Wall clock time and date at job start Tue Mar 31 2020 20:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86799 * 120.00053 * 2 1 4 4 H 1.48500 * 109.47280 * 240.00190 * 3 2 1 5 5 H 1.48499 * 109.46832 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47092 * 119.99948 * 3 2 1 7 7 C 1.38950 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99777 * 0.02562 * 7 2 1 10 10 C 1.34783 * 119.99725 * 180.02562 * 9 7 2 11 11 O 1.21283 * 120.00033 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99693 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.46946 * 173.80233 * 12 10 9 14 14 C 1.47019 * 111.00219 * 170.00315 * 13 12 10 15 15 C 1.53089 * 109.26071 * 182.39231 * 14 13 12 16 16 O 1.43014 * 109.25941 * 303.15359 * 15 14 13 17 17 C 1.43016 * 113.74093 * 58.67020 * 16 15 14 18 18 H 1.08995 * 109.50958 * 61.26344 * 17 16 15 19 19 C 1.52994 * 109.54475 * 181.37498 * 17 16 15 20 20 N 1.46502 * 109.47368 * 299.80227 * 19 17 16 21 21 C 1.34769 * 120.00303 * 180.02562 * 20 19 17 22 22 O 1.21681 * 120.00190 * 359.97438 * 21 20 19 23 23 C 1.46725 * 120.00087 * 180.02562 * 21 20 19 24 24 C 1.36341 * 126.64385 * 179.70945 * 23 21 20 25 25 N 1.33693 * 107.45195 * 179.89828 * 24 23 21 26 26 C 1.30621 * 108.99428 * 0.36936 * 25 24 23 27 27 O 1.33660 * 109.15177 * 359.77131 * 26 25 24 28 28 C 1.47010 * 111.00059 * 293.63689 * 13 12 10 29 29 H 0.97001 * 120.00141 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00208 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.47646 * 53.80477 * 12 10 9 32 32 H 1.09000 * 109.47235 * 293.80084 * 12 10 9 33 33 H 1.09000 * 109.50535 * 302.32909 * 14 13 12 34 34 H 1.09004 * 109.50574 * 62.45561 * 14 13 12 35 35 H 1.09001 * 109.51300 * 183.21812 * 15 14 13 36 36 H 1.09008 * 109.50810 * 63.08442 * 15 14 13 37 37 H 1.09000 * 109.47512 * 59.80332 * 19 17 16 38 38 H 1.08998 * 109.47515 * 179.80338 * 19 17 16 39 39 H 0.97000 * 119.99474 * 0.02562 * 20 19 17 40 40 H 1.08002 * 126.27160 * 0.02562 * 24 23 21 41 41 H 1.08004 * 125.41753 * 179.74530 * 26 25 24 42 42 H 1.09000 * 109.50877 * 297.54492 * 28 13 12 43 43 H 1.09005 * 109.50401 * 57.67716 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0016 10 6 1.9973 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0011 12 6 1.2437 -4.8629 -0.0022 13 7 2.1913 -5.9754 -0.1516 14 6 1.5283 -7.2670 0.0797 15 6 2.5618 -8.3914 -0.0266 16 8 3.1957 -8.3299 -1.3071 17 6 3.8520 -7.0858 -1.5655 18 1 4.6385 -6.9290 -0.8274 19 6 4.4648 -7.1118 -2.9672 20 7 5.4411 -8.2006 -3.0532 21 6 6.1114 -8.4155 -4.2025 22 8 5.9053 -7.7054 -5.1689 23 6 7.0888 -9.5063 -4.2889 24 6 7.8344 -9.8466 -5.3785 25 7 8.5954 -10.8903 -5.0336 26 6 8.3447 -11.2072 -3.7915 27 8 7.4207 -10.3734 -3.3041 28 6 2.8315 -5.9481 -1.4747 29 1 -0.4850 0.8400 -0.0004 30 1 0.3533 -2.3906 -0.0016 31 1 0.5368 -4.8740 -0.8318 32 1 0.7025 -4.9704 0.9378 33 1 1.0833 -7.2747 1.0747 34 1 0.7501 -7.4159 -0.6689 35 1 2.0647 -9.3548 0.0875 36 1 3.3108 -8.2726 0.7563 37 1 3.6781 -7.2701 -3.7048 38 1 4.9617 -6.1619 -3.1642 39 1 5.6052 -8.7669 -2.2830 40 1 7.8153 -9.3606 -6.3428 41 1 8.8098 -12.0146 -3.2454 42 1 2.0742 -6.0759 -2.2482 43 1 3.3379 -4.9930 -1.6144 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666713519.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:55 Heat of formation + Delta-G solvation = -74.408900 kcal Electronic energy + Delta-G solvation = -28655.635762 eV Core-core repulsion = 24317.384932 eV Total energy + Delta-G solvation = -4338.250830 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.81535 -40.15869 -39.44542 -38.09624 -35.73671 -35.35076 -34.86649 -33.85753 -31.99169 -31.28589 -30.72426 -29.17468 -27.05209 -25.39453 -24.15292 -23.90362 -23.11407 -22.29766 -21.13038 -20.39901 -19.26909 -18.88665 -17.91493 -17.26857 -17.23742 -16.75263 -16.38893 -16.26130 -15.81502 -15.21384 -15.05749 -14.87223 -14.70829 -14.69754 -14.24547 -14.15127 -13.79502 -13.70036 -13.42178 -13.38159 -12.90614 -12.39290 -12.01260 -11.92890 -11.77552 -11.55249 -11.34980 -11.30037 -11.24842 -10.99305 -10.69662 -10.53010 -10.46981 -10.25214 -9.77010 -9.63956 -9.50934 -9.30868 -8.53416 -8.06701 -7.98054 -6.45497 -3.86605 0.44463 2.04241 2.04778 2.77940 2.82060 3.17573 3.23912 3.27890 3.52844 3.72759 3.80453 3.84719 4.17927 4.45530 4.53724 4.67595 4.84871 4.95153 5.00271 5.06918 5.09025 5.16087 5.19585 5.23788 5.30588 5.43928 5.51561 5.66177 5.72115 5.74475 5.76952 5.80357 5.96876 6.03337 6.12315 6.20751 6.95840 6.97696 7.05033 7.17866 7.20518 7.51336 7.71965 8.01442 8.56722 9.13669 9.49396 10.00535 10.71953 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015788 B = 0.002172 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.093433 B =12887.647969 C =14192.540715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.562 5.562 10 C 0.441 3.559 11 O -0.578 6.578 12 C 0.047 3.953 13 N -0.512 5.512 14 C 0.015 3.985 15 C 0.069 3.931 16 O -0.386 6.386 17 C 0.085 3.915 18 H 0.079 0.921 19 C 0.129 3.871 20 N -0.706 5.706 21 C 0.606 3.394 22 O -0.515 6.515 23 C -0.105 4.105 24 C 0.051 3.949 25 N -0.495 5.495 26 C 0.199 3.801 27 O -0.191 6.191 28 C 0.028 3.972 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.040 0.960 35 H 0.097 0.903 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.410 0.590 40 H 0.198 0.802 41 H 0.257 0.743 42 H 0.038 0.962 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.484 -22.290 -3.167 23.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.226 3.774 11 O -0.463 6.463 12 C -0.085 4.085 13 N -0.237 5.237 14 C -0.114 4.114 15 C -0.008 4.008 16 O -0.305 6.305 17 C 0.027 3.973 18 H 0.097 0.903 19 C 0.005 3.995 20 N -0.357 5.357 21 C 0.391 3.609 22 O -0.392 6.392 23 C -0.160 4.160 24 C -0.092 4.092 25 N -0.223 5.223 26 C -0.026 4.026 27 O -0.076 6.076 28 C -0.101 4.101 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.067 0.933 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.059 0.941 35 H 0.115 0.885 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.112 0.888 39 H 0.245 0.755 40 H 0.215 0.785 41 H 0.272 0.728 42 H 0.056 0.944 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 8.754 -21.994 -3.923 23.995 hybrid contribution -1.349 0.944 0.540 1.732 sum 7.405 -21.050 -3.383 22.570 Atomic orbital electron populations 1.69603 1.05945 1.28337 1.50321 1.25273 0.95644 0.99771 0.97217 0.85913 0.78773 0.80414 0.79105 1.19861 1.20969 1.19879 1.19642 0.93330 0.82158 1.47823 0.87924 1.41876 1.09212 1.04599 1.64171 1.19691 0.88418 0.84470 0.84783 1.90494 1.13602 1.86906 1.55271 1.21885 0.93601 0.91062 1.01911 1.61758 1.31080 1.01145 1.29724 1.22830 0.96336 0.90195 1.02020 1.22625 0.94824 0.98018 0.85363 1.87931 1.71553 1.35074 1.35931 1.22362 0.94882 0.84246 0.95827 0.90340 1.21501 0.91242 0.90491 0.96253 1.45741 1.41148 1.34654 1.14125 1.16319 0.79372 0.81569 0.83688 1.90929 1.65336 1.46397 1.36554 1.23240 1.05880 0.97729 0.89163 1.23637 0.92173 0.93453 0.99942 1.70471 1.24591 1.14410 1.12857 1.28446 0.88618 0.95005 0.90517 1.84511 1.47355 1.35754 1.39996 1.22749 0.97110 1.00800 0.89423 0.91773 0.77482 0.93312 0.89039 0.89592 0.94130 0.88515 0.92122 0.90059 0.88784 0.75509 0.78522 0.72761 0.94369 0.86966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.15 13.05 55.50 0.72 -23.43 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.30 -8.18 9.68 -14.93 -0.14 -8.33 16 8 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 9 N -0.56 -13.85 5.29 -10.96 -0.06 -13.91 16 10 C 0.44 10.00 7.35 -10.98 -0.08 9.92 16 11 O -0.58 -14.92 14.25 5.55 0.08 -14.84 16 12 C 0.05 0.79 5.45 -4.98 -0.03 0.77 16 13 N -0.51 -8.00 4.42 -235.75 -1.04 -9.04 16 14 C 0.01 0.17 5.64 -3.71 -0.02 0.15 16 15 C 0.07 0.71 7.01 37.20 0.26 0.97 16 16 O -0.39 -4.57 10.23 -35.23 -0.36 -4.93 16 17 C 0.09 1.06 2.89 -26.68 -0.08 0.99 16 18 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 19 C 0.13 1.52 5.37 -4.04 -0.02 1.50 16 20 N -0.71 -7.59 5.45 -61.61 -0.34 -7.92 16 21 C 0.61 7.27 7.79 -12.84 -0.10 7.17 16 22 O -0.51 -7.71 16.89 5.21 0.09 -7.62 16 23 C -0.10 -1.07 7.18 -36.84 -0.26 -1.33 16 24 C 0.05 0.50 11.66 -17.42 -0.20 0.29 16 25 N -0.50 -4.54 11.26 -14.67 -0.17 -4.71 16 26 C 0.20 1.23 13.21 52.25 0.69 1.92 16 27 O -0.19 -1.56 10.57 4.45 0.05 -1.51 16 28 C 0.03 0.42 4.58 -3.71 -0.02 0.40 16 29 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 31 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 32 H 0.09 1.39 8.04 -51.93 -0.42 0.98 16 33 H 0.09 0.89 8.09 -51.93 -0.42 0.47 16 34 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.41 3.77 8.15 -40.82 -0.33 3.43 16 40 H 0.20 1.66 8.06 -52.49 -0.42 1.23 16 41 H 0.26 0.18 8.06 -52.48 -0.42 -0.24 16 42 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.11 2.05 6.10 -51.93 -0.32 1.73 16 LS Contribution 370.56 15.07 5.58 5.58 Total: -1.00 -34.00 370.56 -6.11 -40.11 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -5.55 Total: 11.50 kcal Atomic # 6 Polarization: 15.03 SS G_CDS: -0.10 Total: 14.93 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: -0.88 Total: -59.01 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.15 Total: -28.90 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.00 -6.11 -40.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666713519.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.302 kcal (2) G-P(sol) polarization free energy of solvation -33.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds