Wall clock time and date at job start Tue Mar 31 2020 20:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99834 * 2 1 4 4 H 1.48503 * 109.47134 * 240.00078 * 3 2 1 5 5 H 1.48496 * 109.47137 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46659 * 120.00062 * 3 2 1 7 7 C 1.37875 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00047 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99831 * 0.02562 * 7 2 1 10 10 O 1.42906 * 113.38235 * 313.07563 * 9 7 2 11 11 C 1.53517 * 114.17065 * 180.02562 * 9 7 2 12 12 N 1.47479 * 87.99753 * 220.35504 * 11 9 7 13 13 C 1.46897 * 110.99965 * 138.66774 * 12 11 9 14 14 C 1.50703 * 109.46984 * 169.99962 * 13 12 11 15 15 O 1.21274 * 119.99976 * 0.02562 * 14 13 12 16 16 N 1.34781 * 119.99878 * 180.02562 * 14 13 12 17 17 C 1.46501 * 119.99803 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47050 * 179.97438 * 17 16 14 19 19 O 1.42901 * 109.47077 * 64.99715 * 18 17 16 20 20 C 1.35902 * 117.00001 * 180.02562 * 19 18 17 21 21 C 1.38772 * 120.03984 * 359.72554 * 20 19 18 22 22 C 1.38135 * 119.99148 * 179.74719 * 21 20 19 23 23 C 1.38255 * 120.07819 * 0.52670 * 22 21 20 24 24 C 1.38473 * 120.08592 * 359.75307 * 23 22 21 25 25 F 1.35100 * 119.99815 * 180.02562 * 24 23 22 26 26 C 1.38387 * 120.00415 * 359.96893 * 24 23 22 27 27 C 1.47487 * 87.83637 * 26.97912 * 12 11 9 28 28 H 0.96998 * 120.00131 * 0.02562 * 1 2 3 29 29 H 0.96696 * 113.99578 * 46.92800 * 10 9 7 30 30 H 1.09002 * 113.47888 * 105.55862 * 11 9 7 31 31 H 1.09003 * 113.47419 * 335.15196 * 11 9 7 32 32 H 1.08993 * 109.47675 * 290.00415 * 13 12 11 33 33 H 1.09000 * 109.47111 * 50.00574 * 13 12 11 34 34 H 0.96999 * 119.99814 * 359.97438 * 16 14 13 35 35 H 1.08993 * 109.47143 * 300.00062 * 17 16 14 36 36 H 1.09000 * 109.46914 * 59.99774 * 17 16 14 37 37 H 1.08999 * 109.47311 * 184.99936 * 18 17 16 38 38 H 1.09007 * 109.47242 * 305.00239 * 18 17 16 39 39 H 1.08001 * 120.00551 * 0.02562 * 21 20 19 40 40 H 1.07994 * 119.96210 * 180.27775 * 22 21 20 41 41 H 1.08003 * 119.95708 * 179.76525 * 23 22 21 42 42 H 1.07998 * 120.03657 * 180.02562 * 26 24 23 43 43 H 1.09004 * 113.47787 * 87.75324 * 27 12 11 44 44 H 1.09001 * 113.47615 * 218.16496 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 8 0.1914 -2.5430 0.9560 11 6 2.1498 -3.7438 -0.0016 12 7 1.2097 -4.3590 -0.9569 13 6 1.9304 -5.0855 -2.0109 14 6 0.9524 -5.8984 -2.8194 15 8 -0.2286 -5.8745 -2.5450 16 7 1.3904 -6.6520 -3.8475 17 6 0.4395 -7.4418 -4.6339 18 6 1.1902 -8.1985 -5.7315 19 8 2.0717 -9.1521 -5.1352 20 6 2.8187 -9.9130 -5.9778 21 6 2.7011 -9.7489 -7.3507 22 6 3.4647 -10.5192 -8.2061 23 6 4.3385 -11.4616 -7.6964 24 6 4.4542 -11.6321 -6.3271 25 9 5.3091 -12.5531 -5.8309 26 6 3.6951 -10.8583 -5.4668 27 6 0.8566 -2.9974 -1.4004 28 1 -0.4850 0.8400 -0.0004 29 1 -0.3731 -1.7579 0.9541 30 1 2.1858 -4.2533 0.9614 31 1 3.1398 -3.5645 -0.4209 32 1 2.4367 -4.3731 -2.6622 33 1 2.6663 -5.7491 -1.5567 34 1 2.3350 -6.6707 -4.0672 35 1 -0.0674 -8.1538 -3.9827 36 1 -0.2958 -6.7779 -5.0884 37 1 0.4746 -8.7154 -6.3710 38 1 1.7682 -7.4934 -6.3289 39 1 2.0160 -9.0159 -7.7503 40 1 3.3761 -10.3880 -9.2744 41 1 4.9318 -12.0655 -8.3671 42 1 3.7853 -10.9905 -4.3987 43 1 1.5012 -2.6181 -2.1933 44 1 -0.2032 -2.8747 -1.6239 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001653387855.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:47 Heat of formation + Delta-G solvation = -121.134018 kcal Electronic energy + Delta-G solvation = -27874.204580 eV Core-core repulsion = 23514.007635 eV Total energy + Delta-G solvation = -4360.196945 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.98070 -41.40305 -41.09919 -40.02665 -38.37609 -36.24331 -35.80627 -34.09119 -32.34452 -31.62853 -30.83856 -29.95796 -27.93545 -26.68988 -25.21714 -24.08944 -23.81386 -22.51448 -21.54953 -20.52837 -19.67284 -19.29391 -18.19548 -17.74115 -17.37107 -17.26618 -17.14359 -17.00861 -16.81788 -16.65241 -16.50419 -16.20845 -15.62963 -15.52549 -15.39782 -14.81667 -14.70440 -14.46003 -13.96250 -13.82888 -13.64601 -13.56247 -13.36914 -13.31711 -13.07436 -12.92347 -12.69003 -12.62992 -12.46118 -12.21408 -12.03017 -11.91960 -11.90070 -11.15702 -10.86997 -10.63149 -10.14039 -10.08658 -9.92369 -9.62528 -9.33406 -8.23419 -6.42224 0.10107 0.27541 1.44943 1.47063 1.55305 1.66151 1.93807 2.10389 2.38896 2.58124 2.96964 3.28047 3.33131 3.62163 3.80665 3.86813 3.98173 4.02329 4.05723 4.07868 4.08872 4.23113 4.28499 4.32623 4.39625 4.41903 4.44363 4.57790 4.63550 4.78841 4.91000 4.99850 5.08640 5.15900 5.21172 5.33696 5.36684 5.40169 5.43052 5.69964 5.75984 5.96030 6.22587 6.29753 6.57694 6.64937 7.30447 7.31140 7.56259 8.81979 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021197 B = 0.001750 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.632776 B =15994.805648 C =16201.878838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.021 3.979 3 Si 0.974 3.026 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.553 4.553 8 H 0.074 0.926 9 C 0.216 3.784 10 O -0.586 6.586 11 C 0.016 3.984 12 N -0.470 5.470 13 C -0.005 4.005 14 C 0.516 3.484 15 O -0.570 6.570 16 N -0.718 5.718 17 C 0.120 3.880 18 C 0.053 3.947 19 O -0.325 6.325 20 C 0.150 3.850 21 C -0.216 4.216 22 C -0.046 4.046 23 C -0.195 4.195 24 C 0.118 3.882 25 F -0.146 7.146 26 C -0.210 4.210 27 C -0.005 4.005 28 H 0.274 0.726 29 H 0.383 0.617 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.124 0.876 34 H 0.415 0.585 35 H 0.061 0.939 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.097 0.903 39 H 0.161 0.839 40 H 0.168 0.832 41 H 0.153 0.847 42 H 0.135 0.865 43 H 0.069 0.931 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.290 -19.533 -21.240 30.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.178 4.178 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.591 4.591 8 H 0.092 0.908 9 C 0.175 3.825 10 O -0.398 6.398 11 C -0.112 4.112 12 N -0.193 5.193 13 C -0.136 4.136 14 C 0.302 3.698 15 O -0.447 6.447 16 N -0.373 5.373 17 C -0.003 4.003 18 C -0.022 4.022 19 O -0.239 6.239 20 C 0.104 3.896 21 C -0.235 4.235 22 C -0.063 4.063 23 C -0.214 4.214 24 C 0.099 3.901 25 F -0.125 7.125 26 C -0.229 4.229 27 C -0.135 4.135 28 H 0.084 0.916 29 H 0.237 0.763 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.142 0.858 34 H 0.252 0.748 35 H 0.079 0.921 36 H 0.111 0.889 37 H 0.125 0.875 38 H 0.115 0.885 39 H 0.178 0.822 40 H 0.186 0.814 41 H 0.171 0.829 42 H 0.153 0.847 43 H 0.087 0.913 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 8.040 -20.523 -20.477 30.086 hybrid contribution 0.883 1.585 -0.226 1.829 sum 8.923 -18.938 -20.703 29.443 Atomic orbital electron populations 1.69403 1.07524 1.28747 1.50775 1.25932 0.95775 1.03167 0.92958 0.85372 0.78154 0.77600 0.79062 1.19000 1.20973 1.19558 1.21816 0.94064 0.91173 1.52082 0.90751 1.19812 0.85470 0.92270 0.84996 1.86023 1.45786 1.47788 1.60227 1.24044 0.95764 0.94417 0.97000 1.68722 1.27185 1.13122 1.10239 1.22733 0.95829 0.99517 0.95562 1.20812 0.89143 0.79485 0.80327 1.90695 1.19592 1.65333 1.69105 1.45807 1.12293 1.46981 1.32258 1.21448 0.92023 0.93829 0.93013 1.23274 0.93046 0.90503 0.95348 1.86113 1.53097 1.49212 1.35488 1.18704 0.90715 0.90565 0.89608 1.21690 1.05328 1.05225 0.91239 1.21212 0.91787 0.91696 1.01640 1.21374 1.04009 1.03336 0.92677 1.17557 0.90716 0.89164 0.92698 1.91493 1.68266 1.64108 1.88605 1.20370 1.01273 1.00076 1.01196 1.24548 0.99182 0.88678 1.01079 0.91648 0.76261 0.91008 0.88870 0.89057 0.85839 0.74789 0.92052 0.88866 0.87482 0.88515 0.82157 0.81404 0.82942 0.84683 0.91322 0.94676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.96 11.02 21.45 0.24 -50.73 16 2 C 0.02 1.10 5.40 84.65 0.46 1.56 16 3 Si 0.97 41.07 29.54 68.60 2.03 43.10 16 4 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 6 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.55 -29.20 8.69 25.60 0.22 -28.97 16 8 H 0.07 3.70 7.81 -2.91 -0.02 3.67 16 9 C 0.22 11.23 1.57 -11.15 -0.02 11.22 16 10 O -0.59 -34.05 13.54 -148.98 -2.02 -36.06 16 11 C 0.02 0.69 7.09 83.58 0.59 1.29 16 12 N -0.47 -20.36 5.82 -932.08 -5.43 -25.78 16 13 C 0.00 -0.15 5.30 85.56 0.45 0.30 16 14 C 0.52 16.58 7.90 87.66 0.69 17.27 16 15 O -0.57 -24.62 16.43 -3.01 -0.05 -24.67 16 16 N -0.72 -15.14 5.50 -463.06 -2.55 -17.69 16 17 C 0.12 2.10 6.06 86.38 0.52 2.62 16 18 C 0.05 0.52 4.87 71.98 0.35 0.87 16 19 O -0.33 -4.99 10.08 -92.44 -0.93 -5.92 16 20 C 0.15 2.16 6.68 22.50 0.15 2.31 16 21 C -0.22 -1.97 9.04 22.37 0.20 -1.77 16 22 C -0.05 -0.35 10.04 22.25 0.22 -0.12 16 23 C -0.20 -2.15 10.02 22.33 0.22 -1.93 16 24 C 0.12 1.90 7.30 22.36 0.16 2.06 16 25 F -0.15 -2.73 17.27 44.97 0.78 -1.95 16 26 C -0.21 -3.54 9.97 22.41 0.22 -3.32 16 27 C -0.01 -0.25 7.13 83.62 0.60 0.34 16 28 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 29 H 0.38 22.73 6.33 -74.06 -0.47 22.26 16 30 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 31 H 0.09 3.39 7.87 -2.39 -0.02 3.37 16 32 H 0.09 2.46 7.30 -2.39 -0.02 2.45 16 33 H 0.12 3.09 8.08 -2.39 -0.02 3.07 16 34 H 0.42 6.24 8.47 -92.71 -0.79 5.46 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.11 0.57 7.65 -2.39 -0.02 0.55 16 38 H 0.10 0.55 7.67 -2.38 -0.02 0.53 16 39 H 0.16 0.59 6.30 -2.91 -0.02 0.58 16 40 H 0.17 0.19 8.06 -2.91 -0.02 0.17 16 41 H 0.15 1.10 8.06 -2.91 -0.02 1.07 16 42 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 43 H 0.07 3.08 7.37 -2.39 -0.02 3.06 16 44 H 0.03 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -74.57 377.49 -3.08 -77.65 By element: Atomic # 1 Polarization: 38.52 SS G_CDS: -0.20 Total: 38.32 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 5.06 Total: 3.73 kcal Atomic # 7 Polarization: -86.46 SS G_CDS: -7.74 Total: -94.20 kcal Atomic # 8 Polarization: -63.65 SS G_CDS: -3.00 Total: -66.65 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.78 Total: -1.95 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -74.57 -3.08 -77.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653387855.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.480 kcal (2) G-P(sol) polarization free energy of solvation -74.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds