Wall clock time and date at job start Tue Mar 31 2020 20:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86799 * 120.00053 * 2 1 4 4 H 1.48500 * 109.47280 * 240.00190 * 3 2 1 5 5 H 1.48499 * 109.46832 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47092 * 119.99948 * 3 2 1 7 7 C 1.38950 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99777 * 0.02562 * 7 2 1 10 10 C 1.34783 * 119.99725 * 180.02562 * 9 7 2 11 11 O 1.21283 * 120.00033 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99693 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.46946 * 173.80233 * 12 10 9 14 14 C 1.47019 * 111.00219 * 170.00315 * 13 12 10 15 15 C 1.53089 * 109.26071 * 182.39231 * 14 13 12 16 16 O 1.43014 * 109.25941 * 303.15359 * 15 14 13 17 17 C 1.43016 * 113.74093 * 58.67020 * 16 15 14 18 18 H 1.08995 * 109.50958 * 61.26344 * 17 16 15 19 19 C 1.52994 * 109.54475 * 181.37498 * 17 16 15 20 20 N 1.46502 * 109.47368 * 299.80227 * 19 17 16 21 21 C 1.34769 * 120.00303 * 180.02562 * 20 19 17 22 22 O 1.21681 * 120.00190 * 359.97438 * 21 20 19 23 23 C 1.46725 * 120.00087 * 180.02562 * 21 20 19 24 24 C 1.36341 * 126.64385 * 179.70945 * 23 21 20 25 25 N 1.33693 * 107.45195 * 179.89828 * 24 23 21 26 26 C 1.30621 * 108.99428 * 0.36936 * 25 24 23 27 27 O 1.33660 * 109.15177 * 359.77131 * 26 25 24 28 28 C 1.47010 * 111.00059 * 293.63689 * 13 12 10 29 29 H 0.97001 * 120.00141 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00208 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.47646 * 53.80477 * 12 10 9 32 32 H 1.09000 * 109.47235 * 293.80084 * 12 10 9 33 33 H 1.09000 * 109.50535 * 302.32909 * 14 13 12 34 34 H 1.09004 * 109.50574 * 62.45561 * 14 13 12 35 35 H 1.09001 * 109.51300 * 183.21812 * 15 14 13 36 36 H 1.09008 * 109.50810 * 63.08442 * 15 14 13 37 37 H 1.09000 * 109.47512 * 59.80332 * 19 17 16 38 38 H 1.08998 * 109.47515 * 179.80338 * 19 17 16 39 39 H 0.97000 * 119.99474 * 0.02562 * 20 19 17 40 40 H 1.08002 * 126.27160 * 0.02562 * 24 23 21 41 41 H 1.08004 * 125.41753 * 179.74530 * 26 25 24 42 42 H 1.09000 * 109.50877 * 297.54492 * 28 13 12 43 43 H 1.09005 * 109.50401 * 57.67716 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0016 10 6 1.9973 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0011 12 6 1.2437 -4.8629 -0.0022 13 7 2.1913 -5.9754 -0.1516 14 6 1.5283 -7.2670 0.0797 15 6 2.5618 -8.3914 -0.0266 16 8 3.1957 -8.3299 -1.3071 17 6 3.8520 -7.0858 -1.5655 18 1 4.6385 -6.9290 -0.8274 19 6 4.4648 -7.1118 -2.9672 20 7 5.4411 -8.2006 -3.0532 21 6 6.1114 -8.4155 -4.2025 22 8 5.9053 -7.7054 -5.1689 23 6 7.0888 -9.5063 -4.2889 24 6 7.8344 -9.8466 -5.3785 25 7 8.5954 -10.8903 -5.0336 26 6 8.3447 -11.2072 -3.7915 27 8 7.4207 -10.3734 -3.3041 28 6 2.8315 -5.9481 -1.4747 29 1 -0.4850 0.8400 -0.0004 30 1 0.3533 -2.3906 -0.0016 31 1 0.5368 -4.8740 -0.8318 32 1 0.7025 -4.9704 0.9378 33 1 1.0833 -7.2747 1.0747 34 1 0.7501 -7.4159 -0.6689 35 1 2.0647 -9.3548 0.0875 36 1 3.3108 -8.2726 0.7563 37 1 3.6781 -7.2701 -3.7048 38 1 4.9617 -6.1619 -3.1642 39 1 5.6052 -8.7669 -2.2830 40 1 7.8153 -9.3606 -6.3428 41 1 8.8098 -12.0146 -3.2454 42 1 2.0742 -6.0759 -2.2482 43 1 3.3379 -4.9930 -1.6144 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666713519.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:54 Heat of formation + Delta-G solvation = -105.451382 kcal Electronic energy + Delta-G solvation = -28656.981865 eV Core-core repulsion = 24317.384932 eV Total energy + Delta-G solvation = -4339.596933 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.45749 -41.21592 -40.55757 -39.71385 -36.86385 -36.27971 -35.84150 -35.64948 -33.28864 -32.92701 -31.47773 -30.41078 -28.21570 -26.94527 -25.34145 -24.94383 -23.78729 -23.28232 -22.01960 -21.43161 -21.00585 -19.89752 -19.67285 -17.98494 -17.94504 -17.87569 -17.58944 -17.35132 -17.04957 -16.58437 -16.37862 -16.01698 -15.86400 -15.75867 -15.45917 -15.29114 -15.15534 -14.79519 -14.62279 -14.46735 -13.98190 -13.87765 -13.48829 -13.22515 -13.04001 -12.84875 -12.59041 -12.43834 -12.39137 -12.26553 -12.13536 -12.04754 -11.68414 -11.49208 -11.42507 -10.80835 -10.51773 -10.25255 -10.10010 -10.00351 -9.33316 -8.46700 -5.95091 -0.26221 1.34656 1.39115 1.39968 1.41318 1.51786 1.92721 1.98871 2.04783 2.27454 2.58781 2.68056 3.20063 3.26387 3.30967 3.65989 3.80279 3.83474 3.86314 3.97395 4.02264 4.21036 4.29543 4.33886 4.42248 4.44730 4.48725 4.56141 4.58297 4.61942 4.73028 4.85617 4.87267 5.00572 5.07661 5.20181 5.40702 5.75876 5.95270 6.05169 6.12585 6.16504 6.51170 6.60103 6.83527 7.12776 7.56360 8.11665 8.70333 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015788 B = 0.002172 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.093433 B =12887.647969 C =14192.540715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.014 4.014 3 Si 0.991 3.009 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.331 4.331 8 H 0.079 0.921 9 N -0.574 5.574 10 C 0.440 3.560 11 O -0.613 6.613 12 C 0.058 3.942 13 N -0.530 5.530 14 C 0.014 3.986 15 C 0.066 3.934 16 O -0.386 6.386 17 C 0.102 3.898 18 H 0.074 0.926 19 C 0.134 3.866 20 N -0.697 5.697 21 C 0.607 3.393 22 O -0.554 6.554 23 C -0.127 4.127 24 C 0.052 3.948 25 N -0.528 5.528 26 C 0.229 3.771 27 O -0.191 6.191 28 C 0.030 3.970 29 H 0.277 0.723 30 H 0.396 0.604 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.105 0.895 34 H 0.047 0.953 35 H 0.131 0.869 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.419 0.581 40 H 0.200 0.800 41 H 0.309 0.691 42 H 0.041 0.959 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.505 -24.489 -2.211 25.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.815 3.185 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.460 4.460 8 H 0.097 0.903 9 N -0.212 5.212 10 C 0.228 3.772 11 O -0.499 6.499 12 C -0.073 4.073 13 N -0.255 5.255 14 C -0.114 4.114 15 C -0.010 4.010 16 O -0.305 6.305 17 C 0.043 3.957 18 H 0.092 0.908 19 C 0.010 3.990 20 N -0.347 5.347 21 C 0.393 3.607 22 O -0.434 6.434 23 C -0.182 4.182 24 C -0.090 4.090 25 N -0.255 5.255 26 C 0.005 3.995 27 O -0.077 6.077 28 C -0.099 4.099 29 H 0.087 0.913 30 H 0.229 0.771 31 H 0.083 0.917 32 H 0.134 0.866 33 H 0.123 0.877 34 H 0.065 0.935 35 H 0.148 0.852 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.256 0.744 40 H 0.217 0.783 41 H 0.324 0.676 42 H 0.059 0.941 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.758 -24.233 -2.945 25.934 hybrid contribution -1.294 1.461 0.291 1.973 sum 7.464 -22.772 -2.654 24.110 Atomic orbital electron populations 1.69665 1.06778 1.29300 1.50376 1.26021 0.96542 1.02379 0.96403 0.85014 0.77774 0.76801 0.78923 1.19822 1.19590 1.19673 1.19601 0.92671 0.83943 1.49816 0.90253 1.41947 1.09310 1.04720 1.65187 1.20735 0.88342 0.85840 0.82324 1.90471 1.15546 1.87770 1.56096 1.21761 0.93268 0.88420 1.03827 1.61734 1.31567 1.02448 1.29764 1.22990 0.96788 0.88300 1.03285 1.22859 0.94606 0.98996 0.84543 1.87941 1.71529 1.34043 1.37011 1.22072 0.93960 0.83846 0.95821 0.90840 1.21334 0.91298 0.90496 0.95859 1.45618 1.40564 1.34266 1.14255 1.16502 0.79352 0.81606 0.83233 1.90899 1.66738 1.48027 1.37773 1.22770 1.06814 0.98619 0.90014 1.23807 0.91738 0.93428 1.00065 1.70518 1.25562 1.14872 1.14597 1.29695 0.86100 0.93968 0.89713 1.84517 1.47970 1.35783 1.39472 1.22625 0.97572 1.00009 0.89700 0.91348 0.77065 0.91683 0.86596 0.87667 0.93465 0.85171 0.91968 0.90481 0.89849 0.74435 0.78273 0.67596 0.94051 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.39 13.05 21.66 0.28 -49.10 16 2 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 3 Si 0.99 42.85 29.55 68.60 2.03 44.88 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 7 C -0.33 -18.56 9.68 84.04 0.81 -17.74 16 8 H 0.08 4.74 7.16 -2.91 -0.02 4.71 16 9 N -0.57 -28.95 5.29 -306.99 -1.62 -30.58 16 10 C 0.44 20.35 7.35 87.65 0.64 20.99 16 11 O -0.61 -32.72 14.25 -3.04 -0.04 -32.76 16 12 C 0.06 1.92 5.45 85.56 0.47 2.39 16 13 N -0.53 -15.98 4.42 -899.78 -3.98 -19.95 16 14 C 0.01 0.29 5.64 86.31 0.49 0.77 16 15 C 0.07 1.17 7.01 72.01 0.50 1.67 16 16 O -0.39 -8.39 10.23 -148.98 -1.52 -9.92 16 17 C 0.10 2.52 2.89 30.63 0.09 2.60 16 18 H 0.07 1.90 8.14 -2.39 -0.02 1.89 16 19 C 0.13 3.25 5.37 86.38 0.46 3.71 16 20 N -0.70 -14.93 5.45 -467.06 -2.54 -17.48 16 21 C 0.61 14.83 7.79 86.46 0.67 15.51 16 22 O -0.55 -17.31 16.89 -4.29 -0.07 -17.39 16 23 C -0.13 -2.53 7.18 24.05 0.17 -2.35 16 24 C 0.05 1.00 11.66 83.97 0.98 1.98 16 25 N -0.53 -8.80 11.26 -315.09 -3.55 -12.34 16 26 C 0.23 2.15 13.21 130.42 1.72 3.88 16 27 O -0.19 -2.75 10.57 -6.99 -0.07 -2.82 16 28 C 0.03 0.92 4.58 86.32 0.40 1.31 16 29 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 30 H 0.40 18.98 7.90 -92.71 -0.73 18.25 16 31 H 0.07 1.96 8.12 -2.39 -0.02 1.94 16 32 H 0.12 3.28 8.04 -2.39 -0.02 3.26 16 33 H 0.11 1.80 8.09 -2.39 -0.02 1.79 16 34 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.42 7.33 8.15 -92.71 -0.76 6.57 16 40 H 0.20 3.47 8.06 -2.91 -0.02 3.45 16 41 H 0.31 -1.07 8.06 -2.91 -0.02 -1.09 16 42 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.07 2.86 6.10 -2.38 -0.01 2.85 16 Total: -1.00 -76.04 370.56 -3.63 -79.67 By element: Atomic # 1 Polarization: 33.76 SS G_CDS: -0.41 Total: 33.34 kcal Atomic # 6 Polarization: 26.57 SS G_CDS: 7.88 Total: 34.45 kcal Atomic # 7 Polarization: -118.04 SS G_CDS: -11.41 Total: -129.45 kcal Atomic # 8 Polarization: -61.18 SS G_CDS: -1.71 Total: -62.89 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -76.04 -3.63 -79.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666713519.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.781 kcal (2) G-P(sol) polarization free energy of solvation -76.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds