Wall clock time and date at job start Tue Mar 31 2020 20:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86801 * 120.00297 * 2 1 4 4 H 1.48494 * 109.47169 * 270.00005 * 3 2 1 5 5 H 1.48497 * 109.46963 * 29.99747 * 3 2 1 6 6 H 1.48504 * 109.47219 * 149.99481 * 3 2 1 7 7 C 1.38654 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00144 * 179.97438 * 7 2 1 9 9 O 1.34832 * 119.99597 * 359.73143 * 7 2 1 10 10 C 1.35757 * 116.99934 * 175.19924 * 9 7 2 11 11 C 1.38899 * 120.06552 * 5.19640 * 10 9 7 12 12 C 1.38086 * 119.92628 * 179.72443 * 11 10 9 13 13 C 1.38314 * 120.06927 * 0.52009 * 12 11 10 14 14 C 1.38291 * 120.14040 * 359.77404 * 13 12 11 15 15 C 1.50697 * 119.96536 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.46898 * 269.97344 * 15 14 13 17 17 C 1.34781 * 119.99938 * 179.97438 * 16 15 14 18 18 O 1.21585 * 119.99499 * 5.15906 * 17 16 15 19 19 N 1.34775 * 120.00017 * 185.15664 * 17 16 15 20 20 C 1.46930 * 120.62871 * 354.91864 * 19 17 16 21 21 C 1.53192 * 108.77168 * 126.37012 * 20 19 17 22 22 C 1.53040 * 109.31467 * 54.63427 * 21 20 19 23 23 H 1.08997 * 109.46268 * 58.64100 * 22 21 20 24 24 O 1.42900 * 109.46113 * 178.61081 * 22 21 20 25 25 C 1.53038 * 109.53622 * 298.63280 * 22 21 20 26 26 H 1.09000 * 109.49673 * 301.41349 * 25 22 21 27 27 F 1.39907 * 109.49540 * 181.35207 * 25 22 21 28 28 C 1.46922 * 120.62949 * 174.64142 * 19 17 16 29 29 C 1.38116 * 120.06496 * 359.95259 * 14 13 12 30 30 H 0.97004 * 120.00041 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.03560 * 359.97120 * 11 10 9 32 32 H 1.08000 * 119.96493 * 180.27227 * 12 11 10 33 33 H 1.07998 * 119.93161 * 179.74931 * 13 12 11 34 34 H 1.08997 * 109.47220 * 29.97337 * 15 14 13 35 35 H 1.09003 * 109.47217 * 149.97866 * 15 14 13 36 36 H 0.97000 * 119.99926 * 0.02562 * 16 15 14 37 37 H 1.09003 * 109.58302 * 246.15423 * 20 19 17 38 38 H 1.08996 * 109.58714 * 6.44043 * 20 19 17 39 39 H 1.09007 * 109.49246 * 174.58262 * 21 20 19 40 40 H 1.08994 * 109.49665 * 294.64744 * 21 20 19 41 41 H 0.96703 * 114.00137 * 179.97438 * 24 22 21 42 42 H 1.08998 * 109.58802 * 353.41171 * 28 19 17 43 43 H 1.09000 * 109.59230 * 113.84631 * 28 19 17 44 44 H 1.08003 * 120.03421 * 180.02562 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4471 2.6526 0.7000 6 1 3.5471 1.4401 0.7002 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3346 -2.3684 0.0065 10 6 2.0698 -3.5051 -0.0945 11 6 3.4572 -3.4393 -0.0892 12 6 4.2023 -4.5979 -0.1864 13 6 3.5684 -5.8220 -0.2998 14 6 2.1872 -5.8903 -0.3115 15 6 1.5007 -7.2260 -0.4358 16 7 1.2831 -7.5333 -1.8516 17 6 0.6808 -8.6857 -2.2062 18 8 0.2341 -9.4261 -1.3515 19 7 0.5737 -9.0172 -3.5081 20 6 1.0078 -8.0838 -4.5565 21 6 1.9947 -8.8043 -5.4803 22 6 1.3489 -10.0871 -6.0090 23 1 0.4325 -9.8385 -6.5442 24 8 2.2548 -10.7453 -6.8968 25 6 1.0190 -11.0146 -4.8372 26 1 1.9314 -11.2438 -4.2867 27 9 0.4569 -12.1998 -5.3238 28 6 0.0262 -10.3213 -3.9059 29 6 1.4364 -4.7355 -0.2089 30 1 -0.4850 0.8401 -0.0004 31 1 3.9527 -2.4834 -0.0051 32 1 5.2811 -4.5478 -0.1779 33 1 4.1533 -6.7263 -0.3798 34 1 2.1256 -7.9988 0.0119 35 1 0.5410 -7.1907 0.0799 36 1 1.5733 -6.9078 -2.5338 37 1 0.1432 -7.7530 -5.1320 38 1 1.4942 -7.2219 -4.0997 39 1 2.2506 -8.1543 -6.3171 40 1 2.8981 -9.0539 -4.9239 41 1 1.9111 -11.5683 -7.2706 42 1 -0.1326 -10.9365 -3.0202 43 1 -0.9200 -10.1768 -4.4274 44 1 0.3578 -4.7895 -0.2177 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650078458.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:21 Heat of formation + Delta-G solvation = -122.341131 kcal Electronic energy + Delta-G solvation = -28684.596812 eV Core-core repulsion = 24324.347523 eV Total energy + Delta-G solvation = -4360.249289 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.21888 -40.64201 -39.20385 -38.33902 -36.91454 -36.13768 -34.68885 -32.38793 -31.94994 -31.43253 -30.29332 -29.13515 -26.26177 -25.37895 -24.70618 -23.67762 -21.80454 -21.63042 -20.89109 -20.00285 -18.81100 -18.07006 -17.64906 -17.07439 -16.80204 -16.42580 -16.04740 -15.71580 -15.52500 -15.20182 -14.76636 -14.58684 -14.47344 -14.23918 -14.17928 -13.74436 -13.64333 -13.38781 -13.26790 -12.89436 -12.76306 -12.54627 -12.30746 -12.22380 -12.00969 -11.71142 -11.58184 -11.43384 -11.21948 -10.96990 -10.86555 -10.73931 -10.50531 -10.34066 -10.27429 -9.45548 -9.27521 -8.93141 -8.82281 -8.30410 -7.37536 -6.52938 -4.12538 1.78224 2.21496 2.45487 3.00782 3.07447 3.08302 3.13233 3.56807 3.69456 3.84380 3.89487 4.08292 4.16479 4.35140 4.47522 4.58001 4.73096 4.86831 5.01273 5.03021 5.04771 5.12643 5.21652 5.24882 5.32250 5.45822 5.50195 5.67050 5.71441 5.80284 5.85345 6.02451 6.08176 6.20901 6.43956 6.50849 6.65218 6.77234 6.95586 7.06251 7.14325 7.23075 7.31522 7.65873 7.78416 7.91083 8.43231 8.92408 9.60666 10.64735 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018234 B = 0.002144 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.243355 B =13054.486155 C =13384.677265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.394 4.394 8 H 0.092 0.908 9 O -0.176 6.176 10 C 0.150 3.850 11 C -0.225 4.225 12 C -0.076 4.076 13 C -0.195 4.195 14 C -0.074 4.074 15 C 0.185 3.815 16 N -0.734 5.734 17 C 0.710 3.290 18 O -0.588 6.588 19 N -0.632 5.632 20 C 0.110 3.890 21 C -0.128 4.128 22 C 0.086 3.914 23 H 0.070 0.930 24 O -0.559 6.559 25 C 0.045 3.955 26 H 0.096 0.904 27 F -0.205 7.205 28 C 0.110 3.890 29 C -0.170 4.170 30 H 0.271 0.729 31 H 0.128 0.872 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.399 0.601 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.384 0.616 42 H 0.109 0.891 43 H 0.079 0.921 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.774 -17.239 -11.725 21.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.470 4.470 8 H 0.110 0.890 9 O -0.079 6.079 10 C 0.096 3.904 11 C -0.244 4.244 12 C -0.094 4.094 13 C -0.214 4.214 14 C -0.075 4.075 15 C 0.062 3.938 16 N -0.390 5.390 17 C 0.411 3.589 18 O -0.465 6.465 19 N -0.370 5.370 20 C -0.014 4.014 21 C -0.166 4.166 22 C 0.026 3.974 23 H 0.088 0.912 24 O -0.365 6.365 25 C 0.007 3.993 26 H 0.114 0.886 27 F -0.186 7.186 28 C -0.014 4.014 29 C -0.190 4.190 30 H 0.081 0.919 31 H 0.146 0.854 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.236 0.764 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.100 0.900 41 H 0.232 0.768 42 H 0.127 0.873 43 H 0.097 0.903 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.368 -17.061 -10.876 20.511 hybrid contribution 0.318 0.658 -0.521 0.898 sum 3.687 -16.403 -11.397 20.311 Atomic orbital electron populations 1.70034 1.05985 1.27810 1.45674 1.25298 0.95847 0.98878 0.96434 0.85707 0.78940 0.80015 0.78751 1.19834 1.20205 1.19169 1.21324 0.91797 0.80748 1.53103 0.89020 1.83986 1.34281 1.11383 1.78238 1.19328 0.90260 0.88063 0.92744 1.21252 0.93837 0.99095 1.10265 1.20748 0.98586 0.92236 0.97869 1.20480 0.93316 0.97113 1.10497 1.19264 0.93479 0.92799 1.01932 1.20045 1.00122 0.93526 0.80109 1.45456 1.63666 1.20603 1.09325 1.15787 0.78920 0.82208 0.81936 1.90923 1.53910 1.52974 1.48735 1.47113 1.68053 1.17324 1.04541 1.21719 0.98163 0.92175 0.89315 1.21901 0.99419 0.95075 1.00209 1.22345 0.93454 0.92367 0.89230 0.91169 1.86518 1.44672 1.41887 1.63457 1.22701 0.98016 0.82117 0.96482 0.88618 1.92817 1.87335 1.49057 1.89388 1.21765 0.95319 0.84364 0.99994 1.20093 0.99465 0.89771 1.09671 0.91915 0.85448 0.87274 0.87505 0.91060 0.90800 0.76412 0.90330 0.88822 0.88700 0.90021 0.76801 0.87278 0.90317 0.86362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.56 13.67 55.48 0.76 -23.81 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 19.84 29.55 -169.99 -5.02 14.81 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.39 -10.57 9.49 30.89 0.29 -10.28 16 8 H 0.09 2.27 5.20 -52.49 -0.27 1.99 16 9 O -0.18 -4.80 9.76 0.02 0.00 -4.80 16 10 C 0.15 3.40 6.65 -39.11 -0.26 3.14 16 11 C -0.22 -4.55 9.17 -39.39 -0.36 -4.91 16 12 C -0.08 -1.28 10.04 -39.61 -0.40 -1.68 16 13 C -0.19 -3.04 9.70 -39.53 -0.38 -3.42 16 14 C -0.07 -1.20 5.25 -104.65 -0.55 -1.75 16 15 C 0.19 2.63 5.80 -5.20 -0.03 2.60 16 16 N -0.73 -9.30 5.46 -66.42 -0.36 -9.66 16 17 C 0.71 9.54 8.29 -86.92 -0.72 8.82 16 18 O -0.59 -10.04 15.79 5.29 0.08 -9.95 16 19 N -0.63 -6.29 2.98 -178.76 -0.53 -6.82 16 20 C 0.11 0.79 6.44 -3.71 -0.02 0.77 16 21 C -0.13 -0.86 5.73 -26.61 -0.15 -1.01 16 22 C 0.09 0.60 3.22 -26.69 -0.09 0.51 16 23 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 24 O -0.56 -4.32 13.32 -35.23 -0.47 -4.79 16 25 C 0.04 0.35 3.69 -26.83 -0.10 0.25 16 26 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 27 F -0.21 -1.79 16.66 2.25 0.04 -1.75 16 28 C 0.11 0.99 6.13 -3.93 -0.02 0.96 16 29 C -0.17 -3.32 9.65 -39.40 -0.38 -3.70 16 30 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.13 2.60 5.64 -52.49 -0.30 2.30 16 32 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 34 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 35 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 36 H 0.40 4.44 5.92 -40.82 -0.24 4.20 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.65 5.56 -51.93 -0.29 0.36 16 39 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.38 1.80 8.69 45.56 0.40 2.19 16 42 H 0.11 1.16 7.04 -51.93 -0.37 0.80 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.12 2.30 8.06 -52.48 -0.42 1.88 16 LS Contribution 368.79 15.07 5.56 5.56 Total: -1.00 -32.60 368.79 -8.07 -40.67 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -4.85 Total: 9.26 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -3.27 Total: -8.72 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: -0.14 Total: -40.29 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.39 Total: -19.54 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.60 -8.07 -40.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650078458.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.670 kcal (2) G-P(sol) polarization free energy of solvation -32.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds