Wall clock time and date at job start Tue Mar 31 2020 20:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99733 * 2 1 4 4 H 1.48503 * 109.47050 * 270.00136 * 3 2 1 5 5 H 1.48501 * 109.47046 * 30.00173 * 3 2 1 6 6 H 1.48498 * 109.47264 * 150.00545 * 3 2 1 7 7 C 1.38807 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00216 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99949 * 359.97438 * 7 2 1 10 10 C 1.47559 * 125.67428 * 0.04915 * 9 7 2 11 11 C 1.55191 * 105.00795 * 203.81733 * 10 9 7 12 12 C 1.53646 * 101.41198 * 324.51946 * 11 10 9 13 13 C 1.53093 * 111.77681 * 155.68439 * 12 11 10 14 14 C 1.54352 * 104.72526 * 100.54324 * 13 12 11 15 15 N 1.47612 * 107.05508 * 357.72257 * 14 13 12 16 16 C 1.34772 * 126.91710 * 205.03496 * 15 14 13 17 17 O 1.21285 * 119.99943 * 179.97438 * 16 15 14 18 18 C 1.50698 * 120.00452 * 359.97438 * 16 15 14 19 19 C 1.52996 * 109.47452 * 179.97438 * 18 16 15 20 20 F 1.39903 * 109.46778 * 299.99633 * 19 18 16 21 21 F 1.39900 * 109.47271 * 59.99649 * 19 18 16 22 22 C 1.53001 * 109.47292 * 179.97438 * 19 18 16 23 23 F 1.39897 * 109.47040 * 179.97438 * 22 19 18 24 24 F 1.39897 * 109.46812 * 299.99767 * 22 19 18 25 25 C 1.48404 * 106.15899 * 25.00064 * 15 14 13 26 26 C 1.47414 * 125.67407 * 180.02562 * 9 7 2 27 27 H 0.96993 * 120.00075 * 359.97438 * 1 2 3 28 28 H 1.08997 * 110.33533 * 322.69774 * 10 9 7 29 29 H 1.09002 * 110.33807 * 84.83163 * 10 9 7 30 30 H 1.09003 * 111.03727 * 206.48784 * 11 10 9 31 31 H 1.08994 * 111.03666 * 82.55342 * 11 10 9 32 32 H 1.09002 * 110.40771 * 341.69608 * 13 12 11 33 33 H 1.09002 * 110.40268 * 219.38422 * 13 12 11 34 34 H 1.09007 * 109.91678 * 117.07783 * 14 13 12 35 35 H 1.08999 * 109.91575 * 238.36625 * 14 13 12 36 36 H 1.09008 * 109.46880 * 299.99463 * 18 16 15 37 37 H 1.09000 * 109.47165 * 59.99645 * 18 16 15 38 38 H 1.09000 * 109.47028 * 59.99968 * 22 19 18 39 39 H 1.09001 * 110.68322 * 80.82797 * 25 15 14 40 40 H 1.09000 * 110.68339 * 203.99869 * 25 15 14 41 41 H 1.09005 * 109.98245 * 58.57767 * 26 9 7 42 42 H 1.09001 * 110.02071 * 297.28715 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1427 -2.5339 -0.0010 11 6 -0.4072 -3.9381 0.6045 12 6 0.7837 -4.7366 0.0522 13 6 1.1113 -5.9477 0.9294 14 6 0.4798 -7.1481 0.1927 15 7 -0.2086 -6.6119 -0.9979 16 6 -1.2461 -7.1696 -1.6528 17 8 -1.7185 -6.6165 -2.6234 18 6 -1.8194 -8.4804 -1.1793 19 6 -2.9792 -8.8885 -2.0898 20 9 -3.9722 -7.9037 -2.0498 21 9 -2.5148 -9.0294 -3.4019 22 6 -3.5608 -10.2196 -1.6094 23 9 -4.6217 -10.5924 -2.4416 24 9 -2.5676 -11.2040 -1.6498 25 6 0.4712 -5.3347 -1.3279 26 6 1.9329 -3.7312 -0.0005 27 1 -0.4850 0.8400 0.0004 28 1 -0.6002 -1.7623 0.6180 29 1 -0.5284 -2.4800 -1.0191 30 1 -1.3521 -4.3470 0.2465 31 1 -0.3847 -3.9051 1.6937 32 1 0.6671 -5.8322 1.9181 33 1 2.1905 -6.0770 1.0111 34 1 1.2580 -7.8480 -0.1121 35 1 -0.2381 -7.6473 0.8434 36 1 -1.0456 -9.2476 -1.2101 37 1 -2.1816 -8.3704 -0.1572 38 1 -3.9226 -10.1102 -0.5870 39 1 1.3910 -5.5202 -1.8826 40 1 -0.1933 -4.6790 -1.8906 41 1 2.5731 -3.8506 0.8737 42 1 2.5145 -3.8779 -0.9107 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671084780.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:10 Heat of formation + Delta-G solvation = -197.267336 kcal Electronic energy + Delta-G solvation = -30572.571045 eV Core-core repulsion = 25667.215971 eV Total energy + Delta-G solvation = -4905.355074 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.19698 -48.93358 -47.83661 -47.30735 -40.37692 -38.49481 -35.77675 -33.35299 -32.58153 -30.68221 -29.32587 -28.65655 -27.85649 -25.53698 -24.31329 -22.71010 -22.43192 -20.40864 -19.67276 -18.95944 -18.88293 -18.59306 -17.94200 -17.13465 -16.99009 -16.83163 -16.32491 -16.02777 -15.16627 -14.89473 -14.80323 -14.58460 -14.53972 -14.32517 -14.08344 -13.99027 -13.81585 -13.70672 -13.41436 -13.23349 -12.91389 -12.75913 -12.53387 -12.46137 -12.17627 -11.81520 -11.76874 -11.38892 -11.28457 -11.19940 -10.95157 -10.79426 -10.29564 -10.12683 -10.02534 -9.99944 -9.75574 -9.50624 -8.74244 -8.65561 -6.85127 -5.65801 -3.07900 2.13135 2.41504 2.74418 3.16590 3.29644 3.39719 3.44440 3.46543 3.47498 3.54091 4.15402 4.22758 4.35064 4.47978 4.57750 4.73413 4.80745 4.84900 4.92692 5.16612 5.28878 5.40506 5.49315 5.75034 5.81586 5.84655 5.92945 5.97618 6.09872 6.24558 6.30696 6.51227 6.59002 6.69906 6.79472 7.40448 7.51378 7.60967 7.84884 7.95383 8.34578 9.20634 9.81489 10.46260 11.38044 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.027102 B = 0.002508 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.902807 B =11159.630528 C =11670.427865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.011 4.011 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.224 4.224 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.153 3.847 11 C -0.129 4.129 12 C -0.083 4.083 13 C -0.119 4.119 14 C 0.099 3.901 15 N -0.616 5.616 16 C 0.533 3.467 17 O -0.519 6.519 18 C -0.189 4.189 19 C 0.271 3.729 20 F -0.165 7.165 21 F -0.169 7.169 22 C 0.236 3.764 23 F -0.181 7.181 24 F -0.181 7.181 25 C 0.125 3.875 26 C 0.152 3.848 27 H 0.252 0.748 28 H 0.105 0.895 29 H 0.012 0.988 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.145 0.855 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.029 0.971 42 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.158 -23.570 3.167 24.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.206 4.206 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.352 4.352 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.028 3.972 11 C -0.167 4.167 12 C -0.084 4.084 13 C -0.157 4.157 14 C -0.024 4.024 15 N -0.350 5.350 16 C 0.320 3.680 17 O -0.395 6.395 18 C -0.230 4.230 19 C 0.233 3.767 20 F -0.146 7.146 21 F -0.150 7.150 22 C 0.181 3.819 23 F -0.162 7.162 24 F -0.162 7.162 25 C 0.004 3.996 26 C 0.025 3.975 27 H 0.063 0.937 28 H 0.123 0.877 29 H 0.030 0.970 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.162 0.838 39 H 0.091 0.909 40 H 0.109 0.891 41 H 0.047 0.953 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -4.547 -23.091 2.526 23.669 hybrid contribution 0.466 0.710 -0.200 0.873 sum -4.081 -22.380 2.327 22.868 Atomic orbital electron populations 1.69805 1.04893 1.24810 1.57447 1.24794 0.95716 0.97736 1.02393 0.86079 0.78483 0.83371 0.77582 1.21629 1.21673 1.20718 1.19057 0.90470 0.82424 1.43246 0.90482 1.44624 1.01871 0.99604 1.86945 1.21987 0.84553 0.92361 0.98316 1.22852 0.95268 0.98770 0.99826 1.21617 0.98570 0.94444 0.93808 1.22381 1.01261 0.93082 0.98973 1.22278 0.96314 0.97197 0.86587 1.48832 1.31925 1.24387 1.29855 1.19344 0.79593 0.85586 0.83482 1.90843 1.59265 1.63122 1.26254 1.22796 0.98540 0.99864 1.01757 1.21555 0.86322 0.86669 0.82155 1.93149 1.62196 1.62862 1.96397 1.93138 1.88800 1.95799 1.37276 1.22843 0.77738 0.84440 0.96841 1.93084 1.56371 1.92137 1.74645 1.93063 1.62005 1.63644 1.97498 1.22431 0.96896 0.83314 0.96951 1.21053 0.92706 0.85535 0.98156 0.93708 0.87730 0.96955 0.92493 0.91916 0.90247 0.90231 0.91239 0.91028 0.84972 0.85136 0.83809 0.90881 0.89135 0.95268 0.95840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.86 10.10 55.49 0.56 -26.30 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.22 -6.14 10.28 -15.06 -0.15 -6.30 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -15.07 3.41 -170.41 -0.58 -15.65 16 10 C 0.15 3.66 5.77 -2.30 -0.01 3.65 16 11 C -0.13 -2.34 5.97 -25.24 -0.15 -2.49 16 12 C -0.08 -1.30 0.68 -153.91 -0.11 -1.41 16 13 C -0.12 -1.30 6.06 -25.97 -0.16 -1.46 16 14 C 0.10 0.88 6.77 -2.72 -0.02 0.86 16 15 N -0.62 -7.81 3.31 -170.02 -0.56 -8.37 16 16 C 0.53 7.19 7.66 -10.99 -0.08 7.11 16 17 O -0.52 -9.55 15.06 5.55 0.08 -9.46 16 18 C -0.19 -1.53 4.25 -27.89 -0.12 -1.65 16 19 C 0.27 2.76 1.40 -26.73 -0.04 2.72 16 20 F -0.17 -2.10 16.13 2.25 0.04 -2.07 16 21 F -0.17 -2.31 16.10 2.25 0.04 -2.27 16 22 C 0.24 1.61 4.83 37.16 0.18 1.79 16 23 F -0.18 -1.72 17.30 2.25 0.04 -1.69 16 24 F -0.18 -1.33 16.80 2.25 0.04 -1.30 16 25 C 0.13 1.95 5.88 -2.67 -0.02 1.94 16 26 C 0.15 2.95 6.43 -3.65 -0.02 2.92 16 27 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.10 2.85 5.89 -51.93 -0.31 2.54 16 29 H 0.01 0.33 8.10 -51.93 -0.42 -0.09 16 30 H 0.06 1.00 8.00 -51.93 -0.42 0.58 16 31 H 0.06 1.10 7.80 -51.93 -0.40 0.69 16 32 H 0.08 0.82 7.62 -51.93 -0.40 0.43 16 33 H 0.08 0.79 7.81 -51.93 -0.41 0.39 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.44 7.55 -51.93 -0.39 0.05 16 36 H 0.13 0.73 7.80 -51.92 -0.41 0.33 16 37 H 0.13 0.58 7.91 -51.93 -0.41 0.17 16 38 H 0.14 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.07 1.08 7.82 -51.93 -0.41 0.67 16 40 H 0.09 1.71 7.63 -51.93 -0.40 1.31 16 41 H 0.03 0.55 7.78 -51.93 -0.40 0.15 16 42 H 0.02 0.46 7.63 -51.93 -0.40 0.06 16 LS Contribution 352.30 15.07 5.31 5.31 Total: -1.00 -34.85 352.30 -6.41 -41.26 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -5.55 Total: -3.70 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: -0.80 Total: 7.29 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: -0.58 Total: -50.33 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.08 Total: -9.46 kcal Atomic # 9 Polarization: -7.47 SS G_CDS: 0.15 Total: -7.32 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.85 -6.41 -41.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671084780.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.007 kcal (2) G-P(sol) polarization free energy of solvation -34.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds