Wall clock time and date at job start Tue Mar 31 2020 20:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86801 * 120.00297 * 2 1 4 4 H 1.48494 * 109.47169 * 270.00005 * 3 2 1 5 5 H 1.48497 * 109.46963 * 29.99747 * 3 2 1 6 6 H 1.48504 * 109.47219 * 149.99481 * 3 2 1 7 7 C 1.38654 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00144 * 179.97438 * 7 2 1 9 9 O 1.34832 * 119.99597 * 359.73143 * 7 2 1 10 10 C 1.35757 * 116.99934 * 175.19924 * 9 7 2 11 11 C 1.38899 * 120.06552 * 5.19640 * 10 9 7 12 12 C 1.38086 * 119.92628 * 179.72443 * 11 10 9 13 13 C 1.38314 * 120.06927 * 0.52009 * 12 11 10 14 14 C 1.38291 * 120.14040 * 359.77404 * 13 12 11 15 15 C 1.50697 * 119.96536 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.46898 * 269.97344 * 15 14 13 17 17 C 1.34781 * 119.99938 * 179.97438 * 16 15 14 18 18 O 1.21585 * 119.99499 * 5.15906 * 17 16 15 19 19 N 1.34775 * 120.00017 * 185.15664 * 17 16 15 20 20 C 1.46930 * 120.62871 * 354.91864 * 19 17 16 21 21 C 1.53192 * 108.77168 * 126.37012 * 20 19 17 22 22 C 1.53040 * 109.31467 * 54.63427 * 21 20 19 23 23 H 1.08997 * 109.46268 * 58.64100 * 22 21 20 24 24 O 1.42900 * 109.46113 * 178.61081 * 22 21 20 25 25 C 1.53038 * 109.53622 * 298.63280 * 22 21 20 26 26 H 1.09000 * 109.49673 * 301.41349 * 25 22 21 27 27 F 1.39907 * 109.49540 * 181.35207 * 25 22 21 28 28 C 1.46922 * 120.62949 * 174.64142 * 19 17 16 29 29 C 1.38116 * 120.06496 * 359.95259 * 14 13 12 30 30 H 0.97004 * 120.00041 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.03560 * 359.97120 * 11 10 9 32 32 H 1.08000 * 119.96493 * 180.27227 * 12 11 10 33 33 H 1.07998 * 119.93161 * 179.74931 * 13 12 11 34 34 H 1.08997 * 109.47220 * 29.97337 * 15 14 13 35 35 H 1.09003 * 109.47217 * 149.97866 * 15 14 13 36 36 H 0.97000 * 119.99926 * 0.02562 * 16 15 14 37 37 H 1.09003 * 109.58302 * 246.15423 * 20 19 17 38 38 H 1.08996 * 109.58714 * 6.44043 * 20 19 17 39 39 H 1.09007 * 109.49246 * 174.58262 * 21 20 19 40 40 H 1.08994 * 109.49665 * 294.64744 * 21 20 19 41 41 H 0.96703 * 114.00137 * 179.97438 * 24 22 21 42 42 H 1.08998 * 109.58802 * 353.41171 * 28 19 17 43 43 H 1.09000 * 109.59230 * 113.84631 * 28 19 17 44 44 H 1.08003 * 120.03421 * 180.02562 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4471 2.6526 0.7000 6 1 3.5471 1.4401 0.7002 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0001 9 8 1.3346 -2.3684 0.0065 10 6 2.0698 -3.5051 -0.0945 11 6 3.4572 -3.4393 -0.0892 12 6 4.2023 -4.5979 -0.1864 13 6 3.5684 -5.8220 -0.2998 14 6 2.1872 -5.8903 -0.3115 15 6 1.5007 -7.2260 -0.4358 16 7 1.2831 -7.5333 -1.8516 17 6 0.6808 -8.6857 -2.2062 18 8 0.2341 -9.4261 -1.3515 19 7 0.5737 -9.0172 -3.5081 20 6 1.0078 -8.0838 -4.5565 21 6 1.9947 -8.8043 -5.4803 22 6 1.3489 -10.0871 -6.0090 23 1 0.4325 -9.8385 -6.5442 24 8 2.2548 -10.7453 -6.8968 25 6 1.0190 -11.0146 -4.8372 26 1 1.9314 -11.2438 -4.2867 27 9 0.4569 -12.1998 -5.3238 28 6 0.0262 -10.3213 -3.9059 29 6 1.4364 -4.7355 -0.2089 30 1 -0.4850 0.8401 -0.0004 31 1 3.9527 -2.4834 -0.0051 32 1 5.2811 -4.5478 -0.1779 33 1 4.1533 -6.7263 -0.3798 34 1 2.1256 -7.9988 0.0119 35 1 0.5410 -7.1907 0.0799 36 1 1.5733 -6.9078 -2.5338 37 1 0.1432 -7.7530 -5.1320 38 1 1.4942 -7.2219 -4.0997 39 1 2.2506 -8.1543 -6.3171 40 1 2.8981 -9.0539 -4.9239 41 1 1.9111 -11.5683 -7.2706 42 1 -0.1326 -10.9365 -3.0202 43 1 -0.9200 -10.1768 -4.4274 44 1 0.3578 -4.7895 -0.2177 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650078458.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:20 Heat of formation + Delta-G solvation = -145.905229 kcal Electronic energy + Delta-G solvation = -28685.618628 eV Core-core repulsion = 24324.347523 eV Total energy + Delta-G solvation = -4361.271105 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -48.89234 -41.60845 -40.77438 -39.15175 -38.43706 -36.90634 -35.90981 -34.28336 -32.85222 -32.28361 -31.38841 -30.65191 -27.63787 -26.96531 -25.64368 -24.35537 -23.25953 -22.58864 -22.25238 -20.91724 -19.89395 -19.27118 -18.70710 -18.59651 -17.68305 -17.23804 -16.85635 -16.74436 -16.57538 -16.40379 -16.16516 -16.08595 -15.58232 -15.45344 -15.15466 -15.13839 -14.75452 -14.39927 -14.20805 -13.97628 -13.90029 -13.66270 -13.55255 -13.32208 -13.07184 -13.01074 -12.64465 -12.53025 -12.34867 -12.26155 -12.24241 -12.10634 -11.80952 -11.41374 -11.19790 -10.91452 -10.80343 -10.33773 -9.77313 -9.69760 -9.02725 -8.46375 -6.14739 0.36132 0.71450 1.36663 1.44057 1.50960 1.53651 1.98044 2.18055 2.70049 2.92876 3.02227 3.19034 3.23056 3.38900 3.45687 3.53269 3.74628 3.82409 4.00055 4.10546 4.14747 4.31813 4.37486 4.43712 4.45444 4.53500 4.54815 4.57287 4.66618 4.71721 4.74175 4.89050 5.02793 5.12145 5.12650 5.26548 5.32720 5.35988 5.62683 5.71360 5.71933 5.74719 6.02485 6.17484 6.65415 6.80541 6.98666 7.40116 7.79007 8.76703 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018234 B = 0.002144 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.243355 B =13054.486155 C =13384.677265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 1.017 2.983 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.252 1.252 7 C -0.411 4.411 8 H 0.104 0.896 9 O -0.232 6.232 10 C 0.112 3.888 11 C -0.233 4.233 12 C -0.069 4.069 13 C -0.166 4.166 14 C -0.059 4.059 15 C 0.192 3.808 16 N -0.728 5.728 17 C 0.707 3.293 18 O -0.628 6.628 19 N -0.625 5.625 20 C 0.107 3.893 21 C -0.122 4.122 22 C 0.089 3.911 23 H 0.085 0.915 24 O -0.572 6.572 25 C 0.053 3.947 26 H 0.088 0.912 27 F -0.209 7.209 28 C 0.109 3.891 29 C -0.179 4.179 30 H 0.272 0.728 31 H 0.120 0.880 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.408 0.592 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.073 0.927 41 H 0.396 0.604 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.371 -18.537 -13.180 23.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.176 1.176 7 C -0.487 4.487 8 H 0.121 0.879 9 O -0.139 6.139 10 C 0.062 3.938 11 C -0.253 4.253 12 C -0.087 4.087 13 C -0.185 4.185 14 C -0.059 4.059 15 C 0.068 3.932 16 N -0.385 5.385 17 C 0.409 3.591 18 O -0.509 6.509 19 N -0.362 5.362 20 C -0.015 4.015 21 C -0.160 4.160 22 C 0.029 3.971 23 H 0.103 0.897 24 O -0.381 6.381 25 C 0.015 3.985 26 H 0.106 0.894 27 F -0.190 7.190 28 C -0.015 4.015 29 C -0.199 4.199 30 H 0.081 0.919 31 H 0.138 0.862 32 H 0.166 0.834 33 H 0.166 0.834 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.246 0.754 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.127 0.873 40 H 0.091 0.909 41 H 0.246 0.754 42 H 0.107 0.893 43 H 0.112 0.888 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.009 -18.416 -12.384 22.992 hybrid contribution -0.389 0.663 -0.127 0.779 sum 5.621 -17.753 -12.511 22.434 Atomic orbital electron populations 1.70185 1.08057 1.28760 1.48939 1.26566 0.96795 1.02744 0.95943 0.84601 0.77833 0.74647 0.79256 1.18738 1.19932 1.17570 1.21817 0.92543 0.81336 1.53042 0.87871 1.83954 1.35946 1.12543 1.81439 1.19853 0.91637 0.87806 0.94487 1.21381 0.92981 1.00414 1.10482 1.21158 1.00426 0.91093 0.96026 1.20989 0.92984 0.98257 1.06294 1.19416 0.93952 0.92380 1.00179 1.19905 0.99639 0.92517 0.81124 1.45257 1.63665 1.20747 1.08856 1.15903 0.78658 0.81853 0.82707 1.90899 1.55585 1.54166 1.50283 1.47128 1.67222 1.17993 1.03899 1.21937 0.99151 0.91690 0.88751 1.21856 0.98711 0.95148 1.00316 1.22363 0.93988 0.91974 0.88771 0.89695 1.86488 1.45309 1.42778 1.63496 1.22615 0.97131 0.82041 0.96717 0.89384 1.92811 1.87386 1.49418 1.89393 1.21813 0.96401 0.83756 0.99540 1.20213 0.99395 0.90105 1.10225 0.91904 0.86175 0.83362 0.83431 0.89588 0.92059 0.75371 0.88518 0.88445 0.87299 0.90855 0.75400 0.89295 0.88761 0.87512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.51 13.67 21.61 0.30 -55.22 16 2 C -0.02 -1.27 5.49 84.83 0.47 -0.81 16 3 Si 1.02 41.53 29.55 68.60 2.03 43.56 16 4 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 7 C -0.41 -23.07 9.49 67.92 0.64 -22.42 16 8 H 0.10 5.25 5.20 -2.91 -0.02 5.23 16 9 O -0.23 -13.44 9.76 -22.84 -0.22 -13.67 16 10 C 0.11 5.25 6.65 22.58 0.15 5.40 16 11 C -0.23 -9.28 9.17 22.39 0.21 -9.07 16 12 C -0.07 -2.07 10.04 22.25 0.22 -1.84 16 13 C -0.17 -4.47 9.70 22.30 0.22 -4.25 16 14 C -0.06 -1.77 5.25 -19.88 -0.10 -1.88 16 15 C 0.19 5.09 5.80 85.63 0.50 5.59 16 16 N -0.73 -17.09 5.46 -482.30 -2.63 -19.73 16 17 C 0.71 18.13 8.29 179.05 1.49 19.62 16 18 O -0.63 -21.21 15.79 -3.98 -0.06 -21.28 16 19 N -0.63 -11.40 2.98 -837.74 -2.49 -13.89 16 20 C 0.11 1.26 6.44 86.36 0.56 1.82 16 21 C -0.12 -1.30 5.73 30.67 0.18 -1.13 16 22 C 0.09 1.01 3.22 30.62 0.10 1.11 16 23 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 24 O -0.57 -7.49 13.32 -148.98 -1.98 -9.47 16 25 C 0.05 0.74 3.69 30.53 0.11 0.86 16 26 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 27 F -0.21 -3.33 16.66 44.97 0.75 -2.58 16 28 C 0.11 1.82 6.13 86.22 0.53 2.34 16 29 C -0.18 -7.11 9.65 22.39 0.22 -6.90 16 30 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 31 H 0.12 4.89 5.64 -2.91 -0.02 4.88 16 32 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 33 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 34 H 0.09 2.09 8.08 -2.39 -0.02 2.07 16 35 H 0.06 1.82 8.08 -2.39 -0.02 1.80 16 36 H 0.41 8.13 5.92 -92.71 -0.55 7.58 16 37 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.10 1.09 5.56 -2.39 -0.01 1.08 16 39 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.40 2.86 8.69 -74.06 -0.64 2.22 16 42 H 0.09 1.88 7.04 -2.39 -0.02 1.86 16 43 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.11 4.39 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -75.64 368.79 1.01 -74.62 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: -0.13 Total: 29.21 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: 5.47 Total: -11.57 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -4.83 Total: -88.84 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: -2.27 Total: -44.41 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.75 Total: -2.58 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -75.64 1.01 -74.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650078458.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.283 kcal (2) G-P(sol) polarization free energy of solvation -75.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds