Wall clock time and date at job start Tue Mar 31 2020 20:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99834 * 2 1 4 4 H 1.48503 * 109.47134 * 240.00078 * 3 2 1 5 5 H 1.48496 * 109.47137 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46659 * 120.00062 * 3 2 1 7 7 C 1.37875 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00047 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99831 * 0.02562 * 7 2 1 10 10 O 1.42906 * 113.38235 * 313.07563 * 9 7 2 11 11 C 1.53517 * 114.17065 * 180.02562 * 9 7 2 12 12 N 1.47479 * 87.99753 * 220.35504 * 11 9 7 13 13 C 1.46897 * 110.99965 * 138.66774 * 12 11 9 14 14 C 1.50703 * 109.46984 * 169.99962 * 13 12 11 15 15 O 1.21274 * 119.99976 * 0.02562 * 14 13 12 16 16 N 1.34781 * 119.99878 * 180.02562 * 14 13 12 17 17 C 1.46501 * 119.99803 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47050 * 179.97438 * 17 16 14 19 19 O 1.42901 * 109.47077 * 64.99715 * 18 17 16 20 20 C 1.35902 * 117.00001 * 180.02562 * 19 18 17 21 21 C 1.38772 * 120.03984 * 359.72554 * 20 19 18 22 22 C 1.38135 * 119.99148 * 179.74719 * 21 20 19 23 23 C 1.38255 * 120.07819 * 0.52670 * 22 21 20 24 24 C 1.38473 * 120.08592 * 359.75307 * 23 22 21 25 25 F 1.35100 * 119.99815 * 180.02562 * 24 23 22 26 26 C 1.38387 * 120.00415 * 359.96893 * 24 23 22 27 27 C 1.47487 * 87.83637 * 26.97912 * 12 11 9 28 28 H 0.96998 * 120.00131 * 0.02562 * 1 2 3 29 29 H 0.96696 * 113.99578 * 46.92800 * 10 9 7 30 30 H 1.09002 * 113.47888 * 105.55862 * 11 9 7 31 31 H 1.09003 * 113.47419 * 335.15196 * 11 9 7 32 32 H 1.08993 * 109.47675 * 290.00415 * 13 12 11 33 33 H 1.09000 * 109.47111 * 50.00574 * 13 12 11 34 34 H 0.96999 * 119.99814 * 359.97438 * 16 14 13 35 35 H 1.08993 * 109.47143 * 300.00062 * 17 16 14 36 36 H 1.09000 * 109.46914 * 59.99774 * 17 16 14 37 37 H 1.08999 * 109.47311 * 184.99936 * 18 17 16 38 38 H 1.09007 * 109.47242 * 305.00239 * 18 17 16 39 39 H 1.08001 * 120.00551 * 0.02562 * 21 20 19 40 40 H 1.07994 * 119.96210 * 180.27775 * 22 21 20 41 41 H 1.08003 * 119.95708 * 179.76525 * 23 22 21 42 42 H 1.07998 * 120.03657 * 180.02562 * 26 24 23 43 43 H 1.09004 * 113.47787 * 87.75324 * 27 12 11 44 44 H 1.09001 * 113.47615 * 218.16496 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 8 0.1914 -2.5430 0.9560 11 6 2.1498 -3.7438 -0.0016 12 7 1.2097 -4.3590 -0.9569 13 6 1.9304 -5.0855 -2.0109 14 6 0.9524 -5.8984 -2.8194 15 8 -0.2286 -5.8745 -2.5450 16 7 1.3904 -6.6520 -3.8475 17 6 0.4395 -7.4418 -4.6339 18 6 1.1902 -8.1985 -5.7315 19 8 2.0717 -9.1521 -5.1352 20 6 2.8187 -9.9130 -5.9778 21 6 2.7011 -9.7489 -7.3507 22 6 3.4647 -10.5192 -8.2061 23 6 4.3385 -11.4616 -7.6964 24 6 4.4542 -11.6321 -6.3271 25 9 5.3091 -12.5531 -5.8309 26 6 3.6951 -10.8583 -5.4668 27 6 0.8566 -2.9974 -1.4004 28 1 -0.4850 0.8400 -0.0004 29 1 -0.3731 -1.7579 0.9541 30 1 2.1858 -4.2533 0.9614 31 1 3.1398 -3.5645 -0.4209 32 1 2.4367 -4.3731 -2.6622 33 1 2.6663 -5.7491 -1.5567 34 1 2.3350 -6.6707 -4.0672 35 1 -0.0674 -8.1538 -3.9827 36 1 -0.2958 -6.7779 -5.0884 37 1 0.4746 -8.7154 -6.3710 38 1 1.7682 -7.4934 -6.3289 39 1 2.0160 -9.0159 -7.7503 40 1 3.3761 -10.3880 -9.2744 41 1 4.9318 -12.0655 -8.3671 42 1 3.7853 -10.9905 -4.3987 43 1 1.5012 -2.6181 -2.1933 44 1 -0.2032 -2.8747 -1.6239 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001653387855.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:48 Heat of formation + Delta-G solvation = -94.397565 kcal Electronic energy + Delta-G solvation = -27873.045201 eV Core-core repulsion = 23514.007635 eV Total energy + Delta-G solvation = -4359.037565 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.35039 -40.66884 -39.75073 -38.58163 -37.75698 -34.82869 -34.21348 -32.04342 -31.63578 -30.72177 -30.02280 -28.88900 -26.18251 -24.87531 -24.24800 -23.36055 -22.71827 -21.80570 -20.30178 -19.13020 -18.64506 -17.48804 -17.11550 -16.86855 -16.74278 -16.60725 -16.37616 -16.02242 -15.54742 -15.40045 -15.03648 -14.71974 -14.63184 -14.24434 -14.11406 -13.89998 -13.55535 -13.25670 -13.02881 -12.80949 -12.52040 -12.39359 -12.13343 -11.96168 -11.83781 -11.53077 -11.49830 -11.39897 -11.17703 -10.85594 -10.71569 -10.34116 -9.98063 -9.49928 -9.39074 -9.27619 -9.07393 -8.81829 -8.64353 -8.17500 -7.86151 -6.26051 -4.36584 0.61812 0.77970 2.49073 2.94473 3.07413 3.14469 3.20359 3.26388 3.28256 3.85953 4.14408 4.24618 4.39651 4.43183 4.52125 4.54370 4.70814 4.80257 4.87085 4.88951 4.97062 5.10401 5.33114 5.42776 5.44208 5.55330 5.58321 5.62015 5.70088 5.80070 5.91440 6.03089 6.19405 6.29069 6.34229 6.39877 6.69387 6.81268 7.07795 7.17811 7.33753 7.53264 7.77046 7.92749 8.02148 8.49281 8.65407 9.33454 9.72586 10.79921 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021197 B = 0.001750 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.632776 B =15994.805648 C =16201.878838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.070 3.930 3 Si 0.905 3.095 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.066 0.934 9 C 0.249 3.751 10 O -0.568 6.568 11 C 0.002 3.998 12 N -0.450 5.450 13 C -0.002 4.002 14 C 0.517 3.483 15 O -0.512 6.512 16 N -0.741 5.741 17 C 0.125 3.875 18 C 0.047 3.953 19 O -0.305 6.305 20 C 0.163 3.837 21 C -0.221 4.221 22 C -0.050 4.050 23 C -0.194 4.194 24 C 0.139 3.861 25 F -0.134 7.134 26 C -0.190 4.190 27 C -0.019 4.019 28 H 0.272 0.728 29 H 0.390 0.610 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.400 0.600 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.145 0.855 43 H 0.057 0.943 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.379 -19.476 -18.607 27.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.574 4.574 8 H 0.084 0.916 9 C 0.207 3.793 10 O -0.381 6.381 11 C -0.126 4.126 12 N -0.172 5.172 13 C -0.134 4.134 14 C 0.303 3.697 15 O -0.384 6.384 16 N -0.397 5.397 17 C 0.001 3.999 18 C -0.028 4.028 19 O -0.219 6.219 20 C 0.116 3.884 21 C -0.240 4.240 22 C -0.068 4.068 23 C -0.213 4.213 24 C 0.120 3.880 25 F -0.112 7.112 26 C -0.210 4.210 27 C -0.148 4.148 28 H 0.083 0.917 29 H 0.246 0.754 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.234 0.766 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.162 0.838 43 H 0.075 0.925 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.072 -20.422 -17.805 27.766 hybrid contribution 1.480 1.662 -0.986 2.434 sum 7.551 -18.760 -18.792 27.606 Atomic orbital electron populations 1.69299 1.06120 1.27974 1.50254 1.25085 0.94993 0.99715 0.93415 0.86441 0.79505 0.82009 0.78792 1.20096 1.21007 1.19920 1.21520 0.93588 0.90476 1.51807 0.91554 1.19340 0.85081 0.90464 0.84418 1.86042 1.44982 1.48047 1.58990 1.24137 0.95248 0.96608 0.96656 1.68890 1.25737 1.14072 1.08524 1.22621 0.95650 0.98958 0.96165 1.20780 0.90079 0.79235 0.79584 1.90709 1.17448 1.63094 1.67178 1.45994 1.11046 1.48709 1.33931 1.21310 0.91848 0.94108 0.92671 1.23229 0.92603 0.90397 0.96595 1.86160 1.52586 1.48629 1.34487 1.18611 0.90552 0.90442 0.88763 1.21368 1.05350 1.05082 0.92169 1.20802 0.93032 0.92897 1.00066 1.21076 1.03844 1.03065 0.93365 1.17304 0.90201 0.88764 0.91745 1.91530 1.67797 1.63596 1.88315 1.20303 1.00245 0.99077 1.01352 1.24807 1.01266 0.86952 1.01767 0.91718 0.75408 0.90776 0.91722 0.91355 0.88891 0.76636 0.90316 0.89199 0.89996 0.90796 0.84646 0.84601 0.84575 0.83752 0.92470 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.28 11.02 55.43 0.61 -23.67 16 2 C 0.07 1.85 5.40 -17.82 -0.10 1.75 16 3 Si 0.91 20.23 29.54 -169.99 -5.02 15.20 16 4 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -14.21 8.69 -34.44 -0.30 -14.51 16 8 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.25 6.42 1.57 -91.18 -0.14 6.28 16 10 O -0.57 -15.96 13.54 -35.23 -0.48 -16.44 16 11 C 0.00 0.05 7.09 -7.54 -0.05 -0.01 16 12 N -0.45 -9.82 5.82 -245.85 -1.43 -11.25 16 13 C 0.00 -0.03 5.30 -4.98 -0.03 -0.06 16 14 C 0.52 8.53 7.90 -10.98 -0.09 8.44 16 15 O -0.51 -10.86 16.43 5.56 0.09 -10.77 16 16 N -0.74 -8.47 5.50 -60.29 -0.33 -8.80 16 17 C 0.12 1.18 6.06 -4.04 -0.02 1.15 16 18 C 0.05 0.30 4.87 37.16 0.18 0.48 16 19 O -0.31 -2.62 10.08 -19.43 -0.20 -2.82 16 20 C 0.16 1.31 6.68 -39.23 -0.26 1.05 16 21 C -0.22 -1.37 9.04 -39.42 -0.36 -1.73 16 22 C -0.05 -0.27 10.04 -39.61 -0.40 -0.67 16 23 C -0.19 -1.27 10.02 -39.49 -0.40 -1.67 16 24 C 0.14 1.15 7.30 -39.44 -0.29 0.87 16 25 F -0.13 -1.23 17.27 2.25 0.04 -1.19 16 26 C -0.19 -1.63 9.97 -39.37 -0.39 -2.02 16 27 C -0.02 -0.45 7.13 -7.47 -0.05 -0.50 16 28 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.39 11.08 6.33 45.56 0.29 11.37 16 30 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 31 H 0.06 1.26 7.87 -51.93 -0.41 0.85 16 32 H 0.07 1.03 7.30 -51.93 -0.38 0.65 16 33 H 0.09 1.31 8.08 -51.93 -0.42 0.89 16 34 H 0.40 3.56 8.47 -40.82 -0.35 3.22 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.37 7.65 -51.93 -0.40 -0.03 16 38 H 0.07 0.37 7.67 -51.92 -0.40 -0.03 16 39 H 0.14 0.57 6.30 -52.49 -0.33 0.24 16 40 H 0.14 0.40 8.06 -52.49 -0.42 -0.02 16 41 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 42 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 43 H 0.06 1.30 7.37 -51.93 -0.38 0.91 16 44 H 0.07 1.88 8.14 -51.93 -0.42 1.46 16 LS Contribution 377.49 15.07 5.69 5.69 Total: -1.00 -32.99 377.49 -9.00 -41.99 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -5.28 Total: 13.20 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -2.69 Total: -1.14 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: -1.15 Total: -43.73 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -0.58 Total: -30.02 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.99 -9.00 -41.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653387855.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.408 kcal (2) G-P(sol) polarization free energy of solvation -32.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds