Wall clock time and date at job start Tue Mar 31 2020 21:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00426 * 2 1 4 4 C 1.53001 * 109.47617 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46928 * 64.99748 * 4 3 2 6 6 C 1.46501 * 120.00287 * 270.00019 * 5 4 3 7 7 C 1.50705 * 109.47260 * 270.00547 * 6 5 4 8 8 H 1.08005 * 119.99752 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00062 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99899 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00094 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47085 * 90.00322 * 11 9 7 13 13 H 1.48494 * 109.47413 * 210.00138 * 11 9 7 14 14 H 1.48502 * 109.47297 * 330.00473 * 11 9 7 15 15 C 1.34776 * 120.00164 * 90.00480 * 5 4 3 16 16 O 1.21932 * 120.00582 * 179.97438 * 15 5 4 17 17 N 1.33232 * 119.99720 * 0.27045 * 15 5 4 18 18 C 1.34326 * 120.00474 * 235.55024 * 17 15 5 19 19 C 1.41351 * 120.67694 * 190.32859 * 18 17 15 20 20 C 1.50696 * 120.37190 * 359.97438 * 19 18 17 21 21 C 1.35233 * 119.25375 * 179.79257 * 19 18 17 22 22 N 1.35541 * 120.69184 * 0.46892 * 21 19 18 23 23 H 0.96993 * 119.27209 * 179.75480 * 22 21 19 24 24 C 1.35544 * 121.44920 * 359.78033 * 22 21 19 25 25 C 1.35220 * 120.69380 * 359.97438 * 24 22 21 26 26 N 1.48024 * 120.37363 * 179.97438 * 25 24 22 27 27 O 1.21801 * 119.99502 * 59.34520 * 26 25 24 28 28 O 1.21797 * 120.00322 * 239.33998 * 26 25 24 29 29 H 1.08991 * 109.47176 * 59.99841 * 1 2 3 30 30 H 1.09001 * 109.47062 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46467 * 299.99492 * 1 2 3 32 32 H 1.08999 * 109.47435 * 60.00001 * 3 2 1 33 33 H 1.09009 * 109.47182 * 300.00233 * 3 2 1 34 34 H 1.09003 * 109.47001 * 304.99915 * 4 3 2 35 35 H 1.08997 * 109.46986 * 185.00138 * 4 3 2 36 36 H 1.08998 * 109.46746 * 30.00268 * 6 5 4 37 37 H 1.08998 * 109.47162 * 150.00144 * 6 5 4 38 38 H 0.97000 * 119.99832 * 179.97438 * 10 9 7 39 39 H 1.08998 * 109.46869 * 89.99815 * 20 19 18 40 40 H 1.08992 * 109.47323 * 210.00231 * 20 19 18 41 41 H 1.08998 * 109.47037 * 330.00614 * 20 19 18 42 42 H 1.07999 * 119.65144 * 180.21039 * 21 19 18 43 43 H 1.07997 * 119.64807 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.1052 -0.8922 -1.3428 7 6 5.5010 -1.2980 -0.9449 8 1 6.2198 -0.5460 -0.6544 9 6 5.8603 -2.6290 -0.9517 10 7 4.9851 -3.5446 -1.3059 11 14 7.5905 -3.1319 -0.4591 12 1 7.6354 -3.3837 1.0037 13 1 7.9724 -4.3691 -1.1862 14 1 8.5395 -2.0427 -0.8032 15 6 4.2616 1.3336 -2.3218 16 8 4.6284 0.8174 -3.3638 17 7 4.1490 2.6585 -2.2383 18 6 3.3722 3.3229 -3.1097 19 6 3.4081 4.7344 -3.1772 20 6 4.3208 5.5176 -2.2693 21 6 2.6168 5.3737 -4.0683 22 7 1.7892 4.6760 -4.8840 23 1 1.2280 5.1557 -5.5129 24 6 1.7283 3.3226 -4.8396 25 6 2.4979 2.6250 -3.9739 26 7 2.4253 1.1472 -3.9311 27 8 2.6818 0.4958 -4.9279 28 8 2.1092 0.5826 -2.8993 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 3.8515 0.5681 0.8410 35 1 3.9785 2.1764 0.0889 36 1 3.3853 -1.3630 -0.6734 37 1 3.9120 -1.2115 -2.3669 38 1 5.2380 -4.4810 -1.3110 39 1 5.2870 5.6537 -2.7551 40 1 3.8782 6.4917 -2.0615 41 1 4.4576 4.9738 -1.3346 42 1 2.6416 6.4518 -4.1276 43 1 1.0580 2.7960 -5.5028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670515871.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:22 Heat of formation + Delta-G solvation = 29.298253 kcal Electronic energy + Delta-G solvation = -31907.894778 eV Core-core repulsion = 27574.141028 eV Total energy + Delta-G solvation = -4333.753751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.06388 -40.68603 -39.03315 -37.26209 -35.73944 -35.62728 -34.45251 -33.61423 -32.39926 -31.24831 -29.25187 -27.80095 -27.00044 -26.27666 -25.65246 -24.29646 -22.44231 -22.11972 -21.99018 -19.72422 -19.07872 -18.12532 -17.96002 -17.81489 -16.95410 -16.26698 -15.99757 -15.92498 -15.44072 -15.24842 -15.01782 -14.70991 -14.39554 -14.16227 -13.85264 -13.62039 -13.28830 -12.85552 -12.78599 -12.20122 -12.10239 -11.84599 -11.61719 -11.53486 -11.27982 -10.95054 -10.83796 -10.66933 -10.62394 -10.46948 -10.26301 -10.18977 -10.10029 -10.02024 -9.87210 -9.25914 -9.07237 -8.65615 -8.11892 -7.87811 -7.21929 -5.71232 -3.74383 0.30956 0.57396 1.32980 1.58883 2.43543 2.80236 3.49371 3.54498 3.60721 3.63955 3.82477 3.99488 4.28986 4.34292 4.42338 4.47848 4.70614 4.82523 5.02790 5.33410 5.47400 5.55886 5.56868 5.61605 5.67534 5.76816 5.81800 5.88158 5.95699 6.03979 6.07311 6.11103 6.19451 6.39390 6.56479 6.98416 7.49334 7.75211 7.86592 7.93489 8.03327 8.25743 8.29582 8.62588 8.84997 9.25064 9.51165 9.88037 11.36157 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012901 B = 0.004548 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.791425 B = 6155.480564 C = 6626.909245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.361 6.361 3 C 0.057 3.943 4 C 0.119 3.881 5 N -0.551 5.551 6 C 0.263 3.737 7 C -0.522 4.522 8 H 0.051 0.949 9 C 0.061 3.939 10 N -0.892 5.892 11 Si 0.893 3.107 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.642 3.358 16 O -0.590 6.590 17 N -0.571 5.571 18 C 0.304 3.696 19 C -0.120 4.120 20 C -0.091 4.091 21 C 0.095 3.905 22 N -0.576 5.576 23 H 0.432 0.568 24 C 0.204 3.796 25 C -0.157 4.157 26 N 0.043 4.957 27 O -0.132 6.132 28 O -0.123 6.123 29 H 0.031 0.969 30 H 0.081 0.919 31 H 0.028 0.972 32 H 0.040 0.960 33 H 0.041 0.959 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.047 0.953 37 H 0.045 0.955 38 H 0.259 0.741 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.181 0.819 43 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.177 25.392 -5.117 29.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C -0.021 4.021 4 C -0.006 4.006 5 N -0.281 5.281 6 C 0.144 3.856 7 C -0.562 4.562 8 H 0.070 0.930 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.721 3.279 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.202 1.202 15 C 0.343 3.657 16 O -0.470 6.470 17 N -0.303 5.303 18 C 0.132 3.868 19 C -0.127 4.127 20 C -0.149 4.149 21 C -0.031 4.031 22 N -0.182 5.182 23 H 0.270 0.730 24 C 0.069 3.931 25 C -0.250 4.250 26 N 0.567 4.433 27 O -0.353 6.353 28 O -0.341 6.341 29 H 0.050 0.950 30 H 0.100 0.900 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.105 0.895 42 H 0.198 0.802 43 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -13.181 25.384 -4.846 29.009 hybrid contribution 0.210 -0.694 -0.424 0.840 sum -12.971 24.689 -5.270 28.383 Atomic orbital electron populations 1.22595 0.82731 1.02177 0.98400 1.88113 1.18086 1.26746 1.94949 1.22924 0.95313 0.85369 0.98475 1.21408 0.91234 0.98950 0.89021 1.47591 1.62035 1.09276 1.09219 1.19249 0.95870 0.71213 0.99284 1.21568 0.97779 0.92115 1.44691 0.93024 1.24880 0.97042 0.96426 0.95672 1.69971 1.34075 1.00711 1.48402 0.86584 0.85244 0.77890 0.78161 1.20841 1.21259 1.20187 1.17240 0.80210 0.83383 0.84902 1.91111 1.52541 1.74307 1.29084 1.68711 1.26024 1.11079 1.24516 1.18285 0.89460 0.92712 0.86318 1.19317 1.01767 0.90661 1.00993 1.20489 0.97296 0.97894 0.99173 1.21720 0.91602 0.98233 0.91588 1.40802 1.37708 1.04380 1.35317 0.73034 1.21128 0.94807 0.83942 0.93253 1.21206 1.10760 0.83563 1.09509 1.42720 0.98464 1.01093 1.01015 1.94517 1.50592 1.64330 1.25828 1.94695 1.48644 1.71180 1.19550 0.95023 0.90035 0.95376 0.94191 0.94093 0.89660 0.89908 0.93538 0.93707 0.93092 0.90694 0.91449 0.89463 0.80172 0.80198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 11.01 101.05 1.11 1.69 16 2 O -0.36 -7.28 9.50 -35.23 -0.33 -7.62 16 3 C 0.06 1.03 5.62 37.16 0.21 1.24 16 4 C 0.12 2.47 5.79 -4.04 -0.02 2.44 16 5 N -0.55 -14.21 1.45 -181.19 -0.26 -14.48 16 6 C 0.26 8.03 4.34 -5.19 -0.02 8.01 16 7 C -0.52 -16.82 9.39 -34.44 -0.32 -17.15 16 8 H 0.05 1.68 7.81 -52.48 -0.41 1.27 16 9 C 0.06 1.94 5.46 -17.82 -0.10 1.84 16 10 N -0.89 -29.22 13.29 55.43 0.74 -28.48 16 11 Si 0.89 24.10 29.54 -169.99 -5.02 19.07 16 12 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 13 H -0.29 -7.60 7.11 56.52 0.40 -7.19 16 14 H -0.28 -7.49 7.11 56.52 0.40 -7.09 16 15 C 0.64 16.56 4.68 -88.29 -0.41 16.15 16 16 O -0.59 -17.82 13.29 -25.45 -0.34 -18.16 16 17 N -0.57 -11.79 8.25 -14.59 -0.12 -11.91 16 18 C 0.30 4.84 6.51 -84.41 -0.55 4.29 16 19 C -0.12 -1.16 5.89 -104.51 -0.62 -1.77 16 20 C -0.09 -0.74 9.81 36.00 0.35 -0.39 16 21 C 0.10 0.41 10.82 -16.98 -0.18 0.23 16 22 N -0.58 -1.95 5.24 -13.05 -0.07 -2.01 16 23 H 0.43 -0.64 8.90 -40.82 -0.36 -1.00 16 24 C 0.20 1.66 11.05 -16.99 -0.19 1.47 16 25 C -0.16 -2.42 5.95 -79.83 -0.47 -2.90 16 26 N 0.04 0.91 2.23 34.02 0.08 0.99 16 27 O -0.13 -3.06 18.01 -36.36 -0.65 -3.71 16 28 O -0.12 -2.91 12.64 -36.08 -0.46 -3.36 16 29 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.04 0.75 7.09 -51.92 -0.37 0.38 16 34 H 0.09 1.82 8.07 -51.93 -0.42 1.40 16 35 H 0.08 1.55 7.30 -51.93 -0.38 1.17 16 36 H 0.05 1.46 7.11 -51.93 -0.37 1.09 16 37 H 0.04 1.56 7.15 -51.93 -0.37 1.19 16 38 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 41 H 0.09 0.93 7.57 -51.93 -0.39 0.54 16 42 H 0.18 -0.09 8.06 -52.49 -0.42 -0.52 16 43 H 0.18 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 365.28 15.07 5.50 5.50 Total: -1.00 -47.88 365.28 -7.74 -55.62 By element: Atomic # 1 Polarization: -1.03 SS G_CDS: -5.59 Total: -6.62 kcal Atomic # 6 Polarization: 16.38 SS G_CDS: -1.22 Total: 15.16 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: 0.36 Total: -55.89 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -1.78 Total: -32.86 kcal Atomic # 14 Polarization: 24.10 SS G_CDS: -5.02 Total: 19.07 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -47.88 -7.74 -55.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670515871.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.921 kcal (2) G-P(sol) polarization free energy of solvation -47.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds