28 -148.98 -1.98 -9.00 16 25 C 0.08 1.17 3.84 30.67 0.12 1.29 16 26 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 27 F -0.23 -5.62 16.44 44.97 0.74 -4.88 16 28 C 0.11 1.71 6.16 86.36 0.53 2.24 16 29 C -0.18 -7.30 9.65 22.39 0.22 -7.08 16 30 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 31 H 0.12 5.02 5.64 -2.91 -0.02 5.00 16 32 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 33 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 34 H 0.06 1.96 8.08 -2.39 -0.02 1.94 16 35 H 0.08 2.23 8.08 -2.39 -0.02 2.21 16 36 H 0.41 9.22 5.92 -92.71 -0.55 8.67 16 37 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.08 1.14 5.56 -2.39 -0.01 1.13 16 39 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.06 0.96 7.74 -2.39 -0.02 0.94 16 41 H 0.40 1.16 9.08 -74.06 -0.67 0.49 16 42 H 0.09 1.90 7.04 -2.39 -0.02 1.89 16 43 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -81.52 368.58 1.01 -80.51 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: -0.16 Total: 28.94 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: 5.48 Total: -10.39 kcal Atomic # 7 Polarization: -87.31 SS G_CDS: -4.81 Total: -92.12 kcal Atomic # 8 Polarization: -43.40 SS G_CDS: -2.26 Total: -45.67 kcal Atomic # 9 Polarization: -5.62 SS G_CDS: 0.74 Total: -4.88 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.61 kcal Total: -81.52 1.01 -80.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650078456.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.309 kcal (2) G-P(sol) polarization free energy of solvation -81.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds