Wall clock time and date at job start Tue Mar 31 2020 20:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99733 * 2 1 4 4 H 1.48503 * 109.47050 * 270.00136 * 3 2 1 5 5 H 1.48501 * 109.47046 * 30.00173 * 3 2 1 6 6 H 1.48498 * 109.47264 * 150.00545 * 3 2 1 7 7 C 1.38807 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00216 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99949 * 359.97438 * 7 2 1 10 10 C 1.47559 * 125.67428 * 0.04915 * 9 7 2 11 11 C 1.55191 * 105.00795 * 203.81733 * 10 9 7 12 12 C 1.53646 * 101.41198 * 324.51946 * 11 10 9 13 13 C 1.53093 * 111.77681 * 155.68439 * 12 11 10 14 14 C 1.54352 * 104.72526 * 100.54324 * 13 12 11 15 15 N 1.47612 * 107.05508 * 357.72257 * 14 13 12 16 16 C 1.34772 * 126.91710 * 205.03496 * 15 14 13 17 17 O 1.21285 * 119.99943 * 179.97438 * 16 15 14 18 18 C 1.50698 * 120.00452 * 359.97438 * 16 15 14 19 19 C 1.52996 * 109.47452 * 179.97438 * 18 16 15 20 20 F 1.39903 * 109.46778 * 299.99633 * 19 18 16 21 21 F 1.39900 * 109.47271 * 59.99649 * 19 18 16 22 22 C 1.53001 * 109.47292 * 179.97438 * 19 18 16 23 23 F 1.39897 * 109.47040 * 179.97438 * 22 19 18 24 24 F 1.39897 * 109.46812 * 299.99767 * 22 19 18 25 25 C 1.48404 * 106.15899 * 25.00064 * 15 14 13 26 26 C 1.47414 * 125.67407 * 180.02562 * 9 7 2 27 27 H 0.96993 * 120.00075 * 359.97438 * 1 2 3 28 28 H 1.08997 * 110.33533 * 322.69774 * 10 9 7 29 29 H 1.09002 * 110.33807 * 84.83163 * 10 9 7 30 30 H 1.09003 * 111.03727 * 206.48784 * 11 10 9 31 31 H 1.08994 * 111.03666 * 82.55342 * 11 10 9 32 32 H 1.09002 * 110.40771 * 341.69608 * 13 12 11 33 33 H 1.09002 * 110.40268 * 219.38422 * 13 12 11 34 34 H 1.09007 * 109.91678 * 117.07783 * 14 13 12 35 35 H 1.08999 * 109.91575 * 238.36625 * 14 13 12 36 36 H 1.09008 * 109.46880 * 299.99463 * 18 16 15 37 37 H 1.09000 * 109.47165 * 59.99645 * 18 16 15 38 38 H 1.09000 * 109.47028 * 59.99968 * 22 19 18 39 39 H 1.09001 * 110.68322 * 80.82797 * 25 15 14 40 40 H 1.09000 * 110.68339 * 203.99869 * 25 15 14 41 41 H 1.09005 * 109.98245 * 58.57767 * 26 9 7 42 42 H 1.09001 * 110.02071 * 297.28715 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1427 -2.5339 -0.0010 11 6 -0.4072 -3.9381 0.6045 12 6 0.7837 -4.7366 0.0522 13 6 1.1113 -5.9477 0.9294 14 6 0.4798 -7.1481 0.1927 15 7 -0.2086 -6.6119 -0.9979 16 6 -1.2461 -7.1696 -1.6528 17 8 -1.7185 -6.6165 -2.6234 18 6 -1.8194 -8.4804 -1.1793 19 6 -2.9792 -8.8885 -2.0898 20 9 -3.9722 -7.9037 -2.0498 21 9 -2.5148 -9.0294 -3.4019 22 6 -3.5608 -10.2196 -1.6094 23 9 -4.6217 -10.5924 -2.4416 24 9 -2.5676 -11.2040 -1.6498 25 6 0.4712 -5.3347 -1.3279 26 6 1.9329 -3.7312 -0.0005 27 1 -0.4850 0.8400 0.0004 28 1 -0.6002 -1.7623 0.6180 29 1 -0.5284 -2.4800 -1.0191 30 1 -1.3521 -4.3470 0.2465 31 1 -0.3847 -3.9051 1.6937 32 1 0.6671 -5.8322 1.9181 33 1 2.1905 -6.0770 1.0111 34 1 1.2580 -7.8480 -0.1121 35 1 -0.2381 -7.6473 0.8434 36 1 -1.0456 -9.2476 -1.2101 37 1 -2.1816 -8.3704 -0.1572 38 1 -3.9226 -10.1102 -0.5870 39 1 1.3910 -5.5202 -1.8826 40 1 -0.1933 -4.6790 -1.8906 41 1 2.5731 -3.8506 0.8737 42 1 2.5145 -3.8779 -0.9107 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671084780.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:09 Heat of formation + Delta-G solvation = -220.700476 kcal Electronic energy + Delta-G solvation = -30573.587182 eV Core-core repulsion = 25667.215971 eV Total energy + Delta-G solvation = -4906.371211 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.86187 -49.62989 -48.51143 -48.06768 -41.49682 -39.76154 -37.23365 -34.60358 -33.83605 -32.09619 -30.80572 -29.82320 -28.87281 -27.09207 -25.76978 -23.64872 -23.34170 -22.23476 -20.61401 -20.20914 -19.53096 -19.36563 -18.87948 -18.53538 -17.81446 -17.78258 -17.25859 -17.06450 -16.75953 -16.14481 -15.89752 -15.65002 -15.51152 -15.30884 -15.12397 -14.92109 -14.66669 -14.63107 -14.59375 -14.23499 -14.04903 -13.89873 -13.63588 -13.57427 -13.28571 -13.18723 -12.98491 -12.89742 -12.81053 -12.59468 -12.40113 -12.02007 -11.91994 -11.82337 -11.53516 -11.42513 -11.20315 -11.03056 -10.75111 -9.75366 -8.89254 -7.77640 -5.22182 1.45223 1.46096 1.47703 1.47734 1.56281 1.91908 2.49277 2.51128 2.79170 2.86732 3.00870 3.30400 3.41326 3.57112 3.70113 3.73537 3.75869 3.79485 3.82101 4.22914 4.27990 4.30472 4.35966 4.40342 4.58937 4.63222 4.73630 4.82239 4.90705 4.99055 5.03854 5.09343 5.18701 5.37904 5.42516 5.46986 5.60214 5.80718 6.29070 6.46559 6.98959 7.09428 7.77962 8.42226 9.24481 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.027102 B = 0.002508 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.902807 B =11159.630528 C =11670.427865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.072 4.072 3 Si 0.980 3.020 4 H -0.291 1.291 5 H -0.294 1.294 6 H -0.264 1.264 7 C -0.235 4.235 8 H 0.085 0.915 9 N -0.627 5.627 10 C 0.156 3.844 11 C -0.109 4.109 12 C -0.073 4.073 13 C -0.111 4.111 14 C 0.098 3.902 15 N -0.614 5.614 16 C 0.521 3.479 17 O -0.585 6.585 18 C -0.175 4.175 19 C 0.248 3.752 20 F -0.187 7.187 21 F -0.200 7.200 22 C 0.245 3.755 23 F -0.201 7.201 24 F -0.182 7.182 25 C 0.126 3.874 26 C 0.146 3.854 27 H 0.245 0.755 28 H 0.068 0.932 29 H -0.031 1.031 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.115 0.885 36 H 0.168 0.832 37 H 0.180 0.820 38 H 0.205 0.795 39 H 0.078 0.922 40 H 0.041 0.959 41 H 0.047 0.953 42 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.843 -26.909 5.953 27.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.264 4.264 3 Si 0.809 3.191 4 H -0.219 1.219 5 H -0.221 1.221 6 H -0.189 1.189 7 C -0.364 4.364 8 H 0.103 0.897 9 N -0.353 5.353 10 C 0.030 3.970 11 C -0.147 4.147 12 C -0.074 4.074 13 C -0.149 4.149 14 C -0.023 4.023 15 N -0.347 5.347 16 C 0.311 3.689 17 O -0.465 6.465 18 C -0.214 4.214 19 C 0.211 3.789 20 F -0.168 7.168 21 F -0.181 7.181 22 C 0.191 3.809 23 F -0.182 7.182 24 F -0.163 7.163 25 C 0.003 3.997 26 C 0.021 3.979 27 H 0.055 0.945 28 H 0.086 0.914 29 H -0.013 1.013 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.133 0.867 36 H 0.185 0.815 37 H 0.198 0.802 38 H 0.221 0.779 39 H 0.097 0.903 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -3.187 -26.492 5.351 27.214 hybrid contribution 0.105 1.776 -1.135 2.110 sum -3.081 -24.717 4.215 25.262 Atomic orbital electron populations 1.70089 1.06388 1.24889 1.58883 1.25672 0.96582 1.01180 1.02977 0.85042 0.77790 0.79045 0.77250 1.21854 1.22089 1.18871 1.19494 0.91121 0.83746 1.42073 0.89722 1.44947 1.02394 1.01210 1.86760 1.21710 0.84395 0.95241 0.95610 1.22619 0.96721 0.95180 1.00199 1.21477 0.95562 0.95391 0.95020 1.22403 1.02967 0.90845 0.98696 1.22628 0.97889 0.96570 0.85220 1.48910 1.31735 1.23077 1.30957 1.20375 0.78974 0.86991 0.82599 1.90821 1.61184 1.65265 1.29248 1.22921 0.98408 0.96953 1.03166 1.22370 0.86990 0.88237 0.81335 1.93097 1.63192 1.64144 1.96403 1.93071 1.89215 1.96004 1.39789 1.23243 0.76864 0.82162 0.98644 1.93045 1.57309 1.92145 1.75713 1.93062 1.62199 1.63466 1.97561 1.22153 0.96350 0.84641 0.96545 1.21305 0.94181 0.83860 0.98556 0.94538 0.91360 1.01268 0.92095 0.90415 0.88665 0.88400 0.88253 0.86689 0.81491 0.80236 0.77881 0.90341 0.94015 0.93545 0.95960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.39 10.10 21.65 0.22 -58.17 16 2 C -0.07 -4.15 5.49 84.86 0.47 -3.68 16 3 Si 0.98 46.22 29.55 68.60 2.03 48.25 16 4 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 5 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.24 -13.20 10.28 84.03 0.86 -12.34 16 8 H 0.08 4.49 7.83 -2.91 -0.02 4.46 16 9 N -0.63 -32.14 3.41 -693.07 -2.36 -34.50 16 10 C 0.16 7.91 5.77 86.93 0.50 8.41 16 11 C -0.11 -3.93 5.97 31.56 0.19 -3.74 16 12 C -0.07 -2.18 0.68 -51.80 -0.04 -2.22 16 13 C -0.11 -1.89 6.06 31.08 0.19 -1.70 16 14 C 0.10 1.15 6.77 86.63 0.59 1.73 16 15 N -0.61 -14.00 3.31 -810.23 -2.68 -16.68 16 16 C 0.52 13.22 7.66 87.66 0.67 13.89 16 17 O -0.59 -22.35 15.06 -3.04 -0.05 -22.39 16 18 C -0.18 -2.09 4.25 29.85 0.13 -1.97 16 19 C 0.25 4.55 1.40 30.59 0.04 4.60 16 20 F -0.19 -4.68 16.13 44.97 0.73 -3.96 16 21 F -0.20 -5.47 16.10 44.97 0.72 -4.74 16 22 C 0.24 2.48 4.83 71.98 0.35 2.83 16 23 F -0.20 -3.48 17.30 44.97 0.78 -2.71 16 24 F -0.18 -1.98 16.80 44.97 0.76 -1.23 16 25 C 0.13 3.92 5.88 86.22 0.51 4.43 16 26 C 0.15 5.56 6.43 86.13 0.55 6.12 16 27 H 0.24 14.64 8.31 -92.71 -0.77 13.87 16 28 H 0.07 3.96 5.89 -2.39 -0.01 3.95 16 29 H -0.03 -1.77 8.10 -2.39 -0.02 -1.79 16 30 H 0.06 2.14 8.00 -2.39 -0.02 2.12 16 31 H 0.08 2.58 7.80 -2.39 -0.02 2.56 16 32 H 0.09 1.40 7.62 -2.39 -0.02 1.39 16 33 H 0.10 1.39 7.81 -2.39 -0.02 1.37 16 34 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.11 0.47 7.55 -2.39 -0.02 0.45 16 36 H 0.17 0.86 7.80 -2.38 -0.02 0.84 16 37 H 0.18 0.35 7.91 -2.39 -0.02 0.34 16 38 H 0.20 -0.32 8.14 -2.39 -0.02 -0.34 16 39 H 0.08 2.32 7.82 -2.39 -0.02 2.30 16 40 H 0.04 1.69 7.63 -2.39 -0.02 1.68 16 41 H 0.05 1.63 7.78 -2.38 -0.02 1.61 16 42 H 0.02 0.86 7.63 -2.39 -0.02 0.84 16 Total: -1.00 -86.74 352.30 6.20 -80.54 By element: Atomic # 1 Polarization: -1.83 SS G_CDS: 1.05 Total: -0.78 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: 5.01 Total: 16.36 kcal Atomic # 7 Polarization: -104.53 SS G_CDS: -4.83 Total: -109.35 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.05 Total: -22.39 kcal Atomic # 9 Polarization: -15.61 SS G_CDS: 2.98 Total: -12.63 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -86.74 6.20 -80.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671084780.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.160 kcal (2) G-P(sol) polarization free energy of solvation -86.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds