Wall clock time and date at job start Tue Mar 31 2020 21:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00426 * 2 1 4 4 C 1.53001 * 109.47617 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.46928 * 64.99748 * 4 3 2 6 6 C 1.46501 * 120.00287 * 270.00019 * 5 4 3 7 7 C 1.50705 * 109.47260 * 270.00547 * 6 5 4 8 8 H 1.08005 * 119.99752 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00062 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99899 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00094 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47085 * 90.00322 * 11 9 7 13 13 H 1.48494 * 109.47413 * 210.00138 * 11 9 7 14 14 H 1.48502 * 109.47297 * 330.00473 * 11 9 7 15 15 C 1.34776 * 120.00164 * 90.00480 * 5 4 3 16 16 O 1.21932 * 120.00582 * 179.97438 * 15 5 4 17 17 N 1.33232 * 119.99720 * 0.27045 * 15 5 4 18 18 C 1.34326 * 120.00474 * 235.55024 * 17 15 5 19 19 C 1.41351 * 120.67694 * 190.32859 * 18 17 15 20 20 C 1.50696 * 120.37190 * 359.97438 * 19 18 17 21 21 C 1.35233 * 119.25375 * 179.79257 * 19 18 17 22 22 N 1.35541 * 120.69184 * 0.46892 * 21 19 18 23 23 H 0.96993 * 119.27209 * 179.75480 * 22 21 19 24 24 C 1.35544 * 121.44920 * 359.78033 * 22 21 19 25 25 C 1.35220 * 120.69380 * 359.97438 * 24 22 21 26 26 N 1.48024 * 120.37363 * 179.97438 * 25 24 22 27 27 O 1.21801 * 119.99502 * 59.34520 * 26 25 24 28 28 O 1.21797 * 120.00322 * 239.33998 * 26 25 24 29 29 H 1.08991 * 109.47176 * 59.99841 * 1 2 3 30 30 H 1.09001 * 109.47062 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46467 * 299.99492 * 1 2 3 32 32 H 1.08999 * 109.47435 * 60.00001 * 3 2 1 33 33 H 1.09009 * 109.47182 * 300.00233 * 3 2 1 34 34 H 1.09003 * 109.47001 * 304.99915 * 4 3 2 35 35 H 1.08997 * 109.46986 * 185.00138 * 4 3 2 36 36 H 1.08998 * 109.46746 * 30.00268 * 6 5 4 37 37 H 1.08998 * 109.47162 * 150.00144 * 6 5 4 38 38 H 0.97000 * 119.99832 * 179.97438 * 10 9 7 39 39 H 1.08998 * 109.46869 * 89.99815 * 20 19 18 40 40 H 1.08992 * 109.47323 * 210.00231 * 20 19 18 41 41 H 1.08998 * 109.47037 * 330.00614 * 20 19 18 42 42 H 1.07999 * 119.65144 * 180.21039 * 21 19 18 43 43 H 1.07997 * 119.64807 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.1052 -0.8922 -1.3428 7 6 5.5010 -1.2980 -0.9449 8 1 6.2198 -0.5460 -0.6544 9 6 5.8603 -2.6290 -0.9517 10 7 4.9851 -3.5446 -1.3059 11 14 7.5905 -3.1319 -0.4591 12 1 7.6354 -3.3837 1.0037 13 1 7.9724 -4.3691 -1.1862 14 1 8.5395 -2.0427 -0.8032 15 6 4.2616 1.3336 -2.3218 16 8 4.6284 0.8174 -3.3638 17 7 4.1490 2.6585 -2.2383 18 6 3.3722 3.3229 -3.1097 19 6 3.4081 4.7344 -3.1772 20 6 4.3208 5.5176 -2.2693 21 6 2.6168 5.3737 -4.0683 22 7 1.7892 4.6760 -4.8840 23 1 1.2280 5.1557 -5.5129 24 6 1.7283 3.3226 -4.8396 25 6 2.4979 2.6250 -3.9739 26 7 2.4253 1.1472 -3.9311 27 8 2.6818 0.4958 -4.9279 28 8 2.1092 0.5826 -2.8993 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8464 -0.8900 34 1 3.8515 0.5681 0.8410 35 1 3.9785 2.1764 0.0889 36 1 3.3853 -1.3630 -0.6734 37 1 3.9120 -1.2115 -2.3669 38 1 5.2380 -4.4810 -1.3110 39 1 5.2870 5.6537 -2.7551 40 1 3.8782 6.4917 -2.0615 41 1 4.4576 4.9738 -1.3346 42 1 2.6416 6.4518 -4.1276 43 1 1.0580 2.7960 -5.5028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670515871.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:21 Heat of formation + Delta-G solvation = -10.647216 kcal Electronic energy + Delta-G solvation = -31909.626944 eV Core-core repulsion = 27574.141028 eV Total energy + Delta-G solvation = -4335.485916 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.33994 -41.72952 -40.68907 -38.72601 -37.28582 -36.91593 -36.21320 -34.77168 -34.48441 -32.50601 -31.01854 -29.00402 -28.45612 -27.67684 -27.04115 -25.74243 -24.26748 -23.64542 -23.18685 -20.86050 -20.32772 -19.49990 -19.25642 -18.92167 -18.51550 -18.41056 -17.68995 -17.23287 -16.92049 -16.69988 -16.46970 -15.94984 -15.85180 -15.66410 -15.23188 -14.79282 -14.36775 -14.07930 -13.90479 -13.62766 -13.56608 -13.40110 -13.07435 -12.92368 -12.85078 -12.75857 -12.64407 -12.46138 -12.39604 -12.20239 -12.04733 -11.95255 -11.88621 -11.71916 -11.58727 -10.94556 -10.60085 -10.46031 -10.35731 -9.31180 -8.89485 -8.14736 -6.32468 -0.77786 -0.36642 -0.04137 0.49684 1.30296 1.36626 1.46933 1.67036 1.74110 2.17406 2.35953 2.60619 3.02844 3.08435 3.10913 3.34589 3.49792 3.64508 3.92075 4.20658 4.25026 4.35858 4.43578 4.52851 4.59293 4.59681 4.62257 4.77161 4.86424 4.95200 4.97017 5.03766 5.27811 5.32205 5.37693 5.47283 5.54286 5.67895 5.94766 5.98343 6.15590 6.41802 6.49231 6.55236 6.76208 7.00008 7.32786 7.76955 8.91141 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012901 B = 0.004548 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.791425 B = 6155.480564 C = 6626.909245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.406 6.406 3 C 0.072 3.928 4 C 0.118 3.882 5 N -0.565 5.565 6 C 0.299 3.701 7 C -0.551 4.551 8 H 0.039 0.961 9 C 0.006 3.994 10 N -0.926 5.926 11 Si 0.974 3.026 12 H -0.257 1.257 13 H -0.273 1.273 14 H -0.279 1.279 15 C 0.652 3.348 16 O -0.662 6.662 17 N -0.636 5.636 18 C 0.309 3.691 19 C -0.160 4.160 20 C -0.086 4.086 21 C 0.165 3.835 22 N -0.523 5.523 23 H 0.468 0.532 24 C 0.258 3.742 25 C -0.221 4.221 26 N 0.053 4.947 27 O -0.186 6.186 28 O -0.168 6.168 29 H 0.036 0.964 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.037 0.963 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.023 0.977 37 H -0.016 1.016 38 H 0.267 0.733 39 H 0.067 0.933 40 H 0.118 0.882 41 H 0.050 0.950 42 H 0.260 0.740 43 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.005 31.299 -6.204 35.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.325 6.325 3 C -0.006 4.006 4 C -0.005 4.005 5 N -0.294 5.294 6 C 0.177 3.823 7 C -0.590 4.590 8 H 0.057 0.943 9 C -0.193 4.193 10 N -0.565 5.565 11 Si 0.797 3.203 12 H -0.182 1.182 13 H -0.198 1.198 14 H -0.204 1.204 15 C 0.354 3.646 16 O -0.548 6.548 17 N -0.375 5.375 18 C 0.147 3.853 19 C -0.168 4.168 20 C -0.143 4.143 21 C 0.036 3.964 22 N -0.128 5.128 23 H 0.315 0.685 24 C 0.117 3.883 25 C -0.316 4.316 26 N 0.568 4.432 27 O -0.400 6.400 28 O -0.382 6.382 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.119 0.881 36 H 0.041 0.959 37 H 0.002 0.998 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.137 0.863 41 H 0.069 0.931 42 H 0.276 0.724 43 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -15.118 31.400 -5.983 35.360 hybrid contribution 0.493 -2.040 -0.406 2.138 sum -14.625 29.360 -6.389 33.418 Atomic orbital electron populations 1.22754 0.80373 1.02811 1.00128 1.88053 1.20896 1.28297 1.95299 1.22782 0.92952 0.84873 0.99989 1.21576 0.93755 0.98892 0.86318 1.47375 1.63144 1.07392 1.11474 1.18364 0.94507 0.74834 0.94590 1.21799 0.98448 0.92730 1.45980 0.94254 1.25927 1.02324 0.96028 0.94979 1.70118 1.36607 1.01294 1.48495 0.85354 0.78407 0.77448 0.79103 1.18193 1.19815 1.20449 1.17594 0.78502 0.85201 0.83277 1.91001 1.55769 1.76406 1.31576 1.68532 1.31946 1.06837 1.30155 1.19275 0.87014 0.95313 0.83698 1.19622 1.05166 0.87523 1.04446 1.20478 0.97297 0.99422 0.97125 1.22858 0.86134 1.00928 0.86451 1.41291 1.35401 1.02672 1.33481 0.68544 1.21605 0.91422 0.85598 0.89634 1.21305 1.15896 0.79682 1.14688 1.43330 0.96408 1.03706 0.99727 1.94449 1.52154 1.67069 1.26367 1.94656 1.49907 1.73660 1.19962 0.94573 0.90125 0.92068 0.90060 0.94499 0.91423 0.88110 0.95913 0.99824 0.92429 0.91458 0.86341 0.93086 0.72378 0.76373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.11 11.01 113.37 1.25 2.36 16 2 O -0.41 -17.58 9.50 -148.98 -1.42 -18.99 16 3 C 0.07 2.70 5.62 71.98 0.40 3.11 16 4 C 0.12 5.35 5.79 86.38 0.50 5.85 16 5 N -0.56 -32.31 1.45 -845.29 -1.23 -33.53 16 6 C 0.30 20.35 4.34 85.63 0.37 20.73 16 7 C -0.55 -38.55 9.39 25.60 0.24 -38.31 16 8 H 0.04 2.76 7.81 -2.91 -0.02 2.74 16 9 C 0.01 0.40 5.46 84.65 0.46 0.86 16 10 N -0.93 -64.34 13.29 21.45 0.28 -64.06 16 11 Si 0.97 51.85 29.54 68.60 2.03 53.87 16 12 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 13 H -0.27 -13.86 7.11 99.48 0.71 -13.16 16 14 H -0.28 -14.89 7.11 99.48 0.71 -14.18 16 15 C 0.65 37.11 4.68 179.53 0.84 37.95 16 16 O -0.66 -44.50 13.29 24.00 0.32 -44.18 16 17 N -0.64 -28.19 8.25 -319.05 -2.63 -30.82 16 18 C 0.31 9.81 6.51 40.30 0.26 10.07 16 19 C -0.16 -2.41 5.89 -19.79 -0.12 -2.53 16 20 C -0.09 -1.11 9.81 71.23 0.70 -0.41 16 21 C 0.17 -0.05 10.82 83.43 0.90 0.85 16 22 N -0.52 1.01 5.24 -195.20 -1.02 -0.01 16 23 H 0.47 -6.42 8.90 -92.71 -0.82 -7.25 16 24 C 0.26 2.96 11.05 83.42 0.92 3.88 16 25 C -0.22 -6.78 5.95 36.45 0.22 -6.57 16 26 N 0.05 2.45 2.23 -46.29 -0.10 2.35 16 27 O -0.19 -9.52 18.01 25.48 0.46 -9.06 16 28 O -0.17 -8.81 12.64 25.22 0.32 -8.49 16 29 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.08 2.46 8.14 -2.39 -0.02 2.45 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.04 1.42 7.09 -2.38 -0.02 1.40 16 34 H 0.07 3.18 8.07 -2.39 -0.02 3.16 16 35 H 0.10 4.09 7.30 -2.39 -0.02 4.07 16 36 H 0.02 1.61 7.11 -2.39 -0.02 1.59 16 37 H -0.02 -1.29 7.15 -2.39 -0.02 -1.31 16 38 H 0.27 17.12 8.31 -92.71 -0.77 16.35 16 39 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.12 0.25 8.09 -2.39 -0.02 0.23 16 41 H 0.05 1.07 7.57 -2.39 -0.02 1.05 16 42 H 0.26 -3.64 8.06 -2.91 -0.02 -3.66 16 43 H 0.22 1.04 8.06 -2.91 -0.02 1.02 16 Total: -1.00 -130.93 365.28 4.19 -126.74 By element: Atomic # 1 Polarization: -11.90 SS G_CDS: 0.23 Total: -11.67 kcal Atomic # 6 Polarization: 30.90 SS G_CDS: 6.95 Total: 37.85 kcal Atomic # 7 Polarization: -121.38 SS G_CDS: -4.70 Total: -126.08 kcal Atomic # 8 Polarization: -80.40 SS G_CDS: -0.32 Total: -80.72 kcal Atomic # 14 Polarization: 51.85 SS G_CDS: 2.03 Total: 53.87 kcal Total: -130.93 4.19 -126.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670515871.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.093 kcal (2) G-P(sol) polarization free energy of solvation -130.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -126.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds